mRNA_H-paniculata_contig1345.2150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 157 bits (398), Expect = 7.770e-44 Identity = 88/178 (49.44%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 4 HKSHIAKVMFICAVLRPDRSRDFDGKVGIWCVCVIKQSARRER-------------------GRH--------YEFDVIIDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLV 456
H+SH+ K+M I A RPD + DFDGK+GIW +CVI+ + R + GR+ YEFD IDAE Y++ D LPA KEKM WL S+RVV QQD ASPHTGK P LN G W + LVTQPAQSPDLNINDLG FA LK R+W +I+ LV
Sbjct: 187 HESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN) HSP 1 Score: 103 bits (256), Expect = 1.590e-23 Identity = 62/179 (34.64%), Postives = 97/179 (54.19%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRP----DRSRDFDGKVGIWCVCVIKQSARRERGRH---YEFDVI-IDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYEAPTLKRVW 513
++K++I KVMF+ AV RP R R +DGK+G+W V + + R + R E +D + Y+ +P+ K ++W +RV Q D A PH D P + DG W++++ QPA SPD N+NDLGFFA ++S +++ TI LV V + Y+ E T+ +V+
Sbjct: 48 KNKNYIVKVMFLVAVARPRWDSKRHRIWDGKIGLWPFVVYEPAERSSKNRPAGTLELKTYNVDKDVYRHALCRMVIPSVK--VVWPSGKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVF 223
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU) HSP 1 Score: 99.8 bits (247), Expect = 2.690e-21 Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 1
Query: 7 KSHIAKVMFICAVLRP----DRSRDFDGKVGIWCVCVIKQSARRE-----RGRHYEFDV-IIDAEQYQEGQKDYFLPASKEK--MLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEV 465
K I KVMF+CAV RP DR+ FDGK+GIW V+K+ A+R RG ++ ++A +YQ+ + LPA +EK + W +S + Q+D A PH + R + E R+ WNI + TQP SPD N+ DLGFFA +++ +++R I+ L+ V
Sbjct: 265 KRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPF-VVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCW-KSRPIFIQEDNAKPHHLRSRAA-VREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANV 426
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: A0A024TAS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAS5_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.340e-21 Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRPDRSRDFDGKVGIWCV----CVIKQSARRERGRHYEFDVIIDAEQYQEGQKDYFLPASKEKMLW---LESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKS 414
Q KSHI KVMF+CAV RP +DG++G W + ++ S R G V++ + Y+ D +PA K K W ++ +V QQD A PH D + DG W I + QPAQSPD+N+ DLGFF ++S
Sbjct: 22 QSKSHITKVMFLCAVARPRNG--WDGRLGCWEIVERAAAVRSSHNRPAGTEVVKSVVVTKDVYRRILVDKVVPAIKSKWKWPVGVDGGAIVLQQDNARPHIAPDDAEFVT-ASEDGGWTIRIENQPAQSPDMNVLDLGFFNSIQS 163
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN) HSP 1 Score: 99.0 bits (245), Expect = 6.530e-21 Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRP----DRSRDFDGKVGIWCVCVIKQSARRERGRH---YEFDVI-IDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYEAPTLKRVW 513
++K++I KVMF+ AV RP R R +DGK+G+W V + + R + R E +D + Y++ +P+ K +W +RV Q D A PH D P + DG W++++ PA SPD N+NDLGFF ++S +++ TI LV V + Y E T+ +V+
Sbjct: 188 KNKNYIVKVMFLVAVARPRWDSKRHRIWDGKIGLWPFVVYEPAERSSKNRPAGTLELKTYNVDKDVYRQALCRMVIPSVK--AVWPSGKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPPPANSPDFNVNDLGFFTSIQSLQHKKKARTIEDLVNNVEEAYSQLEYSTIDKVF 363
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.060e-20 Identity = 63/171 (36.84%), Postives = 86/171 (50.29%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRPDRS----RDFDGKVGIW----CVCVIKQSARRERGRHYEFDVIIDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYE 489
Q K HI KVMF+CAV RP + +DGKVG+W ++S R+RG + + Y+ D +PA + + + QQD A PH D P L GR WNI L+ QPAQSPD N+ DLGFF ++S + TI+ L++ V DA+E
Sbjct: 200 QSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLA-AGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVE---DAFE 366
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.930e-20 Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 7 KSHIAKVMFICAVLRPD----RSRDFDGKVGIWCVC----VIKQSARRERGRHYEFDVIIDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYEAPTLKRVWQS 519
K HI KVMF+ AV RP R +DG++G+W ++ S R+RG + + Y+ D +PA + K + ++ QQD A PH + P + GR G W I+L +QPAQSPDLN+ DLG+F ++S + T++ LV V K ++ E L + + +
Sbjct: 77 KKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVA-AGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMT 254
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D) HSP 1 Score: 94.4 bits (233), Expect = 2.480e-19 Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRPDRSRD----FDGKVGIWC----VCVIKQSARRERGRHYEFDVIIDAEQYQEGQK--DYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYEAPTLKRVW 513
Q+ +++ KVMF+C + RP + FDGK+GI+ V + S RERG E I + +K D LPA + K W S+ ++ QQD + PH + L+ ++G +NI L+ QP QSPDLN+ DLGFF ++S ++ + LV+ V++ Y+AY+ + W
Sbjct: 302 QNSNYLVKVMFLCGIARPIIGYNGEVLFDGKLGIFPFTEEVPAKRSSKNRERGT-IEIKAITSVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQEG-FNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTW 480
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.330e-19 Identity = 59/169 (34.91%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 1 QHKSHIAKVMFICAVLRP----DRSRDFDGKVGIWCVCVIKQSARR----ERGRHYEFDVIIDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDA 483
Q K HI KVMF+CAV RP R +DGK+G+W + K +ARR +RG + + Y+ D +PA + K + QQ+ A PH D + ++G WNI LV QPA SP+ N+ DLGFF ++S + TI+ L+ V+ Y +
Sbjct: 133 QSKRHITKVMFLCAVARPRFDFGRRVMWDGKIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHVAVDDAEVVAASRKNG-WNIQLVAQPAMSPNFNVLDLGFFNAIQSLQHQTAMRTIDDLIASVQDAYSS 300
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 4.660e-19 Identity = 62/179 (34.64%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 7 KSHIAKVMFICAVLRP----DRSRDFDGKVGIW-CVCVI---KQSARRERGRHYEFDVIIDAEQYQEGQKDYFLPASKEKMLWLESERVVAQQDEASPHTGKDRPRKLNELGRDGQWNINLVTQPAQSPDLNINDLGFFACLKSRIWRERYGTINGLVEEVRKMYDAYEAPTLKRVWQS 519
K HI KVMF+ AV RP + R +DGK+G+W V V+ ++S RERG V + + Y+E ++ +P K+ S + QQD A PH D + G W+I LV QPA SPD N+ DLGFF +++ RE I+ LV V + +D + L + + +
Sbjct: 202 KRHIIKVMFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHVEVD-DAAVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRAFDDLDWSVLDKTFMT 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1345.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1345.2150.1 >prot_H-paniculata_contig1345.2150.1 ID=prot_H-paniculata_contig1345.2150.1|Name=mRNA_H-paniculata_contig1345.2150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp MFICAVLRPDRSRDFDGKVGIWCVCVIKQSARRERGRHYEFDVIIDAEQYback to top mRNA from alignment at H-paniculata_contig1345:8815..9345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1345.2150.1 ID=mRNA_H-paniculata_contig1345.2150.1|Name=mRNA_H-paniculata_contig1345.2150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig1345:8815..9345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1345:8815..9345- >mRNA_H-paniculata_contig1345.2150.1 ID=mRNA_H-paniculata_contig1345.2150.1|Name=mRNA_H-paniculata_contig1345.2150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig1345:8815..9345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |