mRNA_H-paniculata_contig1339.2118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1339.2118.1
Unique NamemRNA_H-paniculata_contig1339.2118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: D7FKU7_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU7_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 8.600e-109
Identity = 162/207 (78.26%), Postives = 176/207 (85.02%), Query Frame = 3 
Query:  471 GYSGQTTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGDASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVHAEASQVSPANAR 1091
            G  G+  WIQ+FCRTPGNEFFAEVP SFIRESMN IDIGRGV+IP  +EALGV+LGE R+   +HGD    AS VQSSAALLYGLLHARFLVSPQGLKV LEKFSKAD+GRCPRV+CQGQAVLPVGE+DRP QSSV+VFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKT PN   YVPRV+GF+VHAE       + R
Sbjct:   32 GGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGD--NNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSAPDQDGR 236
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: UPI00098DFA46 (putative casein kinase II subunit beta-4 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFA46)

HSP 1 Score: 187 bits (476), Expect = 2.710e-50
Identity = 90/200 (45.00%), Postives = 133/200 (66.50%), Query Frame = 3 
Query:  468 SGYSGQ-TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            SG  G+ T+WI  FC   GNEFF EV + +I++  NL   G   ++P    AL ++L       S HGD    ++  +V+S+A +LYGL+H R++++ +G+   L+KF   D+GRCPRV+C GQ  LPVG++D P  S+V+++CP+C D+YYP S Y    DGA++GTT PHL L+ +P LK +  +QRYVPRV+GF++H
Sbjct:   77 SGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVE----SSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYPHLKPQKPSQRYVPRVFGFKIH 270
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A6I9RZI4_ELAGV (Casein kinase II subunit beta n=2 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RZI4_ELAGV)

HSP 1 Score: 187 bits (474), Expect = 6.480e-50
Identity = 88/199 (44.22%), Postives = 131/199 (65.83%), Query Frame = 3 
Query:  468 SGYSGQ-TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            SG  G+ T+WI  FC   GNEFF EV + +I++  NL   G   ++P    AL ++L       S HGD    ++  +V+S+A +LYGL+H R++++ +G+   LEK+   D+GRCPRV+C GQ  LPVG++D P  S+V+++CP+C D+YYP    +  DGA++GTT PHL L+ +  LK +  AQRYVPRV+GF++H
Sbjct:   86 SGSDGEDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC--GLSSQVPYYDYALDLILDVE----SSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQDVDGAYFGTTFPHLFLMTYGHLKPQKPAQRYVPRVFGFKIH 278
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A7S1VF37_9EUKA (Casein kinase II subunit beta n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VF37_9EUKA)

HSP 1 Score: 184 bits (468), Expect = 6.910e-50
Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 3 
Query:  465 ESGYSGQTTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGDASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVHAEASQVSPANARDHTTNKGR 1115
            E+  S  + WIQ +C   GNEFF EV E FIR++ NL   G   ++P  ++AL  +LG+            ++  +++ SA LLYGL+HARF+V+  G+++ + KF   ++GRCPRV C+ Q V+PVGE+D   Q   RVFCPRC D+Y P S +  + DGAF+GTTLPHLLL  +P+L      Q Y PR++GFR+H+ A+    A   ++  NK R
Sbjct:    8 ETDTSSDSPWIQWYCSLVGNEFFCEVDEDFIRDNFNLT--GLSAQVPYYEDALDRILGDDVAPDDF---TEERLELIEQSAQLLYGLIHARFIVTGGGVQMMMGKFEVGEFGRCPRVCCEDQPVIPVGESDVAGQRRARVFCPRCQDIYVPRSRHHASLDGAFFGTTLPHLLLSTYPQLVPSLPTQSYTPRIFGFRIHSSAANYPKAKKGEN--NKRR 218
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A6J0JEP3_RAPSA (Casein kinase II subunit beta n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JEP3_RAPSA)

