mRNA_H-paniculata_contig1342.2138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1342.2138.1
Unique NamemRNA_H-paniculata_contig1342.2138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1342.2138.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 7.100e-67
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 1 
Query:    1 LGRLQPTQVREKPRPAVDFAKGGSDFRCPRTFSCLGRQALSREVYRNAGTPAFARQDRWYVPGDKFTAHGGTPISALGNQPISTRKSAGRAHFGTSTRSSAMKMYALWSVAQQR 342
            +GRLQPT VR+KPRP V F KGGSDFRCPRTFSCLG+QALSR+VYR+AG P F RQDRWYVPGDKF  HGGTPIS+LGNQP STR SAGRAHFGTSTRSSAMKMYALWSV QQR
Sbjct:    1 MGRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 114
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BLAST of mRNA_H-paniculata_contig1342.2138.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 8.670e-65
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:    1 LGRLQPTQVREKPRPAVDFAKGGSDFRCPRTFSCLGRQALSREVYRNAGTPAFARQDRWYVPGDKFTAHGGTPISALGNQPISTRKSAGRAHFGTSTRSSAMKMYALWSVAQQR 342
            +GR QPT VR+KPRP V F KGGSDFRCPRTFSCLG+QALSR+VYR+AG P F RQDRW+VPGDKF AHGGTPIS+LGNQP STR SAGRAHFGTSTRSSA KMYALWSV QQR
Sbjct:   30 MGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQQR 143
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BLAST of mRNA_H-paniculata_contig1342.2138.1 vs. uniprot
Match: A0A482RU74_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU74_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 5.230e-7
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 LGRLQPTQVREKPRPAVDFAKGGSDFRCPRTFSCLGRQALSREVYRN 141
            LG+LQP   R    P V++AKGGSDFRCP   S  GRQ +S E +RN
Sbjct:   17 LGKLQPVTSRVPANPPVNYAKGGSDFRCPLNTSSFGRQTVSGE-HRN 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1342.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1S5_ECTSI7.100e-6784.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L3_9PHAE8.670e-6582.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RU74_9ARCH5.230e-755.32Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1342contigH-paniculata_contig1342:17487..18878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004330.1
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.2313185-CDS-H-paniculata_contig1342:17486..176881622929064.2313185-CDS-H-paniculata_contig1342:17486..17688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1342 17487..17688 +
1691480717.671865-CDS-H-paniculata_contig1342:17486..176881691480717.671865-CDS-H-paniculata_contig1342:17486..17688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1342 17487..17688 +
1622929064.2456322-CDS-H-paniculata_contig1342:18735..188781622929064.2456322-CDS-H-paniculata_contig1342:18735..18878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1342 18736..18878 +
1691480717.683681-CDS-H-paniculata_contig1342:18735..188781691480717.683681-CDS-H-paniculata_contig1342:18735..18878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1342 18736..18878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1342.2138.1prot_H-paniculata_contig1342.2138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1342 17487..18878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1342.2138.1

>prot_H-paniculata_contig1342.2138.1 ID=prot_H-paniculata_contig1342.2138.1|Name=mRNA_H-paniculata_contig1342.2138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
LGRLQPTQVREKPRPAVDFAKGGSDFRCPRTFSCLGRQALSREVYRNAGT
PAFARQDRWYVPGDKFTAHGGTPISALGNQPISTRKSAGRAHFGTSTRSS
AMKMYALWSVAQQR*
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mRNA from alignment at H-paniculata_contig1342:17487..18878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1342.2138.1 ID=mRNA_H-paniculata_contig1342.2138.1|Name=mRNA_H-paniculata_contig1342.2138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig1342:17487..18878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGGTCGCCTGCAGCCAACGCAAGTGCGCGAAAAACCCCGACCCGCAGT
CGACTTTGCCAAAGGTGGAAGTGACTTCAGGTGTCCCAGGACATTCAGCT
GTTTAGGCCGGCAGGCTTTGTCTAGAGAAGTGTACCGCAACGCAGGAACA
CCCGCGTTCGCTAGGCAGGATCGGTGGTACGTTCCTGGCGATAAGTTCAC
AGGTGCGAGCGAGACCGACGACCGGAGGAATTGAAAAATAGAAAAGACCT
CTTTGTAGATTAGGCCTACTAAAAAAATACCCTCCATGTCTCGCTGTACA
GTAGGGATCTGATAAAAAGAAACTCTTCTTTCGGGTGATCCTCAAAACGT
TATTTTGGCGAGAATCACGAGCAGTACCGTTTCTCACTTTTATATAGGAA
TTAGTATAATGCCACAATTTGAGCCGCATTTCTTGAACCAACTTCCATGG
TTTAACAAAAATTGAGTCGCATATTCTTATTGGATGATTTCTTGCCAGAG
GGACCGTACTGTATGCGCAAATACAATAGGATGCAGTTGGCGATTTCGCG
TTCGTGTTTTCTAAGGGTACGAATTGAAGATATCGATAATTGCTTACGAC
TAGCATGATATCTGTGTTCGGTTTAATTTGGCTGATTCCTAACCATTAGC
GTGCCGTTGGACAAAAAGCAACAAAAACTGAGAGTACAGCGTCCTGCGGG
CCAATATTATAGTTGTACACCATACAGTAGAGGTGGTTGCTCTGCACGGT
TCTGATGGAAGGAACAGATATGATAACAGTCTAATATACGCTTGCTTGCT
TGTGCAGCACCATTTCTGTACGCACATGTTGTTTGTTGCAAACAACAAAC
AATGAAAAGATGGAATTAGAGAGGTTGGCAAGTGCCAGCATCGTCCAAGA
GATTCAGAGTGTTAGCAGCAGCAAACACGTATGCGACATGCCTTCGTATA
TGACAATAACCCAAACACACAGCAGCGGACACCGGCCCCAAGTCGGGACA
AGGAGAACATCAGTACACGTATGATAGTATTCACATCCTCAAGTCCGCCA
CTCAGGTGGTTAGGGGCCAGGCTTATTGCATAACAGGTTATTCCGACCGT
CGATTTTCACTCGTCCGAAATTGTCCAATTTGGAAGAGACTCGTACATTT
CGAGGGGGTGAAATAAACCAATATTTCGACCACCTTAGAAGCTCAGCCCG
TGGCACATCATTCGTTTTGCCCATACCGCGTGTCATCCTCAAATTACAGC
ACACGGGGGAACACCGATATCTGCTCTCGGAAATCAACCAATCTCCACGC
GCAAGTCGGCAGGGCGAGCGCACTTCGGCACGTCGACCCGCAGTAGTGCA
ATGAAGATGTATGCCTTGTGGTCGGTCGCCCAGCAACGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1342:17487..18878+

>mRNA_H-paniculata_contig1342.2138.1 ID=mRNA_H-paniculata_contig1342.2138.1|Name=mRNA_H-paniculata_contig1342.2138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1342:17487..18878+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGGTCGCCTGCAGCCAACGCAAGTGCGCGAAAAACCCCGACCCGCAGT
CGACTTTGCCAAAGGTGGAAGTGACTTCAGGTGTCCCAGGACATTCAGCT
GTTTAGGCCGGCAGGCTTTGTCTAGAGAAGTGTACCGCAACGCAGGAACA
CCCGCGTTCGCTAGGCAGGATCGGTGGTACGTTCCTGGCGATAAGTTCAC
AGCTAGGTCGCCTGCAGCCAACGCAAGTGCGCGAAAAACCCCGACCCGCA
GTCGACTTTGCCAAAGGTGGAAGTGACTTCAGGTGTCCCAGGACATTCAG
CTGTTTAGGCCGGCAGGCTTTGTCTAGAGAAGTGTACCGCAACGCAGGAA
CACCCGCGTTCGCTAGGCAGGATCGGTGGTACGTTCCTGGCGATAAGTTC
ACAGCACACGGGGGAACACCGATATCTGCTCTCGGAAATCAACCAATCTC
CACGCGCAAGTCGGCAGGGCGAGCGCACTTCGGCACGTCGACCCGCAGTA
GTGCAATGAAGATGTATGCCTTGTGGTCGGTCGCCCAGCAACGATAACAC
ACGGGGGAACACCGATATCTGCTCTCGGAAATCAACCAATCTCCACGCGC
AAGTCGGCAGGGCGAGCGCACTTCGGCACGTCGACCCGCAGTAGTGCAAT
GAAGATGTATGCCTTGTGGTCGGTCGCCCAGCAACGATAA
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