mRNA_H-paniculata_contig13391.2120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13391.2120.1
Unique NamemRNA_H-paniculata_contig13391.2120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.580e-35
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:   58 VPERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDNV 312
            V +RVT LTDER+KLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLR IN+AMFFVQP V+  LVF TYHLL NV
Sbjct:  259 VRQRVTVLTDERVKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRAINEAMFFVQPAVLSCLVFATYHLLGNV 343
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.580e-35
Identity = 75/101 (74.26%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:   22 IPCTGSVFTEVS-VPERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDNVRVP 321
            +P  G+     S V +RVT LTDER+ LTNQAV GARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLR IN+AMFFVQP V+  LVF TYHLL NV  P
Sbjct:  193 VPMQGAFSRRFSQVRQRVTVLTDERVNLTNQAVAGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRAINEAMFFVQPAVISCLVFATYHLLGNVLAP 293
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.950e-35
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:   22 IPCTGSVFTEVS-VPERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDNVRVP 321
            +P  G+     S V +RVT LTDER+KLTNQAV GARLMKINAWEPALEKEIRRVRAEEIRVLL ATLLR +N+AMFF+QP V+  LVF TYHLL NV  P
Sbjct:  146 VPAQGAFSRRFSQVRQRVTVLTDERVKLTNQAVAGARLMKINAWEPALEKEIRRVRAEEIRVLLTATLLRAVNEAMFFIQPAVISCLVFATYHLLGNVLAP 246
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.150e-16
Identity = 50/95 (52.63%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:   37 SVFTEVSVPERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDNVRVP 321
            ++   + V +RVT LTDER+ LTNQAV                       AEEIRVLLKATLLR IN+AMFFVQP V+  LVF TYHLL NV  P
Sbjct:   85 ALIVPMQVRQRVTVLTDERVNLTNQAV-----------------------AEEIRVLLKATLLRAINEAMFFVQPAVISCLVFATYHLLGNVLAP 156
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.620e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  178 RVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDNVRVP 321
            +VRAEEIRVLLKATLLR IN+AMFFVQP V+  LVF TYHLL NV  P
Sbjct:  112 KVRAEEIRVLLKATLLRAINEAMFFVQPAVLSCLVFATYHLLGNVLTP 159
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.630e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:  109 QAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTY 294
            QAVTGA L+K++AWEPAL +EI + R+ E++VL  A  LR  N+++FFVQPTV+  LVFG +
Sbjct:  338 QAVTGAHLVKMSAWEPALLREIGKARSAEVKVLRSAAELRAANESLFFVQPTVLALLVFGVH 399
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A4D9D5Z4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5Z4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.580e-12
Identity = 35/76 (46.05%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:   64 ERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGT 291
            +R ++LTD+R++LT QA+ GAR +K++ WE  LEK I+  RA E+RVL+ A L+R I++ ++F  P +VG + F T
Sbjct:  356 KRASQLTDQRVRLTKQAIQGARTIKMSGWEVLLEKRIKEARAVEMRVLIAAGLVRGIHEGIYFFSPVLVGAVTFLT 431
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: K8YYX2_NANGC (Multidrug resistance-associated protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YYX2_NANGC)

HSP 1 Score: 70.5 bits (171), Expect = 5.750e-12
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   64 ERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDN 309
            +  ++LTD+R++LT QA+ GAR +K++ WE  LEK I   RA E+RVL+ A LLR I++ + F  P +VG + F TY  L  
Sbjct:  297 KHASQLTDQRVRLTKQAIQGARTIKMSGWEVLLEKRIMEARAVEMRVLIAAGLLRGIHEGISFFSPVLVGAVTFLTYWSLGR 378
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A4D9D1H5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1H5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.240e-11
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   64 ERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDN 309
            +  ++LTD+R++LT QA+ GAR +K++ WE  LEK I+  RA E+RVL  A LLR I++ + F  P +VG + F TY  L  
Sbjct:  229 KHASQLTDQRVRLTKQAIQGARTIKMSGWEVLLEKRIKEARAVEMRVLNAAGLLRGIHEGISFFSPVLVGAVTFLTYWSLGR 310
[Close]
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Match: A0A6B0SGP7_9CETA (ABC transmembrane type-1 domain-containing protein n=1 Tax=Bos mutus TaxID=72004 RepID=A0A6B0SGP7_9CETA)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-11
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   28 CTGSVFTEVSVPERVTELTDERLKLTNQAVTGARLMKINAWEPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHLLDN 309
            CTG+ F+  S+  +   LTD+R+++ ++ +TG + +K+NAWE +    I R+R +EI  +LK++ LR +N A FF    ++ F+ F T  LLDN
Sbjct:  250 CTGNSFS--SLRSKTAALTDDRIRIMSEVITGIKTIKMNAWEKSFIDLITRLRRKEISKILKSSYLRAMNLASFFAVSKIMIFVTFITNELLDN 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13391.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW6_ECTSI1.580e-3585.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSW4_ECTSI1.580e-3574.26Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI2.950e-3572.28Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE3.150e-1652.63ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDN6_9PHAE2.620e-1277.08ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA2.630e-1256.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D5Z4_9STRA3.580e-1246.05Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8YYX2_NANGC5.750e-1245.12Multidrug resistance-associated protein (Fragment)... [more]
A0A4D9D1H5_9STRA1.240e-1145.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6B0SGP7_9CETA2.060e-1138.30ABC transmembrane type-1 domain-containing protein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13391contigH-paniculata_contig13391:4721..6526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue6.2e-30
Seed eggNOG ortholog2880.D8LSW6
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size323
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.4637406-CDS-H-paniculata_contig13391:4720..48991622929061.4637406-CDS-H-paniculata_contig13391:4720..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13391 4721..4899 +
1691480716.676005-CDS-H-paniculata_contig13391:4720..48991691480716.676005-CDS-H-paniculata_contig13391:4720..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13391 4721..4899 +
1622929061.4743738-CDS-H-paniculata_contig13391:6384..65261622929061.4743738-CDS-H-paniculata_contig13391:6384..6526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13391 6385..6526 +
1691480716.6888673-CDS-H-paniculata_contig13391:6384..65261691480716.6888673-CDS-H-paniculata_contig13391:6384..6526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13391 6385..6526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13391.2120.1prot_H-paniculata_contig13391.2120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13391 4721..6526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13391.2120.1

>prot_H-paniculata_contig13391.2120.1 ID=prot_H-paniculata_contig13391.2120.1|Name=mRNA_H-paniculata_contig13391.2120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MTICTADIPCTGSVFTEVSVPERVTELTDERLKLTNQAVTGARLMKINAW
EPALEKEIRRVRAEEIRVLLKATLLRVINKAMFFVQPTVVGFLVFGTYHL
LDNVRVP
back to top

mRNA from alignment at H-paniculata_contig13391:4721..6526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13391.2120.1 ID=mRNA_H-paniculata_contig13391.2120.1|Name=mRNA_H-paniculata_contig13391.2120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig13391:4721..6526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAATTTGTACCGCGGACATCCCATGCACAGGCAGTGTTTTCACGGA
AGTTAGCGTCCCCGAGCGCGTGACCGAGCTTACAGACGAGCGATTGAAAC
TGACCAACCAAGCCGTGACCGGAGCTAGGTTGATGAAGATCAACGCGTGG
GAGCCGGCGCTGGAGAAGGAGATACGCAGGCAAGAAGAATAGAGAGAACA
GACTCATATAGCACGCCTAGCTTATTCCCTGCAGACTCGTAGCTTACGTT
GCCTATTTCCGTTGGTGACAATTTCTCGCACGGATAAGTCATTTCTAGGC
CTGGAAGTATGACCGACTAATGATCTGTGTTTTTTGTTTCTTTGAACTAA
AGTGTCCGTTATTTTTTGCACCCGTTCTCGTTCTTCTCTAAATCCAAGAG
AGTGAGGCCCAACTCGGCAAAAAAAAACACTTTCAGACCTCAGATGCGCT
CACCAGCTGTCTAGAGCTGGCTAAGCGTTGTACATATGCAATTTCTGTTC
TCATTGTACTTATAGTAGTAACTCCAAAAAAATACACATTTATTTCCAAA
AGACGTTTGAGACGCCGGTTTTTTCCCGGTACCAATACCAGGACTAAGAT
TAACGAGCGCTATGAAAGGGAAAATGTCTGCCCTAGAAAAAACAAATTAC
AACCAAACATACGTCTCCGAAAAACAAAAAATAACGAGAGAGGAATAATT
AACGAAACCAAACGTGAATCTTCGCCAGGCGAGCGAGAGAAAATGCCAAC
CAAACTGTATTCACCGGTCGGCGAGAAATTGTTTTGATGGGCCGCACCCG
CTCCCTCCGCCGCCAAGCCCCCGGCGACAATTAGTGCGGGTGCCCAACAC
CCACGGGCCTGACGGTCACAAGGTAAGGGGTATCGACTTCATTCCCGCGA
AGCGAGGGCGCTCCGCGCTATACACTCATCAAGCCGGCTGCTTCGGCTAG
AAATATCGTGAAGGAGATCTGCCGAGAGATGTCACCAGGTCTTAGAGGAG
TGACGCGCCCGCAGACGCCTCCATACGACGAAGGCTCGCTCCCTCGTGCG
CCCAAGACTTTCGTCCCTTCAAAAGAGCTCTCTACTCTGTCCGCCGCGCG
TATGCATGAAAAAATGCGTTTCGACAACCGGCGTTTGATATGATGCGCCC
TGAGGAATAGAAACCGAGCCAGCAAAAACAACGAGTGTACATTGACCAGG
AGTGAGAGCGGCATGCAGCTTCGTACACACGCACACGACCACTCGAACTT
TCCGCGCCCTCACACTCATACAACCCTACTGTTTATTTTGCAATATTTTT
CCGAGCAGGGCTGTTCTGTACTAGAGCGCGCACCTCTTTCAAACTGAAAT
TTACTGTTTTTGGTCGCTGGGTGTGGCAGGCAGAGCCCTCGGCTGTAGGA
TAGAGCGCTCACGTCTCCCCCGCCTAAGTTTGGTGTCTACAAATTTGATG
TGTTGGCGTACGTCTCCCCCACCCCCGCTTGACGTCAGTACATGAATCAT
TCTCCAAAATTGACAACACTGTTGTCTGATGCTGGACGAAATGTAGCAGT
TGATCAAATATTCTTTCATGGACCCTTTATCTAGGTATGATATTGTTGAA
ATTCCATTCGTTTGCTCAACCCGACCAGAAACTCTGGTGTTTTTTCCCCT
TGTGGTTTCGACAGGGTTCGGGCGGAGGAGATTCGAGTGCTGCTAAAGGC
GACCTTGCTCAGAGTGATCAACAAAGCCATGTTTTTCGTGCAGCCGACGG
TGGTTGGCTTCCTGGTGTTCGGCACTTACCACCTACTCGACAATGTGCGC
GTGCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13391:4721..6526+

>mRNA_H-paniculata_contig13391.2120.1 ID=mRNA_H-paniculata_contig13391.2120.1|Name=mRNA_H-paniculata_contig13391.2120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig13391:4721..6526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAATTTGTACCGCGGACATCCCATGCACAGGCAGTGTTTTCACGGA
AGTTAGCGTCCCCGAGCGCGTGACCGAGCTTACAGACGAGCGATTGAAAC
TGACCAACCAAGCCGTGACCGGAGCTAGGTTGATGAAGATCAACGCGTGG
GAGCCGGCGCTGGAGAAGGAGATACGCAGATGACAATTTGTACCGCGGAC
ATCCCATGCACAGGCAGTGTTTTCACGGAAGTTAGCGTCCCCGAGCGCGT
GACCGAGCTTACAGACGAGCGATTGAAACTGACCAACCAAGCCGTGACCG
GAGCTAGGTTGATGAAGATCAACGCGTGGGAGCCGGCGCTGGAGAAGGAG
ATACGCAGGGTTCGGGCGGAGGAGATTCGAGTGCTGCTAAAGGCGACCTT
GCTCAGAGTGATCAACAAAGCCATGTTTTTCGTGCAGCCGACGGTGGTTG
GCTTCCTGGTGTTCGGCACTTACCACCTACTCGACAATGTGCGCGTGCCG
GGTTCGGGCGGAGGAGATTCGAGTGCTGCTAAAGGCGACCTTGCTCAGAG
TGATCAACAAAGCCATGTTTTTCGTGCAGCCGACGGTGGTTGGCTTCCTG
GTGTTCGGCACTTACCACCTACTCGACAATGTGCGCGTGCCG
back to top