mRNA_H-paniculata_contig13410.2130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13410.2130.1
Unique NamemRNA_H-paniculata_contig13410.2130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI)

HSP 1 Score: 455 bits (1170), Expect = 8.460e-156
Identity = 225/230 (97.83%), Postives = 230/230 (100.00%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 925
            DDDKEWVP+TKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLG+KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDE+GHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGR+NG+PHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF
Sbjct:   52 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 281
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA)

HSP 1 Score: 379 bits (974), Expect = 1.430e-126
Identity = 189/219 (86.30%), Postives = 201/219 (91.78%), Query Frame = 2 
Query:  245 KEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 901
            KEWVPVTKLGRLVKE KIKSLE+IY FSM I+E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD  GHVGLGVKCAKEVATAIRGAI IAKMSVVP+RRGYWGR+NG PHTVP KVTGKCGSVRVRLIPAPRGTGLVA+PV +KLL MAGVEDCYT S GHTRT+GNFVKAV+FAL KTYGYLSPELW PT F+++PYQEHTDFLAK+
Sbjct:   31 KEWVPVTKLGRLVKEEKIKSLEEIYSFSMRIQECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEVATAIRGAITIAKMSVVPIRRGYWGRRNGQPHTVPCKVTGKCGSVRVRLIPAPRGTGLVASPVSRKLLGMAGVEDCYTCSNGHTRTMGNFVKAVFFALGKTYGYLSPELWAPTQFKASPYQEHTDFLAKS 249
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A7S4UVA6_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4UVA6_9DINO)

HSP 1 Score: 365 bits (938), Expect = 9.070e-121
Identity = 183/222 (82.43%), Postives = 199/222 (89.64%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 901
            D DKEWVPVTKLGRLVK+ KIKSLE+IYL+S+ IKEYQIVD+FL   LKDEVMKIMPVQK SAAGQ TRFKAFVAVGD  GHVGLGVKCA EVATAIRGAII+AK+SVVP+RRGYWG+K GLPHTV NKVTGKCGSV VRLIPAPRGTGLVA+PVPKKLL MAGVED Y+ S GHTRT+GNF+KAVY AL+KTYGYLSPELWKPTVF   PYQE+TDFL+K 
Sbjct:   41 DGDKEWVPVTKLGRLVKDGKIKSLEEIYLYSLPIKEYQIVDYFLPN-LKDEVMKIMPVQKQSAAGQRTRFKAFVAVGDYNGHVGLGVKCASEVATAIRGAIILAKISVVPIRRGYWGKKVGLPHTVANKVTGKCGSVSVRLIPAPRGTGLVASPVPKKLLGMAGVEDVYSQSTGHTRTMGNFIKAVYTALSKTYGYLSPELWKPTVFTPTPYQEYTDFLSKK 261
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA)

HSP 1 Score: 365 bits (937), Expect = 2.760e-120
Identity = 180/233 (77.25%), Postives = 203/233 (87.12%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFL----AKNPAPKAAE 922
            DDDKEWVP+TKLGRLVKE KIKSLE+I+LFSM IKEYQIVD FLGTKLKDEVM IMPVQK + AGQ TRFKAFVAVGD +GHVGLGVKCAKEVATAIRGAII+AKM+++P+RRG+WG++ G PHTV  K+TGKCGSVRVRLIPAPRGTGLVAAP  KK+L+MAG++DCYTSSRGHTRT+GNF+KA +FALAK+YGYLSPELW  T F   P+QEHTDFL     K  APK  E
Sbjct:   63 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRRGFWGKQVGQPHTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMGNFIKACFFALAKSYGYLSPELWPETQFLPPPFQEHTDFLKNAGGKEAAPKPFE 295
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A3M6TJ54_POCDA (40S ribosomal protein S2 n=3 Tax=Astrocoeniina TaxID=123757 RepID=A0A3M6TJ54_POCDA)

HSP 1 Score: 356 bits (914), Expect = 3.650e-117
Identity = 172/227 (75.77%), Postives = 201/227 (88.55%), Query Frame = 2 
Query:  239 DDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAA 919
            +DKEWVPVTKLGRLVK+ KIK+LE IYLFS+ IKE++I+DFFLG+ LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG K G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG+EDCYTS+RG T TLGNF KA + A++KT+ YL+P++WK TVF  APYQE TDFLAKN + + A
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKTLEQIYLFSLPIKEHEIIDFFLGSHLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSSGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGQPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGQTATLGNFAKATFAAISKTFCYLTPDMWKDTVFTKAPYQEFTDFLAKNHSGQRA 267
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A484DZT2_BRELC (S5 DRBM domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZT2_BRELC)

HSP 1 Score: 355 bits (911), Expect = 6.140e-117
Identity = 174/226 (76.99%), Postives = 195/226 (86.28%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 913
            ++ KEWVPVTKLGRLVKE KI SLE+IYLFS+ IKE +IV++FL   LKDEVMKIMPVQK + AGQ TRFKAFVAVGD  GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F  +PYQE+TDFLAK    K
Sbjct:   36 EESKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNYFLEASLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHTFGQSPYQEYTDFLAKTAIKK 261
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: K3X0V8_GLOUD (S5 DRBM domain-containing protein n=5 Tax=Oomycota TaxID=4762 RepID=K3X0V8_GLOUD)

HSP 1 Score: 353 bits (906), Expect = 3.250e-116
Identity = 173/226 (76.55%), Postives = 195/226 (86.28%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 913
            DD+KEWVPVTKLGRLVKE KI SLE+IYLFS+ IKE +IV+ FL  +LKDEVMKIMPVQK + AGQ TRFKAFVAVGD  GH+GLGVKCAKEVAT+IRGAII+AK+++VPVRRGYWG   G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAP PKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F ++PYQEHTDFLAK    K
Sbjct:   34 DDNKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNHFLEAQLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDHNGHIGLGVKCAKEVATSIRGAIILAKIALVPVRRGYWGLMIGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPAPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHSFAASPYQEHTDFLAKTTIKK 259
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: RS2_URECA (40S ribosomal protein S2 n=1 Tax=Urechis caupo TaxID=6431 RepID=RS2_URECA)

HSP 1 Score: 352 bits (903), Expect = 1.780e-115
Identity = 170/222 (76.58%), Postives = 197/222 (88.74%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 901
            D DKEWVPVTKLGRLVK+ KIK+LE+IYLFS+ IKE++I+DFFLG  LKDEV+KIMPVQK + AGQ TRFKAFVA+GD  GHVGLGVKC+KEVATAIRGAII+AK+SVVPVRRGYWG K G PHTVP KVTGKCGSV VRLIPAPRGTG+V+APVPKKLL+MAG++DCYTS+RG T TLGNF KA Y A+A TY YL+P+LW+ TVF  +PYQE+TD+LAK+
Sbjct:   41 DGDKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAKH 262
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A0P5E9E5_9CRUS (40S ribosomal protein S2 (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5E9E5_9CRUS)

HSP 1 Score: 352 bits (902), Expect = 2.120e-115
Identity = 168/225 (74.67%), Postives = 197/225 (87.56%), Query Frame = 2 
Query:  236 DDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAP 910
            + +KEWVPVTKLGRLV++ KI++LE+IYLFS+ IKE++I+DFFLGT LKDEV+KIMPVQK + AGQ TRFKAFVA+GD  GH+GLGVKC+KEVATAIRGAII+AK+SVVPVRRGYWG K G PHTVP KVTGKCGSV VRLIP PRGTG+V+APVPKKLL MAG+EDCYT++RG T TLGNF KA Y A+AKTY YL+P+LW  TVF ++PYQEH+DFL KN  P
Sbjct:   38 EGEKEWVPVTKLGRLVRDGKIRTLEEIYLFSLPIKEFEIIDFFLGTALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHIGLGVKCSKEVATAIRGAIIMAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPGPRGTGIVSAPVPKKLLQMAGIEDCYTAARGSTGTLGNFAKATYAAIAKTYAYLTPDLWTETVFNNSPYQEHSDFLMKNHRP 262
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BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Match: A0A6S7JAX4_PARCT (40S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7JAX4_PARCT)

HSP 1 Score: 353 bits (905), Expect = 2.500e-115
Identity = 174/227 (76.65%), Postives = 194/227 (85.46%), Query Frame = 2 
Query:  239 DDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGTKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAA 919
            DDKEWVPVTKLGRLVKE KIKSLE IYLFS+ IKE++I+DFFLG  LKDEV+KIMPVQK + AGQ TRFKAFVA+GD  GHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG K G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG++DCYTS+RG T TLGNF KA + A+AKTY YL+P+LW    F   PYQE TDFLAK   PK A
Sbjct:   66 DDKEWVPVTKLGRLVKELKIKSLEQIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIDDCYTSARGATATLGNFAKATFQAIAKTYEYLTPDLWGENKFTKVPYQEFTDFLAKPVLPKPA 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13410.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI4_ECTSI8.460e-15697.83S5 DRBM domain-containing protein n=3 Tax=Eukaryot... [more]
A0A835Z6C9_9STRA1.430e-12686.3040S ribosomal protein S2 n=1 Tax=Tribonema minus T... [more]
A0A7S4UVA6_9DINO9.070e-12182.43Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2BZ58_9STRA2.760e-12077.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M6TJ54_POCDA3.650e-11775.7740S ribosomal protein S2 n=3 Tax=Astrocoeniina Tax... [more]
A0A484DZT2_BRELC6.140e-11776.99S5 DRBM domain-containing protein n=7 Tax=Peronosp... [more]
K3X0V8_GLOUD3.250e-11676.55S5 DRBM domain-containing protein n=5 Tax=Oomycota... [more]
RS2_URECA1.780e-11576.5840S ribosomal protein S2 n=1 Tax=Urechis caupo Tax... [more]
A0A0P5E9E5_9CRUS2.120e-11574.6740S ribosomal protein S2 (Fragment) n=1 Tax=Daphni... [more]
A0A6S7JAX4_PARCT2.500e-11576.6540S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13410contigH-paniculata_contig13410:1148..5226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score456.4
Seed ortholog evalue9.5e-126
Seed eggNOG ortholog2880.D7FYI4
Preferred nameRPS2
