mRNA_H-paniculata_contig13437.2145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13437.2145.1
Unique NamemRNA_H-paniculata_contig13437.2145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13437.2145.1 vs. uniprot
Match: A0A8F0FDJ8_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDJ8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.240e-27
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 MLPNLIHRLRHGLMAYHVSVRFEEARFCIKNFNVLWEEGLIRRCKKMDNGIIFIFLLYCERYSR 192
            ML +L++RLR+GLM YH+SV FEEARFC+K  NVLW+EGLIR  KKMDNGIIFIFLLYC  YS+
Sbjct:    1 MLSSLMYRLRNGLMGYHISVSFEEARFCVKFLNVLWDEGLIRGYKKMDNGIIFIFLLYCGGYSQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13437.2145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8F0FDJ8_9PHAE6.240e-2773.44Ribosomal protein S8 n=1 Tax=Protohalopteris sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13437contigH-paniculata_contig13437:3458..3658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.6348596-CDS-H-paniculata_contig13437:3457..36581622929065.6348596-CDS-H-paniculata_contig13437:3457..3658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13437 3458..3658 +
1691480718.2077565-CDS-H-paniculata_contig13437:3457..36581691480718.2077565-CDS-H-paniculata_contig13437:3457..3658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13437 3458..3658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13437.2145.1prot_H-paniculata_contig13437.2145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13437 3458..3658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13437.2145.1

>prot_H-paniculata_contig13437.2145.1 ID=prot_H-paniculata_contig13437.2145.1|Name=mRNA_H-paniculata_contig13437.2145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLPNLIHRLRHGLMAYHVSVRFEEARFCIKNFNVLWEEGLIRRCKKMDNG
IIFIFLLYCERYSRGSP
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mRNA from alignment at H-paniculata_contig13437:3458..3658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13437.2145.1 ID=mRNA_H-paniculata_contig13437.2145.1|Name=mRNA_H-paniculata_contig13437.2145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig13437:3458..3658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCCCAATTTGATCCATCGATTACGACATGGGTTAATGGCTTATCA
TGTTAGTGTACGTTTTGAAGAGGCTCGTTTTTGTATTAAAAATTTTAATG
TTTTATGGGAAGAAGGATTGATTCGACGTTGTAAAAAAATGGATAATGGA
ATTATTTTTATTTTTCTTCTGTATTGTGAGAGATATTCACGGGGTAGCCC
C
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Coding sequence (CDS) from alignment at H-paniculata_contig13437:3458..3658+

>mRNA_H-paniculata_contig13437.2145.1 ID=mRNA_H-paniculata_contig13437.2145.1|Name=mRNA_H-paniculata_contig13437.2145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig13437:3458..3658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCCCAATTTGATCCATCGATTACGACATGGGTTAATGGCTTATCA
TGTTAGTGTACGTTTTGAAGAGGCTCGTTTTTGTATTAAAAATTTTAATG
TTTTATGGGAAGAAGGATTGATTCGACGTTGTAAAAAAATGGATAATGGA
ATTATTTTTATTTTTCTTCTGTATTGTGAGAGATATTCACGGGGTAGCCC
CATGCTTCCCAATTTGATCCATCGATTACGACATGGGTTAATGGCTTATC
ATGTTAGTGTACGTTTTGAAGAGGCTCGTTTTTGTATTAAAAATTTTAAT
GTTTTATGGGAAGAAGGATTGATTCGACGTTGTAAAAAAATGGATAATGG
AATTATTTTTATTTTTCTTCTGTATTGTGAGAGATATTCACGGGGTAGCC
CC
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