mRNA_H-paniculata_contig13449.2147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13449.2147.1
Unique NamemRNA_H-paniculata_contig13449.2147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 5.580e-113
Identity = 224/299 (74.92%), Postives = 232/299 (77.59%), Query Frame = 1 
Query:  157 QSAVKNMKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQEAEREKXXXXXXXXXXXXXXREAG--------------GRLETGSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 1011
            + A+K MKWK RGGL+GTASGGQSLRH    DSMPGGRMR+VHDARQRAALLAGD+VLTAQYREMVDG VVTEEEFWESRRRTLAEE AK  SR  GTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG   XXXXXXXXXXXX                             XXXXXXXXXXXXXX                  GRLE+GSVDP+VDLTSQWGDHH REVDDSDP EE SEAA KRK+VVGKFNRHARLV
Sbjct:  146 KDALKKMKWKTRGGLLGTASGGQSLRHR---DSMPGGRMRNVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLESGSVDPMVDLTSQWGDHHAREVDDSDPTEELSEAANKRKEVVGKFNRHARLV 441
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 4.520e-93
Identity = 210/307 (68.40%), Postives = 218/307 (71.01%), Query Frame = 1 
Query:  157 QSAVKNMKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQEAEREKXXXXXXXXXXXXXX--------------------REAGGRLET--GSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 1011
            ++A+K MKWK RGGL+GTASGGQSLRHS     MPGGRMRDVHDARQRAALLAGD+VLTAQYREMVDG VVTEEEFWESRRRTLAEE AK  SR  GTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG   XXXXXXXXXXXX                             XXXXXXXXXXXXXX                    R+A  R     G  D  V      G   +R VDDSDP EE SEAA KRK+VVGKFNRHARLV
Sbjct:   75 KNALKKMKWKTRGGLLGTASGGQSLRHS-----MPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRRQARERKRGPYGGPDFAV-----GGSPRSRGVDDSDPTEELSEAANKRKEVVGKFNRHARLV 371
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.900e-36
Identity = 118/251 (47.01%), Postives = 143/251 (56.97%), Query Frame = 1 
Query:  289 ARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQ---------EAEREKXXXXXXXXXXXXXXREAGGRLE-TGSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 1011
            A++RAALLA D VL AQY ++V+GGV+++ EFW  RR  L  EAA   +RR G  S + +D V          F+L  R IH IF MYP V +AY+A VP E+SEKEFW KY QS Y+ RDRGG                    GA   A DDMF RFAA+               XXXXXXXXXXXX    A  RL  T  VDP VDL +Q+ D+H+R VDD  P EER+ AA  +  V+ + NRHA LV
Sbjct:  147 AQRRAALLARDAVLRAQYADVVEGGVLSDAEFWAGRRGMLEGEAAAARARRQGARSALGAD-VRPAVEGAKQVFRLTPRDIHQIFLMYPAVERAYKAKVPVELSEKEFWVKYFQSQYYTRDRGGA---------------AKAGGATISAGDDMFSRFAAEYEXXXXXXXXXXXXXXXXXXXXXXXXXRGNSAQQRLSGTEGVDPTVDLAAQFSDYHSRPVDDRGP-EERAGAADAQA-VIERLNRHAALV 379
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A2P4XBN0_9STRA (General transcription factor IIH subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBN0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.930e-24
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+      +K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNEGGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 246
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A421FK41_9STRA (BSD domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FK41_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.180e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  102 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 226
[Close]
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A3F2RJ52_9STRA (BSD domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJ52_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.140e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 247
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BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A662X0X0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0X0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.230e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL  +  + G + K+ LNA  IH IF  YP V+ AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:  150 EIKQRAALLAANPTLKRQHTEMVNDGLISEEDFWASRRHLIAAEASK--RQKTGKTSAILTDLAGDNDTGGNVVKYNLNAEVIHQIFIQYPAVYMAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 274
[Close]
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A024FZ08_9STRA (BSD domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ08_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.370e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA D  L  Q+ EMV+ G+++EE+FW++RR  LA EA+K   ++ G  S + +DL  +  S G + K+ LNA  IH IF  YP +  AYQ  VP ++SE EFW+ + +S YF+RDR  G
Sbjct:  131 EIKQRAALLASDTNLKRQHTEMVNQGLISEEDFWQARRHLLANEASK--RQKTGKTSSLLTDLAGKNESGGNVVKYNLNAEVIHQIFVQYPSIHLAYQDQVPDKLSETEFWSAFFKSKYFHRDRKAG 255
[Close]
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A0P1APW3_PLAHL (General transcription factor iih n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APW3_PLAHL)

HSP 1 Score: 109 bits (272), Expect = 8.850e-23
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++    S + +DL A   S G + K+ LNA  IH IFT YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  124 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTAKTSAILTDLAANNDSGGNVVKYNLNAEVIHQIFTQYPAVYMAYQEQVPDKMTETEFWGAFFKSKYFHRDRKAG 248
[Close]
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A0X7YIL8_GLOUL (Putative general transcription factor IIH subunit (Fragment) n=19 Tax=Globisporangium TaxID=1448052 RepID=A0A0X7YIL8_GLOUL)

HSP 1 Score: 107 bits (266), Expect = 1.440e-22
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:  286 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 663
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL  +  + G + K+ LNA  IH IF  YP V  AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:   37 EIKQRAALLAANPTLKRQHTEMVNEGLISEEDFWASRRHLIANEASK--RQKTGKTSAILTDLSGDNDTGGNVVKYNLNAEVIHQIFIQYPAVHLAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT0_ECTSI5.580e-11374.92TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE4.520e-9368.40BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZ40_9STRA6.900e-3647.01BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2P4XBN0_9STRA5.930e-2445.24General transcription factor IIH subunit (Fragment... [more]