KEGG rclassRC00005,RC00482
KEGG koko:K02355,ko:K02981,ko:K07151,ko:K21668
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko03010,ko04141,ko05167,map00510,map00513,map01100,map03010,map04141,map05167
KEGG ModuleM00072,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034097,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042886,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0045903,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070181,GO:0070670,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071310,GO:0071345,GO:0071353,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1903320,GO:1903322,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG0877@2759
Ec32 ortholog descriptionDouble-stranded RNA-binding domain
Ec32 orthologEc-23_003070.1
EC2.4.99.18
COG Functional cat.J
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03012,ko03029
Exons7
Model size1639
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13410.2130.1prot_H-paniculata_contig13410.2130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13410 1859..5153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.861837-UTR-H-paniculata_contig13410:1147..18581622929062.861837-UTR-H-paniculata_contig13410:1147..1858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13410 1148..1858 -
1691480717.272436-UTR-H-paniculata_contig13410:1147..18581691480717.272436-UTR-H-paniculata_contig13410:1147..1858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13410 1148..1858 -
1622929063.3661766-UTR-H-paniculata_contig13410:5153..52261622929063.3661766-UTR-H-paniculata_contig13410:5153..5226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13410 5154..5226 -
1691480717.349444-UTR-H-paniculata_contig13410:5153..52261691480717.349444-UTR-H-paniculata_contig13410:5153..5226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13410 5154..5226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929062.876792-CDS-H-paniculata_contig13410:1858..19271622929062.876792-CDS-H-paniculata_contig13410:1858..1927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 1859..1927 -
1691480717.2838907-CDS-H-paniculata_contig13410:1858..19271691480717.2838907-CDS-H-paniculata_contig13410:1858..1927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 1859..1927 -
1622929062.8874261-CDS-H-paniculata_contig13410:2091..22291622929062.8874261-CDS-H-paniculata_contig13410:2091..2229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2092..2229 -
1691480717.291415-CDS-H-paniculata_contig13410:2091..22291691480717.291415-CDS-H-paniculata_contig13410:2091..2229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2092..2229 -
1622929062.8983095-CDS-H-paniculata_contig13410:2373..24721622929062.8983095-CDS-H-paniculata_contig13410:2373..2472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2374..2472 -
1691480717.2994485-CDS-H-paniculata_contig13410:2373..24721691480717.2994485-CDS-H-paniculata_contig13410:2373..2472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2374..2472 -
1622929062.9194517-CDS-H-paniculata_contig13410:2798..29091622929062.9194517-CDS-H-paniculata_contig13410:2798..2909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2799..2909 -
1691480717.307859-CDS-H-paniculata_contig13410:2798..29091691480717.307859-CDS-H-paniculata_contig13410:2798..2909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 2799..2909 -
1622929063.322874-CDS-H-paniculata_contig13410:3250..34201622929063.322874-CDS-H-paniculata_contig13410:3250..3420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 3251..3420 -
1691480717.3163753-CDS-H-paniculata_contig13410:3250..34201691480717.3163753-CDS-H-paniculata_contig13410:3250..3420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 3251..3420 -
1622929063.3361695-CDS-H-paniculata_contig13410:3685..38621622929063.3361695-CDS-H-paniculata_contig13410:3685..3862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 3686..3862 -
1691480717.3255246-CDS-H-paniculata_contig13410:3685..38621691480717.3255246-CDS-H-paniculata_contig13410:3685..3862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 3686..3862 -
1622929063.3515286-CDS-H-paniculata_contig13410:5062..51531622929063.3515286-CDS-H-paniculata_contig13410:5062..5153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 5063..5153 -
1691480717.3342721-CDS-H-paniculata_contig13410:5062..51531691480717.3342721-CDS-H-paniculata_contig13410:5062..5153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13410 5063..5153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13410.2130.1

>prot_H-paniculata_contig13410.2130.1 ID=prot_H-paniculata_contig13410.2130.1|Name=mRNA_H-paniculata_contig13410.2130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MADGPAPEGGAGGGGWSGGGGGGGGGGDDRGRGGFGRGRGDRGRGRGRGR
GRPRDDDKEWVPVTKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGT
KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDEAGHVGLGVKCAKEVATA
IRGAIIIAKMSVVPVRRGYWGRKNGLPHTVPNKVTGKCGSVRVRLIPAPR
GTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGY
LSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF*
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mRNA from alignment at H-paniculata_contig13410:1148..5226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13410.2130.1 ID=mRNA_H-paniculata_contig13410.2130.1|Name=mRNA_H-paniculata_contig13410.2130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4079bp|location=Sequence derived from alignment at H-paniculata_contig13410:1148..5226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGATTCGTGCGCTTCCATCGGCCACACCTGGCTTGCCCAAGCATCGCC
CGAACAGGTCTAACAAGCACATCATGGCTGACGGTCCCGCGCCTGAAGGA
GGAGCTGGTGGAGGGGGGTGGAGTGGTGGTGGAGGTGGTGGAGGCGGTGG
TGGTGACGACCGCGGTAAGTGAAGCAGTAATAGTACTAAGCAATATAGTT
TGCTCTCTAAGCCACGAATATCGTGCCACACATGACCACCCCAAACTGGA
ACCTGCCCTGAGTGGAATGGGGTCGCCTGCTCGACTGTTGGCCACCGTTG
TATAAACATGCCGGCGGAGAATAGCGTTATATAAAGGTTGGATAAACGTT
GTGCATCTGCCAGCTGCAGGGATGGCCTTAGATCACGATACTTGAGGTTG
CGTGATACTAAAGGTTTCTGGACAATCAGGGATTAACAAGTTTAGGAAAT
CTATGGCTGTGGGTGAAGGCACTGCGAACTACTCACCGCGTCTGTGCACT
CCGATCGTCTGTGAGTTCAACACGTTCACGGTCGAGGAAGTTGTGGCTAA
CGTGTGTGCACTGGCAGGCATGTATGTTGCAGCAAGATTTCATGGCTCTG
GGATCCTTGGGGTAACTTTGGGAATTATGTCGTCAAAAGTGGAAATATTC
CTTATAACTGAACTATGGTGTCTCTCAGTAAGCAAAATATGTGCATGGTG
ACATTTCCTGAACAACGATGCTGTTGGGGAATTTCTCTTCAAAATAATTG
AATGTCATCCCCTACCTGAGCTTCTTGGAGGACAGGTTAGCCGAACCAAC
GGTGATCCACTTGTGGTCCGTGCCTTTTCCTGGATTGGCCTAGGAACAAA
TGTATCGCAGCGCTCAACACTCGTCTTGGAAAGTATTTGGTTACAAAATC
TATATACTGTTCCGGAATCTACAAGATGGGCAGAGAGGTGAAGTTATTCC
AGACAGTTGCGTAATAGAACAGCGACGACTATATTGAGCGGTTATGTCCT
GCGGTGGAGAAACAATTCATGCATAATTTATGTCCCATGCCCAACAATCC
TCGGCTACTTGAAGCTATTCTAACAAGTTACTTGAAGATTATATGAAGCT
GAAAAGTGACTAACCCTATCCAACCTTCGCGTTGAAATAATACAAAAACA
CTTTCATGGCATATCATTTTCCATTGAACAAGTGCAGAGCGGCGGCTGTC
GAGGCAACGAAAAGTACAAATACAGGCAAATACGAAGAATGTGTGCTGGG
GTTGCCACTTCTGAATGTCATTAGCCTTTCTGTTCTGGAACAGCCTTCGG
TGTCAATATGAACAACAGGCTGAGCATTCTCTCTCCCTCTTGACTCCTTT
CTCCGTCTTCATAGGACGCGGTGGCTTTGGCCGTGGACGTGGTGATCGCG
GGCGCGGGCGTGGTAGGGGTCGCGGGCGCCCGAGGGATGATGACAAGGAG
TGGGTGCCGGTCACCAAGCTCGGCCGCCTAGTCAAGGAGAACAAGATCAA
ATCCCTCGAGGACATCTACCTGTTCTCCATGGCTATCAAGGGTGAGTTGA
GCCCGATACTTTTTGGTGGTGCGTCGACATTTTCTTCCCGCCCGCTCCTG
TGATCTTTTAGAAGTCCGGGGGTAAAATGTAATGTGGTAACGTCAAACAT
CCTCTGAGGTATGAGTTGCAGAATGTAGTTGTCCCGATTTTCGGGACATC
GAACATAGTCCAAGTTGAACCTCGACAGAGCAGAACACATCTAAGAACAC
CCCGTTTCTTTTCACGTGTCGGACCTGTAAAAATGTACTTGCCTGCGCTC
ATGTAGAGTACCAGATTGTTGACTTTTTCCTTGGAACCAAGCTGAAGGAC
GAAGTGATGAAGATCATGCCTGTGCAAAAGGTGTCAGCCGCCGGTCAGAT
CACCCGTTTCAAGGCTTTCGTGGCTGTCGGTGACGAGGCCGGACATGTTG
GTCTCGGCGTCAAGTGCGCTAAAGAGGTGGGTTAGTGGCTTGCTGCATAA
AAAGGATACTCCTGGGCAGTGTCGACGTCTTTTTTTTATCGCGTGTAGTC
CCGTGAGGTTCGTCGTGATGACAATTTTCGTCGTCCGTTCCTTGTGATTG
GTGCAGGTCGTGATGCCCCGGGGTATATTCAACAAAGTTCGTGTGGCTAG
ACTAGCTCGGGAGACATGTGCCATCTGCTGATGAGATTCGTAGAGTGGGG
GTCATCTGAAGGCAAATAGTCTAGGAACTTTCCATATTGAGTGCTGAACA
TATGAACATTGATGTAGTTGGACGTTTTTGGCTGTGTGCTTTGTTCTCGT
TTGGAATTTCATATCAGGTGGCCACCGCCATCCGTGGCGCCATCATCATT
GCCAAGATGTCTGTGGTGCCTGTGCGCCGTGGTTACTGGGGCCGTAAGAA
TGGTCTCCCCCACACAGTGCCCAACAAGGTGCAGTACGGAGCGCGTCATT
CGACCTCTAAAAGGTCATTTCCACACTTCATAAGGTCGTATTGGCCATAG
TTGGGCTGTGACAACGCATATGATGATAATTCAACTGAAAATTGTCATGC
CCGCTAGGCAAAGGGACTGTTCCAGCGTTGATCCCATTAAGAAGCGCTTG
AATTCTGGAGAAGCAGGAAGAACATTCTCTACAACTTGAATACGGTGATG
TCCAGAAAATACTTGTTAGCGACAACGATTGTTCTACGCCCCAGTACTAA
TTTATCGTTTTGTGCGTTCTGTACATTCTTGTTGCACACATCTGTGTTGC
ACAGGTGACTGGCAAGTGCGGTTCCGTCCGTGTACGTCTGATTCCGGCTC
CCCGCGGTACAGGTCTGGTTGCTGCCCCTGTGCCCAAGAAACTTTTGAGC
ATGGTGAGTATGAAAAAAAAGGCTTGTTTCGGAACACGATCATGACGGAA
TGGCTTCTTTTACAATGTATGCCTGGGTGCGGGAGAACGGTTGAAGAAAG
AGGGAATATATTGTAATGTGTGTACCTCGATGCTCTTTCCCCGTCAGGCC
GGCGTTGAGGACTGCTACACTTCGTCTCGTGGCCACACGCGTACCCTGGG
TAACTTCGTCAAGGCTGTCTATTTCGCGCTTGCGAAGACCTACGGGTACC
TGTCTCCCGAGCTCTGGAAGCCCACTGTCTTCCAGGTGAGCGACCATTCA
CCCTGATTACCAGTTATAATGGGGCATTCTCAGTTGGAAGTTAAAGTGTC
TGTCCTCTAGCGACCGCAGCAACTGGTGAGTGGTAATTGCTGTTTCCTAT
AATCTAACAAGTCTCCCTCTCCCCAACCCTGCTGTCGCCGTGAAAACAGT
CGGCCCCGTACCAGGAGCACACCGACTTCCTGGCCAAAAATCCTGCCCCG
AAGGCGGCCGAGTTTTGAGCGCGGACACATCTCGTGTTCATGCTTTCCTG
GCATTATCTTGAAGTCGATCTAACGGGAAAGTCCAATTGGCACTCTCCAT
GTAATGGTCTGTGTTAAGAGGGTTTGGAGTGTTGATGAGTGTAACGCTGA
ACGGGTGAAACTGTAGTGAAGGAAAGCGTAAGGGCAAGTACGCTACGGTG
CGCATGTGTCGACCTTTTCTGCAATTTTTATCCTGCACGGGAATACAATC
GTCCGCCCGTGTAGTGCCGCGAGGGAGGATTTCTTGGGTGAGTGTTTGAG
GTGATTGCAGATCAGCATAACATGGGGATAGCGTTGGGCGACGCTGCGGT
GCGATGTGCCGACCCTATTGTATGTTGTCTGTTGACCTCTCGACATGTTT
TTCGCGCGTGATGGTTTTGAAGCATCATGACGGAAGATTGCTGCACCTAA
TGAGATAAATTAAACCGCCACAGACCTACGCCCGAACGGGTAGGGTAACT
AGCTCGTGAACTAAGCATGACTGGGAGTCTAGTCAAAGGTCTTTTAGTGG
GTGTAACCCCCACGCTGCCCACCCGGTTCAGCCGAACCGGGGTGGCGCCT
ACTCCGCAGAGGAATAAATAACTCTGTTCTGTGAAAGGAAATGCAGAACT
ACTTCGGTATAGAAGCACTGCATAAAGATTTTTGCCTTGGCCTTACGCAG
TCGAAAATAATGGAAAGACTGAAAAACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13410:1148..5226-

>mRNA_H-paniculata_contig13410.2130.1 ID=mRNA_H-paniculata_contig13410.2130.1|Name=mRNA_H-paniculata_contig13410.2130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig13410:1148..5226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGACGGTCCCGCGCCTGAAGGAGGAGCTGGTGGAGGGGGGTGGAG
TGGTGGTGGAGGTGGTGGAGGCGGTGGTGGTGACGACCGCGATGGCTGAC
GGTCCCGCGCCTGAAGGAGGAGCTGGTGGAGGGGGGTGGAGTGGTGGTGG
AGGTGGTGGAGGCGGTGGTGGTGACGACCGCGGACGCGGTGGCTTTGGCC
GTGGACGTGGTGATCGCGGGCGCGGGCGTGGTAGGGGTCGCGGGCGCCCG
AGGGATGATGACAAGGAGTGGGTGCCGGTCACCAAGCTCGGCCGCCTAGT
CAAGGAGAACAAGATCAAATCCCTCGAGGACATCTACCTGTTCTCCATGG
CTATCAAGGGACGCGGTGGCTTTGGCCGTGGACGTGGTGATCGCGGGCGC
GGGCGTGGTAGGGGTCGCGGGCGCCCGAGGGATGATGACAAGGAGTGGGT
GCCGGTCACCAAGCTCGGCCGCCTAGTCAAGGAGAACAAGATCAAATCCC
TCGAGGACATCTACCTGTTCTCCATGGCTATCAAGGAGTACCAGATTGTT
GACTTTTTCCTTGGAACCAAGCTGAAGGACGAAGTGATGAAGATCATGCC
TGTGCAAAAGGTGTCAGCCGCCGGTCAGATCACCCGTTTCAAGGCTTTCG
TGGCTGTCGGTGACGAGGCCGGACATGTTGGTCTCGGCGTCAAGTGCGCT
AAAGAGAGTACCAGATTGTTGACTTTTTCCTTGGAACCAAGCTGAAGGAC
GAAGTGATGAAGATCATGCCTGTGCAAAAGGTGTCAGCCGCCGGTCAGAT
CACCCGTTTCAAGGCTTTCGTGGCTGTCGGTGACGAGGCCGGACATGTTG
GTCTCGGCGTCAAGTGCGCTAAAGAGGTGGCCACCGCCATCCGTGGCGCC
ATCATCATTGCCAAGATGTCTGTGGTGCCTGTGCGCCGTGGTTACTGGGG
CCGTAAGAATGGTCTCCCCCACACAGTGCCCAACAAGGTGGCCACCGCCA
TCCGTGGCGCCATCATCATTGCCAAGATGTCTGTGGTGCCTGTGCGCCGT
GGTTACTGGGGCCGTAAGAATGGTCTCCCCCACACAGTGCCCAACAAGGT
GACTGGCAAGTGCGGTTCCGTCCGTGTACGTCTGATTCCGGCTCCCCGCG
GTACAGGTCTGGTTGCTGCCCCTGTGCCCAAGAAACTTTTGAGCATGGTG
ACTGGCAAGTGCGGTTCCGTCCGTGTACGTCTGATTCCGGCTCCCCGCGG
TACAGGTCTGGTTGCTGCCCCTGTGCCCAAGAAACTTTTGAGCATGGCCG
GCGTTGAGGACTGCTACACTTCGTCTCGTGGCCACACGCGTACCCTGGGT
AACTTCGTCAAGGCTGTCTATTTCGCGCTTGCGAAGACCTACGGGTACCT
GTCTCCCGAGCTCTGGAAGCCCACTGTCTTCCAGGCCGGCGTTGAGGACT
GCTACACTTCGTCTCGTGGCCACACGCGTACCCTGGGTAACTTCGTCAAG
GCTGTCTATTTCGCGCTTGCGAAGACCTACGGGTACCTGTCTCCCGAGCT
CTGGAAGCCCACTGTCTTCCAGTCGGCCCCGTACCAGGAGCACACCGACT
TCCTGGCCAAAAATCCTGCCCCGAAGGCGGCCGAGTTTTGATCGGCCCCG
TACCAGGAGCACACCGACTTCCTGGCCAAAAATCCTGCCCCGAAGGCGGC
CGAGTTTTGA
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