mRNA_H-paniculata_contig13423.2139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI) HSP 1 Score: 439 bits (1130), Expect = 2.520e-130 Identity = 393/1149 (34.20%), Postives = 492/1149 (42.82%), Query Frame = 1
Query: 1 ALFFQGRPRALSNFVHSEGKGSEAVGGAPRRGRRLQVGAAAVIGGQSGEDDEGDRWLWEGPGPPSVWYAIDMSGREVGASMTVSLVVNSSFP----TAGSSSSVGFPYGPYGWTMGPHQSNEYYA---GEGGDRDVLS--PVDEASVF-LSVAMRMGALPVLDANGTGLQDTWVLHSSHALSEANEVED--PDHYTTAALVSRSSDEQVHPFWSTTYRWNLTHPPPLAGHVWGAGGGSSGGWGLSXXXXXXXXXXXXXTLFLAVYAECVFTSDHDGSGDGGEGRRG-----CPRRAEEXXXXXXXXXXXXXXXXAADGLWALGVAPRVEFRYCDKETCPMARSVCRVSNGDGGGSNDYVKASKCYCTYGFGGEACAQRIVSYASIIWQTLLLVGTNLAVVPGVRTALSLGATVGSAPAVVLALNGAASAVYHMCDLELTCAGGILSYHALQALDFFFSFFSVAVLVLHLCPMPWDDPLTVAARNYRSPSPP--GATLGAEDTDDPFFTRGALDDVP------------------------------------------------------------------------------------------EKGELDYIVGGTGGGDGSVVGDMYDNLGLDTMRTAVRTHNFYRRGSGASGDVGGGSSRASGTISNRAAMLNNRGSGGAWTGDFRSHGVHHSQGSGQSRRDGANLSSDRASSNDVFEAKEETIGNITRQAAARVGDGGSRGSGTRLASLYVCLIPPLLTAVADSPTAGTNLALVFAVCGGLLAFSWGRLVARDMHDLEAKAAREEWVSSRSVAASAGAXXXXXXXXXXXXASAAIGDEEDGGAAEEIDGRENDGKHETRALMCXXXXXXXXXXRGAVGSFRTEGNIISSTIEKMTVATNSSSELRSHEEGEPPYGGNCEERQRGEQRKSXXXXXXXXXSNHDCEAGVLATDNVEASADCGDDETPQRQPDGRTRSASCTDTLSGRNQV---STERSSRMRQSERRATGGGRGEEFWNDVDRCGSAANRNARCRVRSCCGV--------------LGRLQYRAIRRSCKRVIVDGRLVDWRHAGLGAAGFTAGLMCFAAQGKFPA--WYHMWHSAWHILAMGSTVPLLRARKWGTSGDYPDTPRG 3063
A +G+PRALSNFV EG + AV G G + RWLW GPGPPS+WYA++MSGREVGASM + L VNSS P +++S+ P W MGP S+ G GG V+ PV+ AS LSVAMR+GALPV+D NGT + T VL ++ ALSE E D P Y ++ + ++D P+WSTT+ WNLTHPPPL H GGG+ G G + TLF+ V E + GG G G RRA E + LW LGVAP V FRYCD++ CP+ R CR + G G +DYV SKCYC YG+GGEAC QR+VSY S++WQ LLV +NLAVVP VR AL LG G+APAVVL LNGAASA YHMCDLELTCAGG+LS+H+LQALDFFFSFFSVA LVLHLCPMPWD+PL RSP P +T+ ++G D ++ ++GD + R GG +S G++++ + + GSG RR G A DGG G+G+RLASLYVCLIPPLL V D PTAG NLA+VFA+CGGLLA +WGRLV RD+ + +A EE G SAA XXXXXX R G + V + SS EE E G EE++ G++ XXXXX + G++ D ++S+ + TD + N + S + + R+ GG RCG LGR+ +R +R S +RV L+DWR GLG AGF AGL CFA QG WYH+WH AWH+LAMGS VP+LRAR+WG + PD G
Sbjct: 122 ARIHEGQPRALSNFVRDEGGAAAAVAGLSESGXXXXXXXXXXXXXXXXXAKQAPRWLWRGPGPPSLWYALEMSGREVGASMEIRLSVNSSAPLMTTATAAAASLSAHGSPSAWHMGPRFSSPSVGDAGGGGGGAPVVQSVPVENASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEASDRPPPPYDDSSDAAGAADL---PWWSTTFTWNLTHPPPL--HPAAVGGGAGLGRGTAAT-----------TLFVVVSGETEAEASGRAKRYGGVGSTGGRDGKLRRRAAEREVEEGEGGGGDEVGVS---LWTLGVAPEVTFRYCDEDVCPIGRGECRAARG--GSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLV------RSPPPSLLASTIALPSNSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFAGRQEGPSDRVL---------LLGDRDQHYPRXXXXXXXXXXAHGRSQPRNRSHAGGVASSRKGSLASVSVDSP-------------------AAGSGAHRRGGTGGXXXXXXXXXXXXXXXXXXXXXNPAKAGEEADGG--GAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRE---RALAEEXXXXXXXXXXQG------HWRAESAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALSRSKRG------------VVNHGVVASPSSGWSFREEEEEGEGEQNEEKELGKEXXXXXXXXAE-------DEGLVGRDRAKSSSHTAGTRVLRGGGXXXXXXHDDTDASTINNDFIPCNPSSLSVLSRPRARSLGG----------SRCGGGVRXXXXXXXXXXXXXXXXXXXXXXXXSTRLGRI-FRLLR-SLRRVAFRRGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAESDPDEDGG 1173
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 4.360e-124 Identity = 416/1201 (34.64%), Postives = 513/1201 (42.71%), Query Frame = 1
Query: 1 ALFFQGRPRALSNFVHSEGKGSEAVGGAPRRGRRLQVGAAAVIGGQSGEDDE--GDRWLWEGPGPPSVWYAIDMSGREVGASMTVSLVVNSSFPTAGSSSSVGFPY-----GPYGWTMGPHQSN----EYYAGEGGDRDVLS-PVDEASVF-LSVAMRMGALPVLDANGTGLQDTWVLHSSHALSEANEVEDPDHYTTAALVSRSSDEQVH-----PFWSTTYRWNLTHPPPLAGHVWGAGGGSSGGWGLSXXXXXXXXXXXXXTLFLAVYAECVFTSD-----HDGSGDGGEGRRGCPRRAEEXXXXXXXXXXXXXXXXAADGLWALGVAPRVEFRYCDKETCPMARSVCRVSNGDGGGSNDYVKASKCYCTYGFGGEACAQRIVSYASIIWQTLLLVGTNLAVVPGVRTALSLGATVGSAPAVVLALNGAASAVYHMCDLELTCAGGILSYHALQALDFFFSFFSVAVLVLHLCPMPWDDPLTVAARNYRSPSPPGATLGAEDTDDPFFTRGALDDVPEKGELDYIVGGT---------------------------------------------------------------GGGDGSVVGDMYDNLGLDTMRTAVRTHNFYRRGSGASGDVGG---GSSRASGTISNRAAMLNNRGSGGAWTGDFRSHGVHHSQGSGQSRRDGANLSSDRASSNDVFEAKEETIGNITRQAAARVGDGGSRGSGTRLASLYVCLIPPLLTAVADSPTAGTNLALVFAVCGGLLAFSWGRLVARDMHDLEAKAAREEWVSSRSVAASAGAXXXXXXXXXXXXASAAIGDEEDGGAAEEIDGRENDGKHETRALMCXXXXXXXXXXRGAVGSFRTEGNIISSTIEKMTVATNSSSELRSHEEGEPPYGGNC--EERQRG-----EQRKSXXXXXXXXXSNHDCEAGVLATDNVEASADC---------GDDETPQRQPDGRTRSASCTDTLSGRNQVSTERSSRMRQSERRATGGGR--------GEEFWNDVDRCGSAANRNARCRVRSCCGVLGRLQYRAIRRSCKRVIVDGRLVDWRHAGLGAAGFTAGLMCFAAQGKFPA--WYHMWHSAWHILAMGSTVPLLRARKWGTSGDYPDTPRGSLHSTLSLHGNDKSPIGVGEHRHKTGRQRKGTSWARWGM-----FFGAGLGGRVETRA-SYEMVP 3240
A +G+PRALSNFV EG + WLW+GPGPPS+WYA++MSGREVGASM + L VNSS P ++ P W MGP S+ + G+GG V S PV++AS LSVAMR+GALPV+D NGT + T VL ++ ALSE E D P+WSTT+ WNLTHPPPL H GGG+ G G + TLF+ V E + ++G G G GR G RR + LW LGVAP V FRYCD++ CP+ R CR + G G +DYV SKCYC YG+GGEAC QR+VSY S++WQ LLV +NLAVVP VR AL LG G+APAVVL LNGAASA YHMCDLELTCAGG+LS+H+LQALDFFFSFFSVA LVLHLCPMPWD+PL + PS +T+ A G G + M R ++ RR SG G SR ++RGS + + D + GSG RR G V A DG G+G+RLASLYVCLIPPLL V D PTAG NLA+VFA+C GLLA +WGRLV RD+ + +A EE G E G+A XXXXXXXXXX G + + S + +H PP G EE ++G E ++ XXXXXXXX + G++ D ++S+ G T +++ + N S SR R R+ GG R G W D + S LGR+ + RS +RV V L+DWR GLG AGF AGL CFA QG WYH+WH AWH+LAMGS VP+LRAR+WG + PD G Q+ ++ A G+ G G G RVETR SYEMVP
Sbjct: 692 ARIHEGQPRALSNFVRDEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSWLWQGPGPPSLWYALEMSGREVGASMQIRLSVNSSAPLTTAAXXXXXXXXXAHGSPSAWHMGPRFSSRSGGDAGGGDGGAPVVQSVPVEDASSMNLSVAMRVGALPVVDPNGTAREGTVVLWTADALSEPGEANDRPXXXXXXXXXXXXXXXXXXXXDLPWWSTTFTWNLTHPPPL--HPAAVGGGAGLGRGTAAT-----------TLFVVVSGETEAEASGRAKRYEGVGPPG-GRDGMIRRRAAEREVEQGEGGGGDEVGVS--LWTLGVAPEVTFRYCDEDVCPVGRGECRAARG--GSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVLHLCPMPWDEPLVCSP----PPSSLASTIALPSNSAVVSANPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGAGGRAFAGRQEGPSDRVMLLGDRDQHYPRRSSGXXXXXXXXAHGRSRPRNRSHAGGVASSSRGSLASVSVDGPA------AGSGAHRRGGTGGXXXXXXXXWVXXXXXXXXXXXNPAKAGEEADGS--GAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCSGLLASNWGRLVRRDLRE---RALAEEXXXXXXXXXXXGHWRA-----------------ESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------RENALSGSKRGVVNHGVAAPPSSGWSFREEEEQGDSDQNEGKEHXXXXXXXXGEGQAGDQGLVERDKAKSSSHTAGTRVLRGGGXXXXXXXXXHDNTDTSTIINDFIPSNPSSLSVLSRPRA---RSLGGSRRGGXXXXXGSSGWTGADVSSNELXXXXXXXXXST--RLGRIF--PLLRSLRRVAVRWGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAESDPDEDGGLWGCGXXXXXXXXXXXXXXXXXXXXXXQQPLSARAAVGLRARWESLGPGFGARVETRTPSYEMVP 1821
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Match: A0A835Z3I3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I3_9STRA) HSP 1 Score: 114 bits (285), Expect = 5.350e-22 Identity = 68/155 (43.87%), Postives = 86/155 (55.48%), Query Frame = 1
Query: 910 ALGVAPRVEFRYCDKETCPMARSVCRVSNGDGGGSNDYVKASKCYCTYGFGGEACAQRIVSYASIIWQTLLLVGTNLAVVPGVRTALSLGATVGSA--PAVVLALNGAASAVYHMCDLELTCAGGILSYHALQALDFFFSFFSVAVLVLHLCPMP 1368
A+ V P V F C + CP ++ C VS G G V CYC YG+GGE CA R+VS +I Q LV TNLAVVP V A L SA P V + GA+SA+YH+CD+ + C GG L Y A+Q+LD FS+ S A + +L P
Sbjct: 537 AVMVQPMVSFTRCSSQACPQSKGSCSVSMGTAEG----VLVGTCYCKYGWGGEGCADRLVSTQTIALQAAALVLTNLAVVPSVVLAYRLRKVTDSAAGPGAVFGVAGASSALYHLCDIGIACIGG-LRYGAIQSLDILFSYMSSAAVATYLAYWP 686
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Match: A0A2P2JSC7_RHIMU (Uncharacterized protein LOC105134154 isoform X2 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JSC7_RHIMU) HSP 1 Score: 66.2 bits (160), Expect = 3.610e-7 Identity = 55/165 (33.33%), Postives = 79/165 (47.88%), Query Frame = 1