HSP 1 Score: 186 bits (473), Expect = 7.720e-50
Identity = 83/196 (42.35%), Postives = 130/196 (66.33%), Query Frame = 3 
Query:  468 SGYSGQTTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGDASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            SG  G+T+WI  FC   GNEFF EV E ++++  NL   G   ++P    AL ++L     ++ +  +  ++  +V+S+A +LYGL+H R++++ +GL   LEK+   D+GRCPRVFC GQ+ LPVG++D P  S+V+++CP+C DLYYP    +  DGA++GTT PHL L+    +K +  +Q YVP+++GF+VH
Sbjct:   81 SGSEGETSWISWFCNLRGNEFFCEVDEDYVQDDFNLC--GLSGQVPYYDYALDLILDVESSNSDMFTE--EQNELVESAAEMLYGLIHVRYILTTKGLTAMLEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDLYYPRSKYQDIDGAYFGTTFPHLFLMAHGNMKPQKPSQSYVPKIFGFKVH 272
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A061RZ77_9CHLO (Casein kinase II subunit beta n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ77_9CHLO)

HSP 1 Score: 186 bits (473), Expect = 8.180e-50
Identity = 91/219 (41.55%), Postives = 136/219 (62.10%), Query Frame = 3 
Query:  468 SGYSGQTTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGDASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVHAEASQVSPANARDHTTNKGRAN 1121
            SG    T+WI  FC   GNEFF EV E ++++  NL   G  V++P  + AL ++L     +  +  +  ++  M++S+A LLYGL+H R++++ +GL    EK+   D+GRCPRV C GQ  LPVG +D P  SSV++FCP+C D++ P S Y    DGA++GTT PHLLL+ +P L+     ++YVPRV+GF++H  A Q  P     H  + G+A+
Sbjct:   36 SGTDEDTSWISWFCSLKGNEFFCEVDEDYVQDDFNLS--GLSVQVPYYEYALDLILDVDSPTEDVLSE--EQHEMIESAAELLYGLIHVRYILTTRGLSAMFEKYKNVDFGRCPRVHCNGQPCLPVGCSDIPRNSSVKIFCPKCEDIFLPRSKYHSNIDGAYFGTTFPHLLLMSYPILRPVKPVEQYVPRVFGFKLHHSARQALP-----HGQSSGKAS 245
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A453CJQ9_AEGTS (Casein kinase II subunit beta n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CJQ9_AEGTS)

HSP 1 Score: 184 bits (467), Expect = 9.220e-50
Identity = 88/200 (44.00%), Postives = 133/200 (66.50%), Query Frame = 3 
Query:  468 SGYSGQ-TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            SG  G+ T+WI  FC   GNEFF EV + +I++  NL   G   ++P  + AL ++L       S HGD    ++  +++S+A +LYGL+H R++++ +GL   L+K+   D+GRCPRV C GQ  LPVG++D P  S+V+++CP+C DLYYP S Y    DGA++GTT PHL L+ +P LK +  +Q+YVP+V+GF++H
Sbjct:   22 SGSDGEDTSWISWFCSLRGNEFFCEVDDDYIQDDFNLC--GLSGQVPYYEYALDLILDVE----SSHGDMFTEEQNELIESAAEMLYGLIHVRYILTSKGLAAMLDKYKNYDFGRCPRVHCSGQPCLPVGQSDIPRSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLFLMTYPHLKPQKPSQQYVPKVFGFKLH 215
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A0B2PLF4_GLYSO (Casein kinase II subunit beta n=5 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2PLF4_GLYSO)

HSP 1 Score: 186 bits (471), Expect = 9.700e-50
Identity = 88/193 (45.60%), Postives = 129/193 (66.84%), Query Frame = 3 
Query:  486 TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            T+WI  FC   GNEFF EV + +I++  NL   G   ++P    AL ++L       S HGD    ++  +++S+A +LYGL+HAR++++ +G+   L+K+   D+GRCPRV+C GQ  LPVG++D P  S+V+++CPRC DLYYP S Y    DGA++GTT PHL L+ + +LK +  AQ YVPRV+GF+VH
Sbjct:   73 TSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVE----SSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKVH 259
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A835S5B5_VANPL (Casein kinase II subunit beta n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S5B5_VANPL)

HSP 1 Score: 186 bits (473), Expect = 1.060e-49
Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 3 
Query:  393 DHTKRIASDLRGGGLGRGDRRNQSESGYSGQ-TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            DH    +S+++     + D      SG  G  T+WI  FC   GNEFF E+ + +I++  NL   G   ++P    AL ++L       S HGD    ++  +V+S+A +LYGL+HAR++++ +G+   LEK+   D+GRCPRV+C GQ  LPVG++D    S+V++FCP+C D+YYP S Y    DGA++GTT PHL L+ +P LK +  +QRY+PRV+GF++H
Sbjct:   66 DHLPAGSSNIKCSDESKTDSEESDVSGSDGDDTSWITWFCNLRGNEFFCEIDDEYIQDDFNLC--GLSSQVPYYDYALDLILDVE----SSHGDILTEEQNELVESAAEMLYGLIHARYVLTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDISRSSTVKIFCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYPHLKPQKASQRYIPRVFGFKIH 284
[Close]
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Match: A0A6P3Z3J9_ZIZJJ (Casein kinase II subunit beta n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3Z3J9_ZIZJJ)

HSP 1 Score: 184 bits (468), Expect = 1.670e-49
Identity = 85/192 (44.27%), Postives = 126/192 (65.62%), Query Frame = 3 
Query:  486 TTWIQNFCRTPGNEFFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGD--ASQKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQGQAVLPVGETDRPMQSSVRVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTEPNAQRYVPRVYGFRVH 1055
            T+WI  FC   GNEFF EV + +I++  NL   G   ++P    AL ++L       S HGD    ++  +V+S+A +LYGL+HAR++++ +G+   LEK+   D+GRCPRV+C GQ  LPVG++D P  S+V+++CPRC D+YYP    +  DGA++GTT PHL L+ +  LK    +Q YVPRV+GF++H
Sbjct:   60 TSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVD----SSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMAAMLEKYKNYDFGRCPRVYCAGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQDIDGAYFGTTFPHLFLMTYGHLKPHKASQSYVPRVFGFKLH 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1339.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU7_ECTSI8.600e-10978.26Casein kinase II subunit beta n=2 Tax=Ectocarpus T... [more]
UPI00098DFA462.710e-5045.00putative casein kinase II subunit beta-4 isoform X... [more]
A0A6I9RZI4_ELAGV6.480e-5044.22Casein kinase II subunit beta n=2 Tax=Arecaceae Ta... [more]
A0A7S1VF37_9EUKA6.910e-5043.12Casein kinase II subunit beta n=1 Tax=Sexangularia... [more]
A0A6J0JEP3_RAPSA7.720e-5042.35Casein kinase II subunit beta n=1 Tax=Raphanus sat... [more]
A0A061RZ77_9CHLO8.180e-5041.55Casein kinase II subunit beta n=1 Tax=Tetraselmis ... [more]
A0A453CJQ9_AEGTS9.220e-5044.00Casein kinase II subunit beta n=1 Tax=Aegilops tau... [more]
A0A0B2PLF4_GLYSO9.700e-5045.60Casein kinase II subunit beta n=5 Tax=Glycine subg... [more]
A0A835S5B5_VANPL1.060e-4941.33Casein kinase II subunit beta n=2 Tax=Vanilla plan... [more]
A0A6P3Z3J9_ZIZJJ1.670e-4944.27Casein kinase II subunit beta n=1 Tax=Ziziphus juj... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1339contigH-paniculata_contig1339:21762..27115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue5.7e-92
Seed eggNOG ortholog2880.D7FKU7
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons6
Model size2486
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1339.2118.1prot_H-paniculata_contig1339.2118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1339 21989..25780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.2189698-UTR-H-paniculata_contig1339:21761..219881622929061.2189698-UTR-H-paniculata_contig1339:21761..21988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1339 21762..21988 +
1691480716.5513995-UTR-H-paniculata_contig1339:21761..219881691480716.5513995-UTR-H-paniculata_contig1339:21761..21988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1339 21762..21988 +
1622929061.3148818-UTR-H-paniculata_contig1339:25780..271151622929061.3148818-UTR-H-paniculata_contig1339:25780..27115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1339 25781..27115 +
1691480716.6227074-UTR-H-paniculata_contig1339:25780..271151691480716.6227074-UTR-H-paniculata_contig1339:25780..27115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1339 25781..27115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.2301536-CDS-H-paniculata_contig1339:21988..223001622929061.2301536-CDS-H-paniculata_contig1339:21988..22300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 21989..22300 +
1691480716.5605116-CDS-H-paniculata_contig1339:21988..223001691480716.5605116-CDS-H-paniculata_contig1339:21988..22300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 21989..22300 +
1622929061.242279-CDS-H-paniculata_contig1339:23612..237161622929061.242279-CDS-H-paniculata_contig1339:23612..23716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 23613..23716 +
1691480716.5721056-CDS-H-paniculata_contig1339:23612..237161691480716.5721056-CDS-H-paniculata_contig1339:23612..23716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 23613..23716 +
1622929061.2545874-CDS-H-paniculata_contig1339:24101..241941622929061.2545874-CDS-H-paniculata_contig1339:24101..24194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24102..24194 +
1691480716.5832613-CDS-H-paniculata_contig1339:24101..241941691480716.5832613-CDS-H-paniculata_contig1339:24101..24194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24102..24194 +
1622929061.2687316-CDS-H-paniculata_contig1339:24664..247391622929061.2687316-CDS-H-paniculata_contig1339:24664..24739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24665..24739 +
1691480716.5912874-CDS-H-paniculata_contig1339:24664..247391691480716.5912874-CDS-H-paniculata_contig1339:24664..24739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24665..24739 +
1622929061.2838948-CDS-H-paniculata_contig1339:24932..250021622929061.2838948-CDS-H-paniculata_contig1339:24932..25002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24933..25002 +
1691480716.602116-CDS-H-paniculata_contig1339:24932..250021691480716.602116-CDS-H-paniculata_contig1339:24932..25002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 24933..25002 +
1622929061.2956188-CDS-H-paniculata_contig1339:25510..257801622929061.2956188-CDS-H-paniculata_contig1339:25510..25780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 25511..25780 +
1691480716.6111636-CDS-H-paniculata_contig1339:25510..257801691480716.6111636-CDS-H-paniculata_contig1339:25510..25780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1339 25511..25780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1339.2118.1

>prot_H-paniculata_contig1339.2118.1 ID=prot_H-paniculata_contig1339.2118.1|Name=mRNA_H-paniculata_contig1339.2118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
MTVRRVLRLIYLAVSLLREKVPLLSATFICRGLGGRATGNIGHIFHSAAS
PEGSGDHTKRIASDLRGGGLGRGDRRNQSESGYSGQTTWIQNFCRTPGNE
FFAEVPESFIRESMNLIDIGRGVEIPNIKEALGVLLGETRVSTSIHGDAS
QKASMVQSSAALLYGLLHARFLVSPQGLKVALEKFSKADYGRCPRVFCQG
QAVLPVGETDRPMQSSVRVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLL
LLGWPELKTEPNAQRYVPRVYGFRVHAEASQVSPANARDHTTNKGRANVE
HGVAGPV*
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mRNA from alignment at H-paniculata_contig1339:21762..27115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1339.2118.1 ID=mRNA_H-paniculata_contig1339.2118.1|Name=mRNA_H-paniculata_contig1339.2118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5354bp|location=Sequence derived from alignment at H-paniculata_contig1339:21762..27115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCGTGTCAGCAGTGCATGATAGTGCAACGAGGCAAGGCGGATTGTAT
CGAAAACACTAAGAGCACAGTACGACGCAGTACAGGACAAGACAGGCGCT
TCCGCAGGACTCTTACAGCCCATTGATTCTTGCTCTCGTCCATGCACTTG
TGAGGCTATGCAACCCAATAAACGATCAACTATAAAAGTCACCACACATA
CCGGAACAGCAGTGGGCACGTGTTTTCATGACCGTCCGCCGGGTGCTGCG
CCTCATCTACCTCGCCGTGTCCCTTCTTCGAGAGAAGGTCCCTCTTTTAT
CCGCGACCTTCATATGCAGAGGGCTTGGAGGTAGAGCAACAGGTAATATC
GGGCATATATTCCATTCTGCTGCTTCACCAGAGGGCAGTGGAGACCACAC
CAAGAGAATAGCTAGTGACCTTCGAGGGGGGGGCTTGGGACGAGGTGACC
GACGGAATCAAAGCGAAAGCGGGTACTCCGGACAGACAACATGGATACAG
AACTTCTGTCGCACGCCTGGAAACGAGTTTTTTGCCGAGGTATTCATGAA
CAGAGCAGTATGCATCATGCAATACGTGCGACTTTATGATGTCGGTTTTA
TTTGCTGGTGCCATCTGTCTGTACCCCCAACACTCACCAGTTGAAATTCG
TTCAAGCTCCAGAGCGGAGTCACAGTTCTAATAATTTCATACATGCGACG
GTAACACTCTGGTGGCGCAACAAGTACCAATGCACATGTGATTCAAGTCG
TGTGTACACGGCTGTACGTACGTACACGTTTTGCCATTACTGATGCGTAT
AATATATGATGTGTGCCTGTTTCCCACGGATTAACTGTGGAACCCTATGG
ATTGTTCGCATACTTTTTGTCCATAAGTGATCCGTACAATCTGTACAACC
CATATATGTTTGTCCACATTGATCTAAACCCTAAGCATCTTTCGAACACG
ATTGCCCATCACTAACACGTAGGGTACAGGGTGCAGGGGTCATGAGCCGT
CGGATGTGCGAATGATTTTGCTTTGGTCTTGTGACCTCAGCCAATACCTG
TGTCTCTAGCTCCAATACCGGTCCGTACGGGTAATACTCGGCGTGTAACA
CCTCCAGCTGATGCCCTTTCTCATCCTCTATTTTCGTGAACGAAAAGTCT
GCTACTCCTGGTAACGAAAGTTGTGTCGTTGGCCAAATTCGATCGACTAC
GAATAAACTGATGATCCTGCTTGTTATAAAGTTATACAGACAGTAGAACG
TCCGACTTTAAACTACGGTACTGTGTGGTCGAAAGGCAACTAACAGAAAC
GATTCTAACTGGTCCCTTTTCGGACAAAAACGGTTACGGATAAAATACAT
TTGAAACAACGTTGTCAGCACCCCCGAAACGGGCAAGAACCCTCTTTTAG
GGGGGCATATGCATATCGCCACATTCCCTGATCTACCTCAAAACTCCCAG
CCAAGAAATCCTTCCCTTGTCTCTTTATCGTTGTCAAAAGCGCGGGCCCG
ATCATACGAGTGCATCTTCAAGCGTTTCTGCCCATAGACCGACCGATTCA
AAACCTCCCAACGAAAAAAAAAAACTGTCAACCGTTGTAGTCGAACCAAG
TACCGATTATATCGGATTTCTTGACCGTTCCAGCCGCATCCATAGCCAAT
TTAGTTCGGCAGAGACACGAGGAAAATCTGGCTGCGACTGTTCAACCATG
AACTTACCGATCGCCTGCCTGTGCACCAAACTACCCGCAACTGGTCGCAA
ACGGAGCATCACGTCATCCACAGTTTCTTTAACCGCTGAACGTCCGCGCC
CTCTGCTTGTGTGGTGATGATCCTGCTGTATGTGTGACAACTGGTGTGTA
GGTTCCAGAAAGCTTCATTCGCGAGAGCATGAATCTCATCGACATCGGAA
GGGGAGTAGAGATACCCAACATCAAGGAGGCGCTTGGCGTCCTATTGGGA
GAAACGTGAGTAAAGAGAAATGCAGGGCAGTACGTACATTCGACTCGTGG
GATCGCGTTATGTTGTGCAGTTCGATAAAAGGGCAACATATAGTAGTAGG
CGAAAGTACCGGCAAGTCTGTCGAGCTGGCGACGTCACACAACACCAACA
CCAAGAAATCGACTTTTGCAAATCCCACCGTATGATTTTCACGAGGGTAG
AGCGAGGGTAAGAGAAACCAAAAGGGTCGCTCGAAACTTTCGACTTTAGG
GCAGATAGGTCAACGATAATGAGCTTGGACAACAAGTCACGTAGCAATAT
