mRNA_H-paniculata_contig13426.2141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13426.2141.1
Unique NamemRNA_H-paniculata_contig13426.2141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S3B130_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B130_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 8.050e-36
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G ELSLVD M+ PFLERM+ASLPY+K L +R  P WP ++RWF AM++R  YR  +SD+YTH HDLPPQ+GRC    EA    D IDG DG
Sbjct:   41 GSELSLVDCMFAPFLERMAASLPYYKALPLRRQPEWPCLERWFLAMEARPSYRHIQSDFYTHVHDLPPQVGRCAAVPEAAAFADAIDGTDG 131
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S0M898_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M898_9CRYP)

HSP 1 Score: 134 bits (338), Expect = 8.460e-36
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G E S+VD MY PFLERM+ASLPY+KGL +R NPRWP+++ WFDAM+S   + G + DYYTHCHDLPPQIG C     A P  D IDG+ G
Sbjct:  304 GSETSMVDCMYAPFLERMAASLPYYKGLVIRGNPRWPHVNAWFDAMESLPSFSGIQGDYYTHCHDLPPQIGNCFSHPSAQPYADAIDGRGG 394
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BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S3VY26_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VY26_9SPIT)

HSP 1 Score: 135 bits (340), Expect = 1.190e-35
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEA-EAVPLKDEIDGKDGK 276
            GKELS+VD M+ PFLERM+ASLPY+KGL +R  P+WPN++ WF AM+S+  YR   SD+YTHCHDLPPQIGRC V   EA    D IDG DG+
Sbjct:  260 GKELSMVDCMFAPFLERMAASLPYYKGLPIRRQPQWPNVEAWFLAMESKPSYRNIASDFYTHCHDLPPQIGRCQVSGPEAQAFADRIDGADGR 352
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BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A0G4EGA8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EGA8_VITBC)

HSP 1 Score: 134 bits (337), Expect = 3.170e-35
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G ++SLVDLMYT FLERM+ASLPYFKGL VR   RWPN++RWFDAM+SR  ++  KSDYYTHC DLPPQ+G C    E  P +  IDG++G
Sbjct:  266 GDDISLVDLMYTSFLERMAASLPYFKGLVVRGEGRWPNVERWFDAMESRPTFKYIKSDYYTHCQDLPPQVGPCGKLLEGAPFRATIDGQNG 356
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S4GL72_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GL72_9EUGL)

HSP 1 Score: 130 bits (326), Expect = 8.940e-34
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDGK 276
            G    +VD+M+ PFLER++AS+PYFKGL VR NPRWP+I+ W+DAMD R  Y   KSD+YTHCHDLPPQ+G C   A+A   + E+DG+D K
Sbjct:  233 GDGFGIVDIMFAPFLERIAASIPYFKGLPVRRNPRWPHINAWYDAMDRRPAYAPTKSDFYTHCHDLPPQLGGCHSAADAKRCQAEVDGQDAK 324
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S4EUZ7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EUZ7_CHRCT)

HSP 1 Score: 129 bits (323), Expect = 2.610e-33
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G+++SLVD M+ PFLERM+ASLPY+KGL VR N RWP++  WF AM++R  +R  +SDYYTH HDLPPQ+GRC   AEA      IDG+DG
Sbjct:  248 GEDISLVDCMFAPFLERMAASLPYYKGLLVRTNSRWPHVQCWFSAMEARPSFRYIRSDYYTHAHDLPPQVGRCYSTAEAEAYAAAIDGRDG 338
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A250X2Q2_9CHLO (GST N-terminal domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2Q2_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 5.550e-33
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDGK 276
            G+++SLVD+ +TP LER +ASL Y+KG  +R   RWP IDRWFDAM+ R+ Y G +SDYYTHCHDLPPQ+G C + ++   +   +DG+DG+
Sbjct:  115 GQDISLVDITFTPMLERAAASLAYYKGYYMRGQGRWPAIDRWFDAMEQRDTYMGTRSDYYTHCHDLPPQLGGCEMNSDGKAVSAMLDGRDGR 206
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A7S3W535_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W535_EMIHU)

HSP 1 Score: 125 bits (315), Expect = 2.730e-32
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G +LSLVD M+ PFLERM+ASLPY+K L +R N  WP I++WF AM+SR  YR  +SD+YTH HDLPPQIGRC    EA  L  EIDG DG
Sbjct:  204 GADLSLVDCMFAPFLERMAASLPYYKALTLRRNDGWPRIEQWFLAMESRPSYRHVQSDFYTHVHDLPPQIGRCQSVPEAEELAAEIDGSDG 294
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: L1J2Y2_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2Y2_GUITC)

HSP 1 Score: 125 bits (313), Expect = 2.800e-32
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDGKL 279
            G  +SLVD M+ PFLERM+AS+PY+KGL +R   RWP+++ WF AM+ R+ ++G +SDYYTHCHDLPPQIG C    EA   + EIDG+  +L
Sbjct:  183 GDRISLVDFMFAPFLERMAASVPYYKGLVIRDPARWPHVELWFKAMEERDSFKGIQSDYYTHCHDLPPQIGNCFSHPEAEKYRKEIDGELWRL 275
[Close]
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Match: A0A090M1R4_OSTTA (Thioredoxin-like fold n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M1R4_OSTTA)

HSP 1 Score: 124 bits (312), Expect = 7.290e-32
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 GKELSLVDLMYTPFLERMSASLPYFKGLRVRANP-RWPNIDRWFDAMDSREVYRGAKSDYYTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDG 273
            G E +LVD+ YTPFLERM+AS+ Y+KGL++  N  RWPN+D+WF AM  R+VYRG KSDYYT+ HDLPPQ+G C    + V  +D IDG +G
Sbjct:  212 GAEFTLVDIAYTPFLERMAASILYYKGLKIEGNGGRWPNLDKWFAAMAQRKVYRGIKSDYYTNAHDLPPQLGGCAENGDNVQARDAIDGVNG 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13426.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3B130_9EUKA8.050e-3660.44Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0M898_9CRYP8.460e-3661.54Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3VY26_9SPIT1.190e-3563.44Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A0G4EGA8_VITBC3.170e-3563.74Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4GL72_9EUGL8.940e-3458.70Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4EUZ7_CHRCT2.610e-3360.44Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A250X2Q2_9CHLO5.550e-3354.35GST N-terminal domain-containing protein n=1 Tax=C... [more]
A0A7S3W535_EMIHU2.730e-3262.64Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
L1J2Y2_GUITC2.800e-3255.91Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A090M1R4_OSTTA7.290e-3258.70Thioredoxin-like fold n=2 Tax=Ostreococcus tauri T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13426contigH-paniculata_contig13426:3063..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog55529.EKX42450
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chloride channel activity
EggNOG OGsKOG1422@1,KOG1422@2759
EC2.5.1.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons2
Model size279
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13426.2141.1prot_H-paniculata_contig13426.2141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13426 3090..3519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.7477856-UTR-H-paniculata_contig13426:3062..30891622929064.7477856-UTR-H-paniculata_contig13426:3062..3089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13426 3063..3089 +
1691480717.8730974-UTR-H-paniculata_contig13426:3062..30891691480717.8730974-UTR-H-paniculata_contig13426:3062..3089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13426 3063..3089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.765742-CDS-H-paniculata_contig13426:3089..31841622929064.765742-CDS-H-paniculata_contig13426:3089..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13426 3090..3184 +
1691480717.8879108-CDS-H-paniculata_contig13426:3089..31841691480717.8879108-CDS-H-paniculata_contig13426:3089..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13426 3090..3184 +
1622929064.7807572-CDS-H-paniculata_contig13426:3362..35191622929064.7807572-CDS-H-paniculata_contig13426:3362..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13426 3363..3519 +
1691480717.8978314-CDS-H-paniculata_contig13426:3362..35191691480717.8978314-CDS-H-paniculata_contig13426:3362..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13426 3363..3519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13426.2141.1

>prot_H-paniculata_contig13426.2141.1 ID=prot_H-paniculata_contig13426.2141.1|Name=mRNA_H-paniculata_contig13426.2141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MYTPFLERMSASLPYFKGLRVRANPRWPNIDRWFDAMDSREVYRGAKSDY
YTHCHDLPPQIGRCVVEAEAVPLKDEIDGKDGKL
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mRNA from alignment at H-paniculata_contig13426:3063..3519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13426.2141.1 ID=mRNA_H-paniculata_contig13426.2141.1|Name=mRNA_H-paniculata_contig13426.2141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at H-paniculata_contig13426:3063..3519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGGAGCTCTCCCTAGTGGACTTGATGTATACACCTTTCCTAGAGCG
AATGAGTGCTTCTCTACCCTACTTCAAGGGCCTCCGTGTCAGGGCAAACC
CGAGATGGCCGAACATTGACAGGTGCAGTAAGTAGCTCTGTCTGTCTGTC
TGACTGTCTCTCCTCGTCCCTCTCTCTACTCCCTCCCCCCTCTCTCCCTG
TGTTTAGTACTAGATACATGCCCATCCGTATTCGCGCACCTTCAGCTAGC
TCTCTCTCTCTCTTGTCCCCCCCCCCCCCCCCCCCCACGCGCGCAAAAAG
ATGGTTCGATGCCATGGACTCGCGAGAGGTATACCGAGGAGCGAAATCAG
ACTACTACACGCACTGTCATGATTTGCCTCCGCAGATTGGACGGTGCGTG
GTGGAGGCGGAGGCAGTACCTTTGAAGGATGAGATCGATGGCAAAGACGG
TAAGCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig13426:3063..3519+

>mRNA_H-paniculata_contig13426.2141.1 ID=mRNA_H-paniculata_contig13426.2141.1|Name=mRNA_H-paniculata_contig13426.2141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig13426:3063..3519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATACACCTTTCCTAGAGCGAATGAGTGCTTCTCTACCCTACTTCAA
GGGCCTCCGTGTCAGGGCAAACCCGAGATGGCCGAACATTGACAGATGTA
TACACCTTTCCTAGAGCGAATGAGTGCTTCTCTACCCTACTTCAAGGGCC
TCCGTGTCAGGGCAAACCCGAGATGGCCGAACATTGACAGATGGTTCGAT
GCCATGGACTCGCGAGAGGTATACCGAGGAGCGAAATCAGACTACTACAC
GCACTGTCATGATTTGCCTCCGCAGATTGGACGGTGCGTGGTGGAGGCGG
AGGCAGTACCTTTGAAGGATGAGATCGATGGCAAAGACGGTAAGCTTATG
GTTCGATGCCATGGACTCGCGAGAGGTATACCGAGGAGCGAAATCAGACT
ACTACACGCACTGTCATGATTTGCCTCCGCAGATTGGACGGTGCGTGGTG
GAGGCGGAGGCAGTACCTTTGAAGGATGAGATCGATGGCAAAGACGGTAA
GCTT
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