mRNA_H-paniculata_contig1345.2148.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1345.2148.1
Unique NamemRNA_H-paniculata_contig1345.2148.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: D8LE09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE09_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.920e-22
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   70 DAKRRFENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            DAK R   LR R  NSRCADC   CADWASV+HGSFVCL CAG+ R LG+HV FTRSL+MD+WT
Sbjct:  348 DAKLRLGELRLRPDNSRCADCGAPCADWASVAHGSFVCLKCAGQQRSLGMHVIFTRSLVMDKWT 411
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A7S0KCC3_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCC3_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.550e-17
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   34 RRGVKPGTVGAGDAKRRFENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            RR  + G + A DA+R    L +RD N  CADC     DWASV+HG F+CLNC+G HR LG+HV F RS  MD WT
Sbjct:    2 RRAARRGAMNA-DARRVLYALSQRDENKHCADCATTNPDWASVNHGIFLCLNCSGIHRSLGVHVSFVRSTTMDSWT 76
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A6H5K7B0_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.080e-17
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  118 RCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            RCADC   CADWASV+HGSFVCL CAG+HR LG+ V FTRSL+MD+WT
Sbjct:  482 RCADCGAPCADWASVAHGSFVCLKCAGQHRSLGMQVIFTRSLVMDKWT 529
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A482S498_9ARCH (Arf-GAP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S498_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 9.270e-17
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   85 FENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
               + +  GN RC DC  L  DWASVSHG+ +CL CAG+HR LG+ V F RS+ MD WT
Sbjct:   13 LNEIHQFPGNDRCCDCSSLNIDWASVSHGTLLCLECAGKHRSLGVSVSFVRSISMDTWT 71
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: UPI0007121F21 (ADP-ribosylation factor GTPase-activating protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007121F21)

HSP 1 Score: 81.3 bits (199), Expect = 1.660e-16
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   85 FENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            F  LR+  GNS CADC      WASVS+G+F+CL+C+G+HR LG+HV F RS+ MD WT
Sbjct:    9 FNELRKMPGNSVCADCGAARPQWASVSYGTFICLSCSGKHRGLGVHVSFVRSVQMDSWT 67
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: G7E0V5_MIXOS (Arf-GAP domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E0V5_MIXOS)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-16
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   70 DAKRRFENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            DAK    +L ++DGN  C DC      WASVSHG+++CLNC+G HR LG+H+ F RSL MD+W+
Sbjct:    5 DAKGLLLDLMKQDGNKLCCDCKAPMPQWASVSHGTYICLNCSGVHRSLGVHISFVRSLTMDKWS 68
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A7R9XRC8_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XRC8_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 6.100e-16
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   70 DAKRRFENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            DA+     L+R DGN++CADC      WASVSHG+FVCL C+G HR LG+HV F RS  MD W+
Sbjct:    5 DARDALRALQRADGNAQCADCETKNPQWASVSHGAFVCLECSGVHRSLGVHVSFVRSASMDSWS 68
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A3R7G1Y4_9STRA (Arf-GAP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G1Y4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.730e-15
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   88 ENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            + LRR  GN+RC DC      WA+VS+G+F+CL C+GRHR LG+H+ F RS+ MD WT
Sbjct:   11 QELRRLPGNNRCVDCDAPYPQWATVSYGTFMCLECSGRHRGLGVHISFVRSVTMDSWT 68
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A0A453ID41_AEGTS (Arf-GAP domain-containing protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453ID41_AEGTS)

HSP 1 Score: 78.6 bits (192), Expect = 1.780e-15
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   64 AGDAKRRFENLRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            A  A RR   L+ R GN  C DC      WASVS+G F+CL C+G+HR LG+H+ F RS+ MD WT
Sbjct:    3 ASTAARRLRELQGRPGNKTCVDCAQRNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWT 68
[Close]
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Match: A4RX18_OSTLU (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RX18_OSTLU)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   94 LRRRDGNSRCADCCGLCADWASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT 261
            L+R DGN++CADC      WASVSHG+FVCL C+G HR LG+HV F RS  MD W+
Sbjct:    4 LQRADGNAQCADCETKNPQWASVSHGAFVCLECSGVHRSLGVHVSFVRSASMDSWS 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1345.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE09_ECTSI3.920e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0KCC3_9CHLO1.550e-1753.95Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A6H5K7B0_9PHAE2.080e-1775.00Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A482S498_9ARCH9.270e-1754.24Arf-GAP domain-containing protein n=1 Tax=archaeon... [more]
UPI0007121F211.660e-1657.63ADP-ribosylation factor GTPase-activating protein ... [more]
G7E0V5_MIXOS2.340e-1653.13Arf-GAP domain-containing protein n=1 Tax=Mixia os... [more]
A0A7R9XRC8_9CHLO6.100e-1656.25Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A3R7G1Y4_9STRA1.730e-1555.17Arf-GAP domain-containing protein n=3 Tax=Phytopht... [more]
A0A453ID41_AEGTS1.780e-1551.52Arf-GAP domain-containing protein n=2 Tax=Triticin... [more]
A4RX18_OSTLU2.020e-1560.71Arf-GAP domain-containing protein (Fragment) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1345contigH-paniculata_contig1345:1788..2925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D8LE09
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0704@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.9467728-CDS-H-paniculata_contig1345:1788..19331622929065.9467728-CDS-H-paniculata_contig1345:1788..1933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1345 1789..1933 -
1691480718.314529-CDS-H-paniculata_contig1345:1788..19331691480718.314529-CDS-H-paniculata_contig1345:1788..1933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1345 1789..1933 -
1622929065.9657073-CDS-H-paniculata_contig1345:2809..29251622929065.9657073-CDS-H-paniculata_contig1345:2809..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1345 2810..2925 -
1691480718.325789-CDS-H-paniculata_contig1345:2809..29251691480718.325789-CDS-H-paniculata_contig1345:2809..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1345 2810..2925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1345.2148.1prot_H-paniculata_contig1345.2148.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1345 1789..2925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1345.2148.1

>prot_H-paniculata_contig1345.2148.1 ID=prot_H-paniculata_contig1345.2148.1|Name=mRNA_H-paniculata_contig1345.2148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
PRVSDVEARLNRRGVKPGTVGAGDAKRRFENLRRRDGNSRCADCCGLCAD
WASVSHGSFVCLNCAGRHRELGLHVRFTRSLLMDQWT
back to top

mRNA from alignment at H-paniculata_contig1345:1788..2925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1345.2148.1 ID=mRNA_H-paniculata_contig1345.2148.1|Name=mRNA_H-paniculata_contig1345.2148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-paniculata_contig1345:1788..2925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGAGTGAGCGACGTGGAGGCGAGGTTGAACAGGAGAGGGGTCAAACC
CGGGACGGTAGGTGCGGGAGATGCTAAACGGAGGTTTGAGAATTTGAGGC
GGCGGGATGGGAACAGGTGCGGGGGCAGGTCTGGGGGGGGGGGTTAGGTC
GTTTTCAGGTTGCTGGATTAATCATCTACAAACTGAATTTCCTGTATCCA
GAATCTTCAACAGGCGCACGGCTTGTGTAAGGGACCCCTGTGCATTATAT
GGGGAAAATTTGAATGATCATGTTTCAGGAGTTACCCACCTATCAGCAGT
AGTGTCGGGGTAGGTAGCTTGCATGCCCTACATAAGAGTCAGCTATTTAA
TTTTGCTGCTTTTTGCTGCGATTCGCTAAGGCTAGACTTCACGAAGTCGA
GGAAAAATTCGAAAGATTATCGAAGACGTACACAAATTGCAGAGCAACAC
TTGTTCAGAGTACCTTGTACCGGTCATGTTCCACTTGTTGTACCTTATTT
ATAAATTTCTATGATGTAATTTGGTAACTTTCGCCGTTTGACATGAACCT
ATAATTGCCTTTTCCTGCATACCTGGGGTATAAGTACGTCAATACGTGAT
GATTATTTTCGATTTCTTGAAACAAAACAAAAAAAGACGGATGAAAGGAG
CAATCACTGTTATATATATGTATACTATAGTATCTCTTTCTTGTCATACA
TGAACATTTGCCAATTAATTGTGCTATTCTTCTTCTTATTATTAATATTA
TTGCCTTTTGACAAATGCAGACTCAGAACTGGCTTTGGTTACCTTCCAAA
GTGGCTCACAAAGTAAGAAACATGAACGGCAGACGCACGAAGAAAAAATC
AAACCTAATAATAACCACGCGCTGTACTCGAAAACCCGATCTATAGCAAA
ATCTCTTGGACGTGTGCTATTCTTTCTCATCAACTCATTTTCTTATTGGT
GTTTCAACTTCTGTTTTTTCTGGCAACGCAAAAAAATAACAGCCGGTGCG
CAGACTGCTGTGGACTTTGCGCTGATTGGGCGTCGGTGTCTCACGGGTCT
TTCGTCTGTCTCAACTGCGCCGGTCGCCACCGGGAACTAGGGCTGCACGT
CAGATTCACACGGTCGCTGCTGATGGACCAGTGGACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1345:1788..2925-

>mRNA_H-paniculata_contig1345.2148.1 ID=mRNA_H-paniculata_contig1345.2148.1|Name=mRNA_H-paniculata_contig1345.2148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig1345:1788..2925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGAGTGAGCGACGTGGAGGCGAGGTTGAACAGGAGAGGGGTCAAACC
CGGGACGGTAGGTGCGGGAGATGCTAAACGGAGGTTTGAGAATTTGAGGC
GGCGGGATGGGAACAGCCGAGAGTGAGCGACGTGGAGGCGAGGTTGAACA
GGAGAGGGGTCAAACCCGGGACGGTAGGTGCGGGAGATGCTAAACGGAGG
TTTGAGAATTTGAGGCGGCGGGATGGGAACAGCCGGTGCGCAGACTGCTG
TGGACTTTGCGCTGATTGGGCGTCGGTGTCTCACGGGTCTTTCGTCTGTC
TCAACTGCGCCGGTCGCCACCGGGAACTAGGGCTGCACGTCAGATTCACA
CGGTCGCTGCTGATGGACCAGTGGACACCGGTGCGCAGACTGCTGTGGAC
TTTGCGCTGATTGGGCGTCGGTGTCTCACGGGTCTTTCGTCTGTCTCAAC
TGCGCCGGTCGCCACCGGGAACTAGGGCTGCACGTCAGATTCACACGGTC
GCTGCTGATGGACCAGTGGACA
back to top