mRNA_H-paniculata_contig13418.2135.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13418.2135.1
Unique NamemRNA_H-paniculata_contig13418.2135.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13418.2135.1 vs. uniprot
Match: D8LHE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE5_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 5.110e-107
Identity = 161/205 (78.54%), Postives = 183/205 (89.27%), Query Frame = 1 
Query:    1 QVVEEPSVERRGKVIDAATGLEWVQPDSGFISITFKVSRELPSERDVLSPEASWIAMMLIMGQESDSDRVNILRLIMKDTYVTTDSGQKLIDGLSSMGIYPRDVVEMVWNRVVDVGNLYDFMSRNVEHAARRDVVNILTHERFKFNWNNPTGHYRLEMEKKAHREIMMLLSMVHAIEIAQGKREGRGDTSQAQNWSNFRNARMDK 615
            QVVEE    +R  V+D ATG  W+ PDSG++S+ FKVSRELPS +DVL+PEA+W AMMLIMGQESDSDR+NILRL+++DTYVTT+SGQKLID LS MGIYPRDVVEMVW RVVD  NLY+F+S NVEH+ARRDVVNILTHERFKFNW+NPTGHYRLEM+KK+HREIMMLLSMVH+ EI QGK+EGRGDTSQ QNWSNFRNARMDK
Sbjct:   72 QVVEEAKGIKRASVVDTATGKPWIPPDSGWLSVKFKVSRELPSIKDVLNPEAAWTAMMLIMGQESDSDRMNILRLVLRDTYVTTESGQKLIDQLSHMGIYPRDVVEMVWTRVVDANNLYEFLSHNVEHSARRDVVNILTHERFKFNWDNPTGHYRLEMQKKSHREIMMLLSMVHSREILQGKKEGRGDTSQGQNWSNFRNARMDK 276
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BLAST of mRNA_H-paniculata_contig13418.2135.1 vs. uniprot
Match: A0A836CM61_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM61_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.570e-34
Identity = 83/229 (36.24%), Postives = 116/229 (50.66%), Query Frame = 1 
Query:   40 VIDAATGLEWVQPDSGFISITFKVSRELPSERDVLSPEASWIAMMLIMGQESDSDRVNILRLIMKDTYVTTDSGQK--------------------------------------LIDGLSSMGIYPRDVVEMVWNRVVDVGNLYDFMSRNVEHAARRDVVNILTHERFKFNWNNPTGHYRLEMEKKAHREIMMLLSMVHAIEIAQGKREGRGDTSQAQNWSNFRNARMD 612
            V+DAATG EW+ P SG + +T +V+  LP   D L   A  +A  L+ G     +R  +L L+  D  VTT   Q+                                      ++  LS  G+ P + V ++WN +VD  N +DFM   VE A RRD+ N++THE FKFNW NPTGHYRL++  K HR I+  +  +  +E+ +G      DTSQ +N SNFRNA +D
Sbjct:  485 VVDAATGREWMPPRSGTLRVTLRVTPALPRRGDALCTRALGVAERLMAGAAPGHERDALLALLAADMLVTTAQAQEVCSTXXXXEVGRYVXXXXXXXXXXXXXXXXXXXXXXXXMLHILSGAGVPPLEGVRLLWNCIVDPENKFDFMCACVEPARRRDLANLITHEVFKFNWKNPTGHYRLQLSNKYHRAILNTVVAIQVLEMGKGAPPDAPDTSQHRNRSNFRNATLD 713
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BLAST of mRNA_H-paniculata_contig13418.2135.1 vs. uniprot
Match: A0A7S3XXN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXN7_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 5.170e-16
Identity = 53/141 (37.59%), Postives = 74/141 (52.48%), Query Frame = 1 
Query:  217 LRLIMKDTYVTTDSGQKLIDGLSSMGIYPR--DVVEMVWNRVVDVGNLYDFMSRNVE-------HAARRDVVNILTHERFKFNWNNPTGHYRLEMEKKAHREIMMLLSMVHAIEIAQGKREGRGDTSQAQNWSNFRNARMD 612
            L L+ +D  VTT+   +++        + R  DVV   W RVVDV NL  F+   +E       H  +R +   ++ ERF F   NP+GHYRL +  + HRE + LL  ++  E    +  GRGDTSQ  NW+NFRN   D
Sbjct:    5 LGLVAQDLAVTTEQLGRVVREFKRGHEHLRAIDVVTSFWTRVVDVENLMPFLDGVLESGVDGTRHEQKRRIAQNVSFERFGFTPGNPSGHYRLVLRNRPHRECLQLLLDINHREAQASQASGRGDTSQKGNWANFRNEACD 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13418.2135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHE5_ECTSI5.110e-10778.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM61_9STRA1.570e-3436.24Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S3XXN7_HETAK5.170e-1637.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13418contigH-paniculata_contig13418:1371..5275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size873
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.7452848-UTR-H-paniculata_contig13418:1370..15051622929063.7452848-UTR-H-paniculata_contig13418:1370..1505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 1371..1505 +
1691480717.5183735-UTR-H-paniculata_contig13418:1370..15051691480717.5183735-UTR-H-paniculata_contig13418:1370..1505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 1371..1505 +
1622929063.7643037-UTR-H-paniculata_contig13418:2542..25751622929063.7643037-UTR-H-paniculata_contig13418:2542..2575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 2543..2575 +
1691480717.5309541-UTR-H-paniculata_contig13418:2542..25751691480717.5309541-UTR-H-paniculata_contig13418:2542..2575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 2543..2575 +
1622929063.8105733-UTR-H-paniculata_contig13418:4627..47501622929063.8105733-UTR-H-paniculata_contig13418:4627..4750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 4628..4750 +
1691480717.5687656-UTR-H-paniculata_contig13418:4627..47501691480717.5687656-UTR-H-paniculata_contig13418:4627..4750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 4628..4750 +
1622929063.8205798-UTR-H-paniculata_contig13418:5149..52751622929063.8205798-UTR-H-paniculata_contig13418:5149..5275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 5150..5275 +
1691480717.5767908-UTR-H-paniculata_contig13418:5149..52751691480717.5767908-UTR-H-paniculata_contig13418:5149..5275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13418 5150..5275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.776337-CDS-H-paniculata_contig13418:2575..27271622929063.776337-CDS-H-paniculata_contig13418:2575..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 2576..2727 +
1691480717.5404341-CDS-H-paniculata_contig13418:2575..27271691480717.5404341-CDS-H-paniculata_contig13418:2575..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 2576..2727 +
1622929063.78655-CDS-H-paniculata_contig13418:2976..31391622929063.78655-CDS-H-paniculata_contig13418:2976..3139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 2977..3139 +
1691480717.5501359-CDS-H-paniculata_contig13418:2976..31391691480717.5501359-CDS-H-paniculata_contig13418:2976..3139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 2977..3139 +
1622929063.800156-CDS-H-paniculata_contig13418:3791..39321622929063.800156-CDS-H-paniculata_contig13418:3791..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 3792..3932 +
1691480717.559708-CDS-H-paniculata_contig13418:3791..39321691480717.559708-CDS-H-paniculata_contig13418:3791..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13418 3792..3932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13418.2135.1prot_H-paniculata_contig13418.2135.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13418 2576..3932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13418.2135.1

>prot_H-paniculata_contig13418.2135.1 ID=prot_H-paniculata_contig13418.2135.1|Name=mRNA_H-paniculata_contig13418.2135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MMLIMGQESDSDRVNILRLIMKDTYVTTDSGQKLIDGLSSMGIYPRDVVE
MVWNRVVDVGNLYDFMSRNVEHAARRDVVNILTHERFKFNWNNPTGHYRL
EMEKKAHREIMMLLSMVHAIEIAQGKREGRGDTSQAQNWSNFRNARMDKA
S*
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mRNA from alignment at H-paniculata_contig13418:1371..5275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13418.2135.1 ID=mRNA_H-paniculata_contig13418.2135.1|Name=mRNA_H-paniculata_contig13418.2135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3905bp|location=Sequence derived from alignment at H-paniculata_contig13418:1371..5275+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTCGAGGAGCCTAGCGTCGAGAGGAGAGGGAAGGTAATTGACGC
GGCGACGGGACTCGAGTGGGTACAGCCCGACTCGGGGTTCATCTCGATCA
CGTTCAAGGTCTCCAGAGAGCTGCCCTCCGAGAGGGTAAGATAGGCGGGG
TAACGGCGGGCAAACTGTCGATTTGCTGCGCTACTACCCCCCCCACTACC
ACAAGAAAGTCACAGGTTAGAAAAAGACAAATATGCAAACACAGATGAAG
AAGCATGAAAGCACACAAAAAAATAGGTACGTGAAACATAAGAGCCATAC
TTTTAGACTCCAACCTTAATGTATGAACTACAGTACCCTAAAGTCCTCTT
TTTTGGACTTAGAATACCGTGTTACTTCAACGTTATCACAGATTTCGTCA
TGACCTGAGTAAATATTTAAGCGCTGAGTCTACCGCTGTACGACATGTCG
TCACAATGATGGTGCCACCAACCCTCCAAGAAAACATATTTGGCTGTGGA
ATGTCGCTCATGATAGGCCTTCTTTCCCCGATGGATCAATCATGACCCAT
CCCTGAGTGGATAAAGATCTCTCGGATAACAGCATATTGGTGAAATGGGA
ACCCAACTTTGAGATGGGGACCCTGGGTTATATTGGAAATAGGCGTTGCG
GTCAGCTTTAGCAGCAGCACGCAGCACTGTGTCACTGTTTCAACTACCGG
GGTGAGTGGCTCTTGGAGAGGGAGCTAAACAGGGCTTGTACGTGAAGGGT
GTGCTTGCATTCTTGCAACCGGAATTAACAGCATATTGGTGAAATGGGGA
CCCATCTCAAACTTGGTCGAGTTATGTTCAAGAGATGTTAGTGCGATATT
CCCACGCACCTCGCGCCCTGTTTCCCACGCACCATTAGAAATATGCCAGA
ATTTCTGGTATTTTGTCTTTTGAACGATCTACTCGTACGGTCCAGGCCAG
GAATCAGAGGTAGTCCACGCGCAGTTGTCCCTGTTCGTAACTCCCCAGCA
ATGCGCCGGATCTCCACTCGGCGGTGTACAAACTGAAAAACAGAGAATAT
CACCAGATAGTCCTTCGATGCCCATGATAGTAACTGCTCTGTGCAGGAAC
GCTATACCAATAAACGAACACCCCCCCCCTTCTCGCTTCCCTGGCCTCCG
TGCTTTGGAATCTGTTCCTTAGGACGTATTGTCGCCCGAAGCGTCGTGGA
TAGCGATGATGCTAATCATGGGTCAAGAGTCGGACTCCGACAGAGTTAAT
ATCCTGCGGCTTATCATGAAAGACACATATGTCACCACCGACTCGGGTCA
AAAACTGATTGACGGGCTGTCGAGTATGGGTATCTACCCGAGAGACGTCG
TCGAGATGTGAGAACAGCACACTGTGAGGTACCACAGGGTACACTCAATA
TAGGTCCCTTGTTGATCGGATGTATCTTGGTCATCATCCGGTAGTTATGC
TAAATATCATTATCCGGCAACTACGCTATAACCCTAGCTGCCGATCTAGC
ACGAACAGTAATATGTCATACACACTACTGTTATACGGATCATTCATCTT
ACCGCCGCATCTTATGTGTCCACAAGAAGGAGACTATCCGGCATCTTGTC
TGACAGGGTATGGAACCGTGTCGTCGACGTCGGAAATCTTTACGACTTCA
TGTCGCGTAACGTGGAGCATGCGGCGCGGCGGGATGTGGTGAATATCCTC
ACGCACGAGCGGTTCAAGTTCAACTGGAACAATCCCACCGGGCACTACCG
CTTGGAGATGGAGAAGAAGGTAACAATAACATTAGCCCATCACCTACGTG
CTGCGCATAGCTGTTAACATCACCACGACTGGAACGGCACATGCGCCGTT
ACATTATTCCTGTTTTTCAGAACTTCGACGATGACTGCTATATCAATTTG
CGCGGGGTGTGCTGTACGACGGTACGTGAAAGGCATGCCCGCGACAGGAG
AACTAGCACGAGAAGTGATATTCTTGCATTGTAAATCCGGTACTTCTTGC
GTGGCTTTCGTTGCTTATATGATTGGTACCGCCCAGCTCAAACTCTATCG
ATACCGCAGAAGAAATCGAGGTGATAAAACTGACTGAAACGCTCAACAAA
CCCTATATACAACAAATATCATTTAGGCTATGTTGGGATGTTTCTTCCGT
TGTACTCTCCTTGCACACACGTTGCCTGGCTTCGTCTCAAGTTCTTTTCT
CCTCTGGCCGACAACTTCGTTGACGATCTAATAGGGCGCCGCGTGATCGA
CCACTGCCGAGAACAGGCACACCTGTGCCATTGCCTACGCTTGCGGCGGA
GGGATATCCTCCTTTCGCGAAGAAGAAACGTTTCAGTTATTGCATCCCGA
TAAAACTTCACGATGAAAAAGCTTGTCCGATTTTGCCCGCCTGACTTCCC
CGGTGGATTGATTCCATTCAGGCTCACCGAGAAATCATGATGCTACTATC
CATGGTCCACGCGATCGAGATAGCGCAAGGCAAGCGAGAAGGCAGAGGAG
ATACATCCCAGGCCCAAAACTGGTCTAACTTCCGAAATGCCCGCATGGAC
AAGGCGAGCTAGGTCTTCCCCATCGTAGAAGCCTAACGCTGTCTTCAACA
TTGAAGCTTCCGATCACTACACCTCCTTCAGACGTTATCATGGTGCCACC
TTTCACGTTGAGGGATGGTAATGAATGCCATCTCAAACGTCGAGAAGCCC
AAAGAACGGTGTGATCGAGGCTCACTTTTTTGCGTGACCCCTTCAACGTT
GAATGAAGCCCGCAAGTTGACGGTCGCCTTCCGAAGAGTAATGCTGTCTT
CAATTTGCCTGATGGAAGACCACATTTAATTAGCCTCAAGATTCAAACAA
GCCCAGCAATGTTCAGATACCTACTTAGTGGTCATGCGGCTGAAGTGTGA
AGGGCATATGGAGCCGGAATATAAGCTGCTGTTTGCTCGCAAGAATGCCA
GTGCACCGCCGGCGCTGTTCATGTAGTCAGCTTGGCGAAAGCACGTGGCA
GAGTCAATCGCGGCTTCCCACGCGAACTGTTGGGCCTGTACTGAAGAACT
TCTTACGCTTGCGGAACTCAAACGTTTCGAACCCCTTCCTTATCTATAAT
ACCACGTTTAGTCCTTCGATGAAGGTCTTCTTCAGATAACGATTTTCTAG
ACTTTTTTGTCATCACTGACGATGAACGATGTTCAAAGTAACTCTGTCGC
AGCTCTTAATCTATCCGTGGACGCCTCAATAGCACTTCTACACGGAAATC
GCACCAGGTCCCTATTGAGCTGACGGAGGCTTCCACGAGCAATCTTTCGA
CGTCTGGAGTACTGGAGTTCGACTACGTTTCCACTGCTAAAGCGCCGCCG
GACGCCAAGCCCGCCACAGACGCTCAGGTAGTCAAGGTAGCATATGGCAT
AGTGTATACACACGCCAGAGACTATTGCATCTATGTGGCCGCTTATCTCA
ACATCAACGCATCGTCAAACTAGTATTGAAGGTAGCAATACGAGAAGGAC
TGCAATGGCACCTTCTCGTATTAGCTGTTACCAGTACACCGTTTTGTACT
GCCGAAACGATGTCTGTCTGCTCCTGGGAATCGTGGTCCACGCATGCGTT
CTCTGTCCACCTGCTGATAGGGCAGGCAGTTCTAAATCACGCGTTCTTGT
GGAGCTATTGGGATGCTGTTCTCAACAAGGTCGTGCGATTCCTCCCTCGA
ATTATTCACGATAGACCTTGACGGGGAAACTGTGAACTAAACAACACTCT
CGTGAACCGCTGCATGCGACAACGCCCAGCTAAATGCACTGCAGGGATCG
CTGCAGCTGGTACAGAGAAGGAACTTCGAGGAGAAACCAAACTACATGCT
AATCCTCCTTCAGCTACAGCAGGCGGCCGCACGATACTATTTCACAACAC
AGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13418:1371..5275+

>mRNA_H-paniculata_contig13418.2135.1 ID=mRNA_H-paniculata_contig13418.2135.1|Name=mRNA_H-paniculata_contig13418.2135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig13418:1371..5275+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTAATCATGGGTCAAGAGTCGGACTCCGACAGAGTTAATATCCT
GCGGCTTATCATGAAAGACACATATGTCACCACCGACTCGGGTCAAAAAC
TGATTGACGGGCTGTCGAGTATGGGTATCTACCCGAGAGACGTCGTCGAG
ATATGATGCTAATCATGGGTCAAGAGTCGGACTCCGACAGAGTTAATATC
CTGCGGCTTATCATGAAAGACACATATGTCACCACCGACTCGGGTCAAAA
ACTGATTGACGGGCTGTCGAGTATGGGTATCTACCCGAGAGACGTCGTCG
AGATGGTATGGAACCGTGTCGTCGACGTCGGAAATCTTTACGACTTCATG
TCGCGTAACGTGGAGCATGCGGCGCGGCGGGATGTGGTGAATATCCTCAC
GCACGAGCGGTTCAAGTTCAACTGGAACAATCCCACCGGGCACTACCGCT
TGGAGATGGAGAAGAAGGGTATGGAACCGTGTCGTCGACGTCGGAAATCT
TTACGACTTCATGTCGCGTAACGTGGAGCATGCGGCGCGGCGGGATGTGG
TGAATATCCTCACGCACGAGCGGTTCAAGTTCAACTGGAACAATCCCACC
GGGCACTACCGCTTGGAGATGGAGAAGAAGGCTCACCGAGAAATCATGAT
GCTACTATCCATGGTCCACGCGATCGAGATAGCGCAAGGCAAGCGAGAAG
GCAGAGGAGATACATCCCAGGCCCAAAACTGGTCTAACTTCCGAAATGCC
CGCATGGACAAGGCGAGCTAGGCTCACCGAGAAATCATGATGCTACTATC
CATGGTCCACGCGATCGAGATAGCGCAAGGCAAGCGAGAAGGCAGAGGAG
ATACATCCCAGGCCCAAAACTGGTCTAACTTCCGAAATGCCCGCATGGAC
AAGGCGAGCTAG
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