mRNA_H-paniculata_contig13450.2151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig13450.2151.1
Unique Name	mRNA_H-paniculata_contig13450.2151.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5JVE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE0_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.520e-43
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1

Query:    1 KLILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +++LMLLF LRK+G SEN+ VLQVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:   69 RIVLMLLFDLRKEGCSENEVVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKTAKKDDGRRRLTKAQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 176

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.700e-40
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 1

Query:    4 LILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            ++LMLLF LRK+G +EN++VLQVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:    1 MVLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 107

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.170e-40
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 1

Query:    1 KLILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +++LMLLF LRK G  EN++VLQVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:   78 RMVLMLLFDLRKGGCCENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 185

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.140e-39
Identity = 71/108 (65.74%), Postives = 84/108 (77.78%), Query Frame = 1

Query:    1 KLILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +++LMLLF LRK G SE ++VL+VA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:  171 RMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 278

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.960e-39
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1

Query:    1 KLILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +++LMLLF LRK+G SEN++VLQVA TFKIGH KV+ +N HWWD+  L ETT  GRGK+ K DDGRRRLT+ Q DQL + INDEHKAGRQVF RTVAEW+   CN ++
Sbjct:  139 RMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNMEQ 246

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.830e-38
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 1

Query:    1 KLILMLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +++LMLLF LRK G SE ++VL+VA TFKIGH KV+ +N HWWD+  L E T  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:  105 RMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 212

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.830e-31
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1

Query:   64 LQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +QVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:    9 VQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 95

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.060e-31
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1

Query:   64 LQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +QVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:    9 VQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 95

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5KGQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.230e-31
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1

Query:   58 SVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +V   A TFKIG+ KV+ +N HWWD+  L ETT  GRGK  K DDGRRR+T+ QEDQL + I+DEHKAGRQVF RTVAEWM   CN ++
Sbjct:    8 NVQVAAHTFKIGYDKVRRINNHWWDHRQLYETTAVGRGKTAKRDDGRRRVTEVQEDQLREFISDEHKAGRQVFRRTVAEWMHRTCNMEQ 96

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BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.250e-31
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1

Query:   64 LQVASTFKIGHSKVKDVNKHWWDNNTLLETTGEGRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHCNPDK 324
            +QVA TFKIGH KV+ +N HWWD+  L ETT  GRGK  K DDGRRRLT+ QEDQL + INDEHKAGRQVF RTVAEWM   CN ++
Sbjct:  137 VQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQ 223

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig13450.2151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVE0_9PHAE	1.520e-43	67.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKL0_9PHAE	1.700e-40	67.29	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A6H5KAU4_9PHAE	2.170e-40	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMA8_9PHAE	2.140e-39	65.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNM6_ECTSI	3.960e-39	65.74	DDE_3 domain-containing protein n=3 Tax=Ectocarpus...	[more]
A0A6H5KIM5_9PHAE	5.830e-38	64.81	DDE_3 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5KDX7_9PHAE	1.830e-31	67.82	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K024_9PHAE	3.060e-31	67.82	DDE_3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KGQ7_9PHAE	3.230e-31	61.80	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JR41_9PHAE	5.250e-31	67.82	DDE_3 domain-containing protein n=5 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig13450	contig	H-paniculata_contig13450:5360..6216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	327
Cds size	315
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig13450.2151.1	prot_H-paniculata_contig13450.2151.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig13450 5360..6204 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929066.3673244-CDS-H-paniculata_contig13450:5359..5617	1622929066.3673244-CDS-H-paniculata_contig13450:5359..5617	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13450 5360..5617 -
1691480718.4429064-CDS-H-paniculata_contig13450:5359..5617	1691480718.4429064-CDS-H-paniculata_contig13450:5359..5617	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13450 5360..5617 -
1622929066.3845778-CDS-H-paniculata_contig13450:6147..6204	1622929066.3845778-CDS-H-paniculata_contig13450:6147..6204	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13450 6148..6204 -
1691480718.4526522-CDS-H-paniculata_contig13450:6147..6204	1691480718.4526522-CDS-H-paniculata_contig13450:6147..6204	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig13450 6148..6204 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929066.3979254-UTR-H-paniculata_contig13450:6204..6216	1622929066.3979254-UTR-H-paniculata_contig13450:6204..6216	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig13450 6205..6216 -
1691480718.4622266-UTR-H-paniculata_contig13450:6204..6216	1691480718.4622266-UTR-H-paniculata_contig13450:6204..6216	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig13450 6205..6216 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig13450:5360..6216-
coding sequence from alignment at H-paniculata_contig13450:5360..6216-

protein sequence of mRNA_H-paniculata_contig13450.2151.1

>prot_H-paniculata_contig13450.2151.1 ID=prot_H-paniculata_contig13450.2151.1|Name=mRNA_H-paniculata_contig13450.2151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MLLFALRKDGVSENQSVLQVASTFKIGHSKVKDVNKHWWDNNTLLETTGE
GRGKVTKNDDGRRRLTQDQEDQLYKLINDEHKAGRQVFCRTVAEWMMDHC
NPDKE

mRNA from alignment at H-paniculata_contig13450:5360..6216-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig13450.2151.1 ID=mRNA_H-paniculata_contig13450.2151.1|Name=mRNA_H-paniculata_contig13450.2151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=857bp|location=Sequence derived from alignment at H-paniculata_contig13450:5360..6216- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGATTCTCATGCTGTTGTTTGCTCTTCGCAAGGACGGCGTCTCTGA
GAATCAATCGGTGCTTCAGGTCAGTACGAGTACAGTCAGCAAGTGTATTT
AATATTGATAGTACAAGTGTCTGTTTTGTATTGCTTAAAGTATGCTGTAC
AGCAGCAGTTTTTGCGGCATGTTAATTTGAATCATACGTCTTTCCGCGCT
TTTTCGGTGTTGCTGTTCATACACCTCTGAGTGTACAAGGTACTGCTGTC
TGTACGAACACGGTTGCACTGCTGTCTGCTGTACTGTGCGCACCGTTGTT
CGTACGGTTCGTAACACTGCTGTCTGTACGGTGCACACAGCAGCCTGTAC
GGTTGTGCACTGCTGTGTGTACCGTACAACAGTGAGTTCGCTGTCTCCCA
AATCCTCACCAATATACCCACGGCGATAACGCTGTTACGAATGGCGCCGC
ATGCGCATTTTCTTCCAAGGCTGTACGCTGTTAAACTTCTGCTTTCTGTT
TGCACGGCTTGAGGTGTGCTGTCTTGGCAATTGTACTGACTCGACTCCCG
TATGCCGATGCAATATGCGCTGCGCTCTGGACAACTGAACGTCTGCCAGG
TGGCAAGCACCTTCAAGATCGGCCATTCGAAAGTCAAAGACGTCAACAAG
CACTGGTGGGACAACAACACCCTGTTGGAAACTACCGGCGAAGGAAGAGG
AAAGGTCACCAAGAACGACGACGGCCGACGGCGTCTCACCCAAGATCAGG
AGGATCAGCTTTATAAGCTTATCAACGACGAGCACAAAGCCGGGCGACAA
GTCTTTTGCCGTACGGTGGCGGAGTGGATGATGGACCACTGCAACCCAGA
CAAGGAG

Coding sequence (CDS) from alignment at H-paniculata_contig13450:5360..6216-

>mRNA_H-paniculata_contig13450.2151.1 ID=mRNA_H-paniculata_contig13450.2151.1|Name=mRNA_H-paniculata_contig13450.2151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig13450:5360..6216- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTGTTTGCTCTTCGCAAGGACGGCGTCTCTGAGAATCAATCGGT
GCTTCAGATGCTGTTGTTTGCTCTTCGCAAGGACGGCGTCTCTGAGAATC
AATCGGTGCTTCAGGTGGCAAGCACCTTCAAGATCGGCCATTCGAAAGTC
AAAGACGTCAACAAGCACTGGTGGGACAACAACACCCTGTTGGAAACTAC
CGGCGAAGGAAGAGGAAAGGTCACCAAGAACGACGACGGCCGACGGCGTC
TCACCCAAGATCAGGAGGATCAGCTTTATAAGCTTATCAACGACGAGCAC
AAAGCCGGGCGACAAGTCTTTTGCCGTACGGTGGCGGAGTGGATGATGGA
CCACTGCAACCCAGACAAGGAGGTGGCAAGCACCTTCAAGATCGGCCATT
CGAAAGTCAAAGACGTCAACAAGCACTGGTGGGACAACAACACCCTGTTG
GAAACTACCGGCGAAGGAAGAGGAAAGGTCACCAAGAACGACGACGGCCG
ACGGCGTCTCACCCAAGATCAGGAGGATCAGCTTTATAAGCTTATCAACG
ACGAGCACAAAGCCGGGCGACAAGTCTTTTGCCGTACGGTGGCGGAGTGG
ATGATGGACCACTGCAACCCAGACAAGGAG