mRNA_H-paniculata_contig13439.2146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13439.2146.1
Unique NamemRNA_H-paniculata_contig13439.2146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13439.2146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13439contigH-paniculata_contig13439:1733..4209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size220
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13439.2146.1prot_H-paniculata_contig13439.2146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13439 1794..4188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.6860545-UTR-H-paniculata_contig13439:1732..17931622929065.6860545-UTR-H-paniculata_contig13439:1732..1793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13439 1733..1793 +
1691480718.2201183-UTR-H-paniculata_contig13439:1732..17931691480718.2201183-UTR-H-paniculata_contig13439:1732..1793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13439 1733..1793 +
1622929065.7588413-UTR-H-paniculata_contig13439:4188..42091622929065.7588413-UTR-H-paniculata_contig13439:4188..4209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13439 4189..4209 +
1691480718.2510467-UTR-H-paniculata_contig13439:4188..42091691480718.2510467-UTR-H-paniculata_contig13439:4188..4209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13439 4189..4209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.701178-CDS-H-paniculata_contig13439:1793..18291622929065.701178-CDS-H-paniculata_contig13439:1793..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 1794..1829 +
1691480718.2288396-CDS-H-paniculata_contig13439:1793..18291691480718.2288396-CDS-H-paniculata_contig13439:1793..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 1794..1829 +
1622929065.718781-CDS-H-paniculata_contig13439:2136..22281622929065.718781-CDS-H-paniculata_contig13439:2136..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 2137..2228 +
1691480718.236237-CDS-H-paniculata_contig13439:2136..22281691480718.236237-CDS-H-paniculata_contig13439:2136..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 2137..2228 +
1622929065.7373374-CDS-H-paniculata_contig13439:4178..41881622929065.7373374-CDS-H-paniculata_contig13439:4178..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 4179..4188 +
1691480718.2435906-CDS-H-paniculata_contig13439:4178..41881691480718.2435906-CDS-H-paniculata_contig13439:4178..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13439 4179..4188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13439.2146.1

>prot_H-paniculata_contig13439.2146.1 ID=prot_H-paniculata_contig13439.2146.1|Name=mRNA_H-paniculata_contig13439.2146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MKNKAGPPKKPETPKIRQLNFKVTSTTMYYPPKRGKTRGASPSAS*
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mRNA from alignment at H-paniculata_contig13439:1733..4209+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13439.2146.1 ID=mRNA_H-paniculata_contig13439.2146.1|Name=mRNA_H-paniculata_contig13439.2146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2477bp|location=Sequence derived from alignment at H-paniculata_contig13439:1733..4209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGTTGCAATCCTTGATTCCGCGGTTGACGGTGAAGGAAAGGCCACGC