Query: 898 DGLWALGVA--------PRVE-FRYCDKETCPMARSV---CRVSNGDGGGSNDYVKASKCYCTYGFGGEACAQRIVSYASIIWQTLLLVGTNLAVVPGVRTALSLGATVGSAPAVVLALNGAASAVYHMCDLELTCAGGILSYHALQALDFFFSFFSVAVLVLHL 1356
+G WA G+ P + F E CP S C+V+ D G Y S C C GG C+ I+SY IWQ++ L+GTN+A + AL A A V+ +G +S +YH CD+ CA LS++ LQ +DF+ SF +V ++L
Sbjct: 504 EGTWAFGLRHLNTSNNIPHAQPFMSVSVERCPKRCSSYGECKVAL-DASGLTSY---SFCSCDRTHGGFDCSIEIISYHRHIWQSIALIGTNVAAILPAYWALRQKAF---AEWVLFTSSGISSGLYHACDVGTWCA---LSFNVLQFMDFWLSFMAVVSTFVYL 658
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Match: A0A8J5HP08_ZINOF (EGF-like domain-containing protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HP08_ZINOF) HSP 1 Score: 58.5 bits (140), Expect = 8.580e-5 Identity = 52/177 (29.38%), Postives = 76/177 (42.94%), Query Frame = 1
Query: 892 AADGLWALGVAPRVEFRYCDKET-------CPMA---RSVCRVSNGDGGGSNDYVKASKCYCTYGFGGEACAQRIVSYASI------------IWQTLLLVGTNLAVVPGVRTALSLGATVGSAPAVVLALNGAASAVYHMCDLELTCAGGILSYHALQALDFFFSFFSVAVLVLHL 1356
A++G W +G+ D+ T CP CR S + G S C C GG C+ +VS+ I IWQT+ LV +N A + AL + A V+ +G +S +YH CD C +LS+HALQ LDF+ SF +V +++
Sbjct: 541 ASEGTWCIGIMHPPRNDNSDRTTMSIWLEGCPSHCNHHGACRNSIDETG----LTFYSYCECDRDHGGFDCSHELVSHQGIEWNTVTASLTWHIWQTIFLVASNGAAILPAYWALR-QKLMAFAEWVIYTASGISSGLYHACDRGTWC---VLSFHALQFLDFWLSFMAVVSTFVYM 709 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13423.2139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13423.2139.1 >prot_H-paniculata_contig13423.2139.1 ID=prot_H-paniculata_contig13423.2139.1|Name=mRNA_H-paniculata_contig13423.2139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1011bp MSGREVGASMTVSLVVNSSFPTAGSSSSVGFPYGPYGWTMGPHQSNEYYAback to top mRNA from alignment at H-paniculata_contig13423:272..6219+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13423.2139.1 ID=mRNA_H-paniculata_contig13423.2139.1|Name=mRNA_H-paniculata_contig13423.2139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5948bp|location=Sequence derived from alignment at H-paniculata_contig13423:272..6219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13423:272..6219+ >mRNA_H-paniculata_contig13423.2139.1 ID=mRNA_H-paniculata_contig13423.2139.1|Name=mRNA_H-paniculata_contig13423.2139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6066bp|location=Sequence derived from alignment at H-paniculata_contig13423:272..6219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |