mRNA_H-paniculata_contig1343.2143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1343.2143.1 vs. uniprot
Match: D8LTK9_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK9_ECTSI) HSP 1 Score: 646 bits (1667), Expect = 6.100e-214 Identity = 477/846 (56.38%), Postives = 568/846 (67.14%), Query Frame = 1
Query: 1 LLEAGASTEATDTEGNTPLLTAASVGCTVLCKHLLARGAVAVARNYADVSTLFLATIG----QNPECVEALLQAGASPDERGDGGATALHMAARYGQVRIITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAYDVHIGQRNWNELTPFGESRMNNHVEVASFLSECFTPLQLGSSAQLQAGGKTPS-GAKSGDQ-------------EAGDE---WDKEIESKAHGWEQAWDHETQRLYYYNVETQETSFTAPFKTSAARVESLRSGAEVPYRRKVAAVKGENLLGLSDYRYEIEEEREQLNHLKLRHKAASKVQSVWRMFVAHKTASRLRRKHRSAERIQREVRRFLGKCRREHNLRVMMACAVLQRTLRGHRTRREFQKSLKVATRAKDERHLNRILTSLFRGHLYGRKPARRLRAAREAYNWGAEEWESALYNSGGPKAALATFTMEECEWSEHYLQGSIDVTFFRNVTTGVYAWEKPQRWRAHDEYEFDQREHARIHGFTEEEAHVTMCLQAAWRGKMARRYFRLLLRGQRICKGAEREYFDNPESLRCQINYVLFTHVFQKDYERARLVYANALRRMEERGPDLPLLLYAFAIFCLVTREEDMPGIQAMVERANLAQSGALQDTK-------PPDTNNKTRNPKEFALAEAGFFRFAAYNMNDAESWHNYAACRQLVYGDLCAASEYYLKAIQINPKDVNIQINYQSLLDTFPEESEGSSTYEGVTLHHLQQVSN 2454
LL+AGA +A D +GNTPLLTAA G VLC+ LLARGA ARN + + L LA G +N CV+ LL AG+ P E G G ALH++A GQ ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YDV IGQRNW E TPFGE+RMNNH +VA FLS F L GGK PS G +G + G+E WDKE+E K GWE WD + QR YY N ET ETS+TAPFK SA RVE LR GAEV Y RKVA V GE+LLGLSDYR +EE+ +L+ KLRH+AA +QS WR +A A+R R++ R A I R++RRFLG+CRR+ +VM AC +LQ+ +RG RR ++ R +D LNR++T ++RGHLYGR+PAR+LRA REA WG EWE+A +++G P L TF +W + LQGS+DV F+RN + Y W+ P+ W++ D ++F QREH RIHGFT EEA LQ AWRGK +R +F LL+R Q+ICKGAE Y +P++LR QINY+LFTHV KDY R+R++Y AL ME+RGPD+ LLL+AFAIFC VTREED I A VERA ++GA +D PP++ RNPK FALAEAGFFRFAAYN NDAESWHNYAACRQL YGD ASE YLKAI+ NPKD +Q NYQ+L+DTFPE S+GSST+E ++ HH Q N
Sbjct: 2 LLDAGAKPDAVDGDGNTPLLTAAKTGAAVLCEILLARGADPRARNKSGSNALLLAVDGDNSAENSACVQVLLDAGSDPHETGPDGTVALHVSAHKGQTEVLWSLLQHGARVDVADVSGLTPLAYAVSNDHGDATGLLCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDVRIGQRNWQEYTPFGEARMNNHSQVAEFLSGSFVRL----------GGKGPSLGGNNGASTTIAELDDAQXXXQGGNEARGWDKEMEDKVQGWETEWDQDKQRFYYVNAETGETSYTAPFKISADRVEELREGAEVEYLRKVAPVNGESLLGLSDYREAFQEEKTELDTHKLRHQAAVVIQSCWRARMARIEANRRRKERRCASVINRQMRRFLGRCRRKRLGQVMSACLMLQKIVRGCMARRRHREGEAEMKRLRDANTLNRLVTRVYRGHLYGRRPARQLRAQREASWWGPSEWEAARHDAGDP---LRTFFGWTGQWEAYLLQGSVDVMFYRNAASAEYTWDLPEEWQSQDAFDFYQREHTRIHGFTAEEAEAATLLQKAWRGKTSRNHFNLLMRAQKICKGAEAAYLADPDNLRSQINYILFTHVIDKDYNRSRILYTTALAAMEQRGPDVQLLLFAFAIFCFVTREEDFVSILATVERA--IEAGAARDDADGIGRRWPPESYTSRRNPKRFALAEAGFFRFAAYNTNDAESWHNYAACRQLAYGDYAGASECYLKAIEKNPKDPKLQANYQTLMDTFPEHSQGSSTFESLSTHHQSQAEN 832
BLAST of mRNA_H-paniculata_contig1343.2143.1 vs. uniprot
Match: A0A7S1TPL5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPL5_9STRA) HSP 1 Score: 165 bits (418), Expect = 3.410e-38 Identity = 96/280 (34.29%), Postives = 143/280 (51.07%), Query Frame = 1
Query: 1543 WESALYNSGGPK-AALATFTMEECEWSEHYL-QGSIDVTFFRNVTTGVYAWEKPQRWRAHDEYEFDQREHARIHGFTEEEAHVTMCLQAAWRGKMARRYFRLLLRGQRICKGAEREYFDNPESLRCQINYVLFTHVFQKDYERARLVYANALRRMEERGPDLPLLLYAFAIFCLVTREEDMPGIQAMVERANLAQSGALQDTKPPDTNNKTRNPKEFALAEAGFFRFAAYNMNDAESWHNYAACRQLVYGDLCAASEYYLKAIQINPKDVNIQINYQSLL 2376
+E AL N+ K AA+ W + L + DVTF+ + T +W++ Q W D+ E + GFT E+ + Q+ WR + RR FRL+L +RI Y NP + NY L+ +F +DY+RAR+++ +++ M ERGPD +L+ +AIF +EED I +V RA +A D + P+ F +A+ GFFR AA +ND SWH YA CRQ VY D+ A E Y+K I+ +P D I N ++ +
Sbjct: 813 FEEALENATAAKEAAMKAKRFAAVVWRDETLPRHPRDVTFYCHTLTRRCSWDQTQDWLDQDKKEAHEHMQLSSKGFTSEQETAAIRFQSLWRARQIRRNFRLILTARRIMAECSDAYLRNPNDPVAKANYALYCQLFLQDYDRARMMWLSSMEYMVERGPDNAFVLFGWAIFLAQQQEEDWADIMHLVNRARIA-----------DRSGTDPRPRHFLMADLGFFRQAAIELNDGPSWHAYALCRQFVYDDVAGAEEAYVKGIERSPHDGRILENLETFV 1081
BLAST of mRNA_H-paniculata_contig1343.2143.1 vs. uniprot
Match: A0A7R9YF75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF75_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 7.920e-20 Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query: 1945 FQKDYERARLVYANALRRMEERGPDLPLLLYAFAIFCLVTREEDMPGIQAMVERANLAQSGALQDTKPPDTNNKTRNPKEFALAEAGFFRFAAYNMNDAESWHNYAACRQLVYGDLCAASEYYLKAIQINPKD 2343
F +D +RAR ++ + + M RGPD +L+ +AIF EED + +V RA +A G P+ F LAE GF+R AA + D SWH YA CRQ VY D+ + Y++A++ P D
Sbjct: 1 FLQDVDRARYLWRSLVSAMHNRGPDNAFVLFGWAIFLAAHHEEDWDDVMELVRRARIADRGGSDP-----------RPRHFLLAELGFYRQAALQLQDGASWHAYALCRQFVYDDIVNTEDAYVRAVEAAPHD 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1343.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1343.2143.1 >prot_H-paniculata_contig1343.2143.1 ID=prot_H-paniculata_contig1343.2143.1|Name=mRNA_H-paniculata_contig1343.2143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=825bp LLEAGASTEATDTEGNTPLLTAASVGCTVLCKHLLARGAVAVARNYADVSback to top mRNA from alignment at H-paniculata_contig1343:84..15748- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1343.2143.1 ID=mRNA_H-paniculata_contig1343.2143.1|Name=mRNA_H-paniculata_contig1343.2143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15665bp|location=Sequence derived from alignment at H-paniculata_contig1343:84..15748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1343:84..15748- >mRNA_H-paniculata_contig1343.2143.1 ID=mRNA_H-paniculata_contig1343.2143.1|Name=mRNA_H-paniculata_contig1343.2143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4950bp|location=Sequence derived from alignment at H-paniculata_contig1343:84..15748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |