mRNA_H-paniculata_contig134.2122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig134.2122.1
Unique NamemRNA_H-paniculata_contig134.2122.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig134.2122.1 vs. uniprot
Match: D7FJD4_ECTSI (Homeobox domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FJD4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.090e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QFLEEREAGNSTSLVPPPSLQRFIGAEGFAAFVGD-RANKRQR 126
            +FLEER+ G+ ++LVPPPSLQRFIGA+GFAAF GD RA+KR R
Sbjct:  314 KFLEERQMGHGSTLVPPPSLQRFIGAQGFAAFAGDGRASKRSR 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig134.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJD4_ECTSI5.090e-1272.09Homeobox domain-containing protein n=3 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig134contigH-paniculata_contig134:310..438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog2880.D7FJD4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.DNA binding
EggNOG OGsKOG0773@1,KOG0773@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.598718-CDS-H-paniculata_contig134:309..4381622929061.598718-CDS-H-paniculata_contig134:309..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig134 310..438 +
1691480716.7406447-CDS-H-paniculata_contig134:309..4381691480716.7406447-CDS-H-paniculata_contig134:309..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig134 310..438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig134.2122.1prot_H-paniculata_contig134.2122.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig134 310..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig134.2122.1

>prot_H-paniculata_contig134.2122.1 ID=prot_H-paniculata_contig134.2122.1|Name=mRNA_H-paniculata_contig134.2122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
QFLEEREAGNSTSLVPPPSLQRFIGAEGFAAFVGDRANKRQR*
back to top

mRNA from alignment at H-paniculata_contig134:310..438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig134.2122.1 ID=mRNA_H-paniculata_contig134.2122.1|Name=mRNA_H-paniculata_contig134.2122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig134:310..438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCCTCGAGGAGCGCGAGGCGGGAAACAGCACCTCATTAGTGCCTCC
CCCAAGCCTCCAACGATTCATCGGCGCGGAAGGGTTCGCAGCATTTGTCG
GAGACAGGGCAAACAAGCGTCAGCGCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig134:310..438+

>mRNA_H-paniculata_contig134.2122.1 ID=mRNA_H-paniculata_contig134.2122.1|Name=mRNA_H-paniculata_contig134.2122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig134:310..438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCCTCGAGGAGCGCGAGGCGGGAAACAGCACCTCATTAGTGCCTCC
CCCAAGCCTCCAACGATTCATCGGCGCGGAAGGGTTCGCAGCATTTGTCG
GAGACAGGGCAAACAAGCGTCAGCGCTGACAGTTCCTCGAGGAGCGCGAG
GCGGGAAACAGCACCTCATTAGTGCCTCCCCCAAGCCTCCAACGATTCAT
CGGCGCGGAAGGGTTCGCAGCATTTGTCGGAGACAGGGCAAACAAGCGTC
AGCGCTGA
back to top