CAGCGGTTGCTATGAAGAATAAAGCCGGCCCACCCAAGAAGCCCGAGGTA
TGAGATCAATTGATACACACGTACTTGAGATACACCGTGAGCTTAGTTTG
TCAGCCGGGGAAAGTCTTGGAGGTACCGTTGTGCGTTTCCGCAATGCGTA
ATATTTCTGGCACCCCGGACATTAAAAGGTTGCGTTTCTGTTAGGCAAGC
AGAGGCAACACTGCTGCTGCTTTCACCCCTTCTTGTAATTTTCACATTTA
CATTGTGATTGCCTTGGCAAGTACTTGGACCTCCATAGTGGATACTCCCC
CCCACCGCTCGCCGTCCCCTTTCACCCCGCGAACAATGTCGTTTGCCGGA
TTAGACGCCGAAGATCCGACAGCTAAACTTCAAGGTCACATCGACGACGA
TGTACTACCCCCCGAAAAGGGGGAAAACACGCGGAGCGTCACCCAGGTGC
GTATGGTGTCGGTGAAGATGTCATTGGCATGGCTTACTCATAGCTATTGT
TGGGGTCAGAGGGGGAGTCGACGCATCCTCCTGTTGGGGGGTGGTAATTT
TGTTTAACGAAGGCCACTTTGCAAAAGTGGTACAATACTAACGCGAATGG
CAACCATGTCGATTGTATGTATTTGTGCATCCCTAACGGTGCACAGTCGC
CAAAAAAGACAAAAACATATTCGCCTGAAGGTCCATTCATCCACGTTTTT
ACTCTTCATGCACCCCGGGCAAGCCATCTATGACTGGCTCTGTCTCGGAA
TTTTAGTTGTAAGAACGAATAGAGAGGGTGGATCAAAAACTCGGAGTTTT
TCGATGTGCCCGAATATTCTGAACTTTCAAGCGACCATACGTGGAAGAAA
AAGAGGAATCATCGTGATCGAATAGTCCCAATAATTCTTGTTCATTCGTC
CAGCGGTTGAATTATTTTTTCATCCTCAAAGAACAGCAAGAAAAGATTTT
ATGTGGCGAAAAGGAACGGTATCTACGTACCTACCTGCTGACTTACCGAC
CTACCCACCGAGAGACTTAGTGGTTAAATCTAGGAGCTATCCCAAGGACC
CCGATCTTGGTCCAGCATCCCATCCCTGAAATCAGCGCTGCGACTGCCCC
ACCACGTGGAACAGCGAATTTGTCGCTCTCCTTTTCCCTTAAATCGCTGA
TTAGTGGTGTAATGTTTATTAAATCAACTATTAATAACAGGAGCTAAATC
CAGGGTTTGAATCCCACATCTACTTGCCTACTTGTTGACCCACCAACTCA
CCCTACCTACCTACCTACCTACCTACCTACCTACCTACCTACCTATCAAC
CCACCTGCGAGGGAAGGCATTGTCGCGGCGCCGACGCTAACAGCCATTCA
AATTGCGCAACGAGAAATTCCTGGATTTGGTATTGTTCCAAGATTTCGAT
GGATATATCCAGTCGACGTCGTCATATACCGAAAGCGCTAAGTACCTACA
ACACCCATCCTCCGGCGGTCCTCCGGCGGTGGAAAAAATACCCCGCAATA
CCCCGTCGTTGGTGACGTAGATAGCCCGCCGCTGTTTCAATGGCGCGAGA
ATCCGACGACGACGTTAAGAAGGATGTTCTTTTATCGATATGCATGATTG
TGAGTCTCAACTAGGCCTACACTGTCTTTGTGTTTGAAGGTGGCACGTAA
GCGCCGAAGCTGCGAGTAGTAACCCCCCGAGGCACCTACCTGCCTGTGTG
GATGACGGAGACTTCGGCCGAGGAAAAATTGGTGAAAAAATGCGCAATAG
AGCTGGCGTACGAAAGCTGGATGAGAAAATTCACAATATAAGGGTCAGAG
AAGGTTTTGTCCTGGTCTCCTGGGCTTGAAAAAAAATAAGTCCTTAACTA
TGTGGCAGACATGGTGCTTTTGTCGCGTATGTCCACAGGGTAGCATTTTG
TTATTCTGAAAATTGGAAATACCGATATGCTTGTTACATTCGGCTTATTT
TTCAAAAAATTATAAAGAAAAATATTCATAAGAGGAACGACTGTCGAAAA
AAAGTATATGATTTTCAAGAGATTACTCGGTCCTAGCGGAGGGCGGGGTC
CAGGAGGCAGGGGGGTGATCTGTTTTCCATTTCGCCCTGCTTGTTGCCGT
TTAAGCGGTGGACACCCAAACGAATACTCACGAAAATTTTGTTTCTTGAA
TACGGGTTCATTTTTATTGGCACGAGAGATCTTGTTCACGATTTTTATTT
ATGAATATATATGTAAATGCGCCGGCGCTGGCAGCGGCGAAAGCGGCGGC
CATAGTGGCAAGCCGGGATTCGCTCGCCGCGGGCGGAGATGCCGCCTGGC
GACGAGTATAACCCCGAAACATTGATAGCGGTTGTGAAGTTCAAGAACAC
CCTGTCCGCGGCGGGTAACGATGGCCTACGTTTCTCCCATCTGCAGTGCA
TCCTGAACACCTCGGCGGGTAAGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13439:1733..4209+

>mRNA_H-paniculata_contig13439.2146.1 ID=mRNA_H-paniculata_contig13439.2146.1|Name=mRNA_H-paniculata_contig13439.2146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig13439:1733..4209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAATAAAGCCGGCCCACCCAAGAAGCCCGAGATGAAGAATAAAGC
CGGCCCACCCAAGAAGCCCGAGACGCCGAAGATCCGACAGCTAAACTTCA
AGGTCACATCGACGACGATGTACTACCCCCCGAAAAGGGGGAAAACACGC
GGAGCGTCACCCAGACGCCGAAGATCCGACAGCTAAACTTCAAGGTCACA
TCGACGACGATGTACTACCCCCCGAAAAGGGGGAAAACACGCGGAGCGTC
ACCCAGTGCATCCTGATGCATCCTGA
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