A0A421FK41_9STRA4.180e-2345.67BSD domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RJ52_9STRA7.140e-2345.67BSD domain-containing protein n=1 Tax=Phytophthora... [more]
A0A662X0X0_9STRA7.230e-2345.67Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024FZ08_9STRA8.370e-2345.67BSD domain-containing protein n=1 Tax=Albugo candi... [more]
A0A0P1APW3_PLAHL8.850e-2346.46General transcription factor iih n=1 Tax=Plasmopar... [more]
A0A0X7YIL8_GLOUL1.440e-2245.67Putative general transcription factor IIH subunit ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13449contigH-paniculata_contig13449:1950..6703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue4.2e-94
Seed eggNOG ortholog2880.D8LFT0
KEGG koko:K03141
KEGG Pathwayko03022,ko03420,ko05203,map03022,map03420,map05203
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000439,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006351,GO:0006355,GO:0006357,GO:0006360,GO:0006366,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsKOG2074@1,KOG2074@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Exons5
Model size1011
Cds size837
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13449.2147.1prot_H-paniculata_contig13449.2147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13449 2124..6703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.8139546-UTR-H-paniculata_contig13449:1949..21231622929065.8139546-UTR-H-paniculata_contig13449:1949..2123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13449 1950..2123 +
1691480718.2619898-UTR-H-paniculata_contig13449:1949..21231691480718.2619898-UTR-H-paniculata_contig13449:1949..2123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13449 1950..2123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.8330142-CDS-H-paniculata_contig13449:2123..21881622929065.8330142-CDS-H-paniculata_contig13449:2123..2188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 2124..2188 +
1691480718.274967-CDS-H-paniculata_contig13449:2123..21881691480718.274967-CDS-H-paniculata_contig13449:2123..2188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 2124..2188 +
1622929065.8522267-CDS-H-paniculata_contig13449:2834..29731622929065.8522267-CDS-H-paniculata_contig13449:2834..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 2835..2973 +
1691480718.282541-CDS-H-paniculata_contig13449:2834..29731691480718.282541-CDS-H-paniculata_contig13449:2834..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 2835..2973 +
1622929065.8675354-CDS-H-paniculata_contig13449:3173..33611622929065.8675354-CDS-H-paniculata_contig13449:3173..3361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 3174..3361 +
1691480718.2897694-CDS-H-paniculata_contig13449:3173..33611691480718.2897694-CDS-H-paniculata_contig13449:3173..3361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 3174..3361 +
1622929065.8820152-CDS-H-paniculata_contig13449:4663..50151622929065.8820152-CDS-H-paniculata_contig13449:4663..5015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 4664..5015 +
1691480718.2971776-CDS-H-paniculata_contig13449:4663..50151691480718.2971776-CDS-H-paniculata_contig13449:4663..5015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 4664..5015 +
1622929065.9029222-CDS-H-paniculata_contig13449:6610..67031622929065.9029222-CDS-H-paniculata_contig13449:6610..6703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 6611..6703 +
1691480718.3057241-CDS-H-paniculata_contig13449:6610..67031691480718.3057241-CDS-H-paniculata_contig13449:6610..6703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13449 6611..6703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13449.2147.1

>prot_H-paniculata_contig13449.2147.1 ID=prot_H-paniculata_contig13449.2147.1|Name=mRNA_H-paniculata_contig13449.2147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDD
VLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDL
VAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKY
IQSAYFNRDRGGGDGGGDGGGGGSGAKRKNPSGADGGATDDMFLRFAAQE
AEREKAEQEQGATAAGGGGREAGGRLETGSVDPLVDLTSQWGDHHTREVD
DSDPVEERSEAAKKRKQVVGKFNRHARLV
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mRNA from alignment at H-paniculata_contig13449:1950..6703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13449.2147.1 ID=mRNA_H-paniculata_contig13449.2147.1|Name=mRNA_H-paniculata_contig13449.2147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4754bp|location=Sequence derived from alignment at H-paniculata_contig13449:1950..6703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGCGTTTTGTTTTCTGGTCTTGGTGTCTCTTTGTACGTTGCAACCGTG
TGAAACCGCTCTTCACCAAACCGGGCATCTGTGTGTGGTACTCACCTGCC
GTGGGGGTGAAAAACAATACGCCTACATGTTGGATTATGGCAATTAATGA
CGCGTACAAAGTGCGGTGAAGAATATGAAATGGAAAGTCAGGGGCGGGTT
GATGGGTACCGCATCTGGAGGCCAATCTTTACGACACAGGTAGGCAGGCG
CTAAACGCTGAAACGTCTGGAGTTCTATTGATGGGGAGCCGCTGTGTTTA
GTGGGGGTATGGTCATTATTTAGCGTGTGTGTTGAAGGTTGGATAAAGAC
AAATACATCGTCGACGTCGGGAGCTGCCATGTAAAGTGGGGTGTTGTCAG
TATGTAGTATGTGTTTCAAGACTAGATTATGACGATTAACTGTGTATAGG
GGTTTTGTCATTTTTTAGAGTATTTTTGAAAGATTGGATTATGACAAATA
ACTCGTTGACGTAAGAAGAAGGAGTCTCCACGGGTATTGATATATTTCTA
GCCCTCGTAGAGTCTTTTTGTCACGACCTTTTTGGAATATTTTGTGAAAA
CTACAATAAGTGATGATTGCCTCTTTTTTTTTTTTTTATAATGTTCCATT
CGTGTTGCTTGTGTCAAAAAAGTCCGCCCGATTATCATTAGTCTTACTTT
TAGATGTTGACAAAAGCAAGGTTGACGGGACAAACAGTGGTTGATTGGTC
TTTCGTCTCTTTTTTATTTTTATTTTTTTATCGTCTTTCCTTCTCATTTT
TCCAACCATGTGGTTCCACTTGTTTTCGTGTGTATTTTTACCTCTCTTCT
GTATGCGTCTTGTTGTAACTACTGCTGCCAAATAGCGGTCAAAGCGACAG
CATGCCCGGCGGACGCATGCGAGATGTACATGACGCAAGGCAGAGGGCGG
CGCTGCTGGCAGGCGACGATGTGTTGACGGCACAATACCGAGAGATGGTC
GATGGAGGCGTGGTCACCGAAGAGGTATATGACGCGGAAGAGTCTGTGAC
GTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTTGGGCTTGGGC
TTTTATTCCGCAACACTTGTTTTTCTTACAAAACATATTTTTCATTTAAA
AAAAAAAAAAAATCACATGTTGCTTTTCTTCTTTGTCTTTTTTGTGTCGA
TTTTTTTTTTTTTTTCTCTGCCAGGAATTCTGGGAGTCCCGGCGACGAAC
GCTAGCGGAGGAAGCGGCGAAGGTCACTTCCCGGAGGGTGGGGACTCCCA
GCGAAATGCCGAGCGATCTCGTGGCAGAGACCACGTCCACGGGGACCTTG
AAATTCAAGCTCAACGCCCGCACCATCCATAGTATATTCACTATGTATCC
CATCGTTTTCAAGTGAGATATCAACACGGGTACGATGAAGTTGTTCATCC
CCCTGGACAAATACGAAATACTTGCAAATGATTTTCACCAGGAACTGAAA
ATGAGGGGGGGGGGGGGGGTATATGGAATAAAGTACCTACCTACCCCTGT
CCATTCGATTTACGAGTACTATGAGCAGTCGTGGATGGTCCGGGGCAAAT
AGAAAACACGAGCTTACTCTGAAATTCAGGCGAATACATACTTGCATTTT
TTTGTGAAAAAAAAAAAAATGTGCAAGTTTTCGTTTTTGTCAGGGGGGGG
GGGGGTGAATTTGTTATTAGGTGAACATTCTGGATCCGTCGTAACTGCGG
GATGCGGATTTGACTTGTGATTGAAGCTTTACGGGTGGGCGAGTGGGACG
CTTTATTTCTGCCCCCCCCGCCCGCCCGCTATGGATCTACCGTGTAATTT
TACTGGTAAGTCTAGATAAGTTATACTTCAGGTCAGGTGCATAGCCTCAA
CACCCCGCTCTCCTAGTGTGATCTGTTTATGGGTAATGGCAGAGTAATCT
AGTAACTTGAAGACGCTGAGTACACCTCTTCGTGTAGTAAGGTCACATTG
TCATGTTTGCTATATTACATGATTTGATAGTTTGCTACGTTTTGTCTAAT
TGTTTTGCTCCATCACTCCATCATGACTATACGTAATATATATTTTCCCA
AACCAGCTTCTCATATTGTAGACGCTGTCCAGCTGGTGAAGCTGTCCTCG
GCAATTGGTGCAGGTTGTAGTAGTGTCACTATGTTGTAGATGGTGGTAGA
TTTCTTGCTCGTGCATGAAGTGCAGTGCTGGACATGTTGTTGCTATCATG
TATCATGTGGTACGTAGATTTGTATTATGACTGCAGTCTCGGAACACCTT
GTTACGCACACGAAATACCAAATCCACTTGAATCTTTTCACCTGCACTCA
GCCTGCAGTAACTGTGGAGTGGCAGTGGGAGCACAGTGTAAGTGATAGAG
GAGCAAGCGTTTTTTCTTGTGTAGCAGCACTCTTGGCCAAGCGGACACGA
ATATTTCAACAAGAACGCCCATTCAACCGCTGTTTCGCTAGTAACTTTAC
ACTTTTGGTTTTTGATTCGTCAACGTGGAGTGATACACACGGATAGGTTC
TGCTTTTGTGCTCCTTAATTTGTATCGCTCTTTGGACCTTCAGTATGTAG
TTTCACCTGTGCAATACATAATCCCCCCCCCCAACCCACCCACCCACCGA
ACCATCCACCCACCCAACCACCCAACCACCCAACCACCATCACCAACTAA
CATGGACCCTGAAGGGCCTACCAAGCAAACGTGCCGACCGAGATGAGCGA
GAAAGAGTTCTGGACCAAGTACATTCAGAGCGCGTACTTCAACCGAGATA
GGGGGGGCGGGGACGGGGGAGGCGATGGCGGCGGCGGTGGTAGTGGCGCC
AAGCGGAAAAACCCCTCCGGCGCTGACGGCGGGGCAACAGACGATATGTT
CCTCCGCTTCGCGGCGCAAGAAGCGGAGCGAGAAAAGGCCGAGCAGGAGC
AAGGGGCGACCGCGGCAGGCGGGGGGGGCAGGGAGGCCGGGGGGAGGTTG
GAAACTGGGAGCGTGGACCCTTTGGTTGATTTGACATCCCAGTGGGGCGA
TCACCATACCCGTGAGGTGATTTTGATGTGATCGGATGTACTGTAGGTGG
TTGGTTTGAAGAGATGATGAGGTCATGTGTGCAAAAGTATAAGCATAAGA
ACTGCCGTAGATCTGTGTGTGTGTTTGTGTGTGTGCTTGCCCGTTTTCTG
TTTGAAGTCATCTCGGCGGTGGCGGCGGCGGGGAAGGGGGGGGCGGAGGG
GATTGCAAACAAAAAGCCTCCATTTCACCAATCGGAATTCTTTTTCGTGT
GTCAACCCTGCCACAGTTTGATGAACTATTGCTCTGAAGTTCGTGTAGTA
ACTCCGTTGTAACCATGTTGAGTTTATACAGCTGACTTCAACCTTGAGTT
GTGTAATTATACTTCTAAGCGAAGTTAGATGGAGAGGGGGCGGGGGTTGG
TACCACTCTATTCCGTCCGCGTGGTTGCTGTTTTTTGCCACTCGTTCGTC
TGTGTATGTGTATGTGTGAGTCTCTCTCTCTCTCTCTCTCTGTGTGTGTG
TGTGTTTATTTTTTTAGTCTGTTGTCAGTATCGCCACAGATTTTGTTTCT
GCTTTTGAGCATCAAGTATGGTTGTCTAATTATTGAAGGTGCACATGTAG
TACGGAGGCGTTTTTACTCAAAAAGAAAAAAAAAATGCTTGGTCCAAGGT
TGTGAAATTTACAATTTTCCACGCGCTTTTTAACGTTTATACGGCACACA
AAAATCAGGTCAGCACGCACGTCGGTCGTACCAGTAAAAAAATGGAGACA
TTTTTGTATTAGGATTGAAAAGCATGTTCTATTTATCATGTTCGATGGTA
GGATTTTTTCTTTAATAATTCGGGGAAAAAAAAATAAAAAGCTCTATAGA
AAAAAGATTTGTTTACCGTGAAACAATACTTCCCTCTTCCCTGTTCTGCC
AAATATGGCTAAAACAAGTGTGCCCATGTTTATCCATGAAGTATCTCAAC
TGTCCGGCTGTGAGGGGTTGGTTTTAACTGGACATTTTTTTGAAGTCTTG
TAGAGAAAACATGGACTTGGGGAGTCGGACTAGCTAGGGTAGGGAGGAGA
GGGTAAACATGTTCAACGAGTGCCGATCCGCAAATCGGCTATAAAAAAAA
AAGAATCAAGCGTTCACCCGTTCCCAGGGGTGCACGACGCACGATTCACA
ATGGACGTACTGTTCAACAGGGGAAAATATACTCTCCCTGGCCGCTTTGT
AAACCGACTCCAAACTGGATGTAAATAGGACCAAATTACTCCCCGCCCTA
CCGTAGCCCGACCCTTGGGGGAGCTATTCGTTGTATTTCAGTCTTTTCCA
TGAAACAAAAGGAAAACATGTTGAAGAATAGACCGACGGGAAAAATTTCG
CTGCGAATTGCTCAAATGAAACCTGTATTTATATTTGGAGACAGAGTGGT
GTATATCTATATCTATATCTATATCTATATCTATATATATACTTACGTCA
CATTTACATACATGGTTGGATAAAAAGTTTTTCTGCAGGAAAGATCCGCA
AGTGAATGAGAGGCATGCTAGGGGCTTTTTGAACAGATTATCGAACGGCC
TTCTAATCCTTTTGGCTGTGTGCAACATTTGTTGAACGACTGACTGCCTC
TCGGAGCACAGGTGGACGATAGTGACCCTGTCGAAGAGCGATCTGAGGCG
GCGAAAAAGCGAAAACAGGTCGTGGGCAAGTTCAACCGCCACGCCAGGTT
GGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig13449:1950..6703+

>mRNA_H-paniculata_contig13449.2147.1 ID=mRNA_H-paniculata_contig13449.2147.1|Name=mRNA_H-paniculata_contig13449.2147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig13449:1950..6703+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGGAAAGTCAGGGGCGGGTTGATGGGTACCGCATCTGGAGGCCA
ATCTTTACGACACAGATGAAATGGAAAGTCAGGGGCGGGTTGATGGGTAC
CGCATCTGGAGGCCAATCTTTACGACACAGCGGTCAAAGCGACAGCATGC
CCGGCGGACGCATGCGAGATGTACATGACGCAAGGCAGAGGGCGGCGCTG
CTGGCAGGCGACGATGTGTTGACGGCACAATACCGAGAGATGGTCGATGG
AGGCGTGGTCACCGAAGAGCGGTCAAAGCGACAGCATGCCCGGCGGACGC
ATGCGAGATGTACATGACGCAAGGCAGAGGGCGGCGCTGCTGGCAGGCGA
CGATGTGTTGACGGCACAATACCGAGAGATGGTCGATGGAGGCGTGGTCA
CCGAAGAGGAATTCTGGGAGTCCCGGCGACGAACGCTAGCGGAGGAAGCG
GCGAAGGTCACTTCCCGGAGGGTGGGGACTCCCAGCGAAATGCCGAGCGA
TCTCGTGGCAGAGACCACGTCCACGGGGACCTTGAAATTCAAGCTCAACG
CCCGCACCATCCATAGTATATTCACTATGTATCCCATCGTTTTCAAGAAT
TCTGGGAGTCCCGGCGACGAACGCTAGCGGAGGAAGCGGCGAAGGTCACT
TCCCGGAGGGTGGGGACTCCCAGCGAAATGCCGAGCGATCTCGTGGCAGA
GACCACGTCCACGGGGACCTTGAAATTCAAGCTCAACGCCCGCACCATCC
ATAGTATATTCACTATGTATCCCATCGTTTTCAAGGCCTACCAAGCAAAC
GTGCCGACCGAGATGAGCGAGAAAGAGTTCTGGACCAAGTACATTCAGAG
CGCGTACTTCAACCGAGATAGGGGGGGCGGGGACGGGGGAGGCGATGGCG
GCGGCGGTGGTAGTGGCGCCAAGCGGAAAAACCCCTCCGGCGCTGACGGC
GGGGCAACAGACGATATGTTCCTCCGCTTCGCGGCGCAAGAAGCGGAGCG
AGAAAAGGCCGAGCAGGAGCAAGGGGCGACCGCGGCAGGCGGGGGGGGCA
GGGAGGCCGGGGGGAGGTTGGAAACTGGGAGCGTGGACCCTTTGGTTGAT
TTGACATCCCAGTGGGGCGATCACCATACCCGTGAGGGCCTACCAAGCAA
ACGTGCCGACCGAGATGAGCGAGAAAGAGTTCTGGACCAAGTACATTCAG
AGCGCGTACTTCAACCGAGATAGGGGGGGCGGGGACGGGGGAGGCGATGG
CGGCGGCGGTGGTAGTGGCGCCAAGCGGAAAAACCCCTCCGGCGCTGACG
GCGGGGCAACAGACGATATGTTCCTCCGCTTCGCGGCGCAAGAAGCGGAG
CGAGAAAAGGCCGAGCAGGAGCAAGGGGCGACCGCGGCAGGCGGGGGGGG
CAGGGAGGCCGGGGGGAGGTTGGAAACTGGGAGCGTGGACCCTTTGGTTG
ATTTGACATCCCAGTGGGGCGATCACCATACCCGTGAGGTGGACGATAGT
GACCCTGTCGAAGAGCGATCTGAGGCGGCGAAAAAGCGAAAACAGGTCGT
GGGCAAGTTCAACCGCCACGCCAGGTTGGTTGTGGACGATAGTGACCCTG
TCGAAGAGCGATCTGAGGCGGCGAAAAAGCGAAAACAGGTCGTGGGCAAG
TTCAACCGCCACGCCAGGTTGGTT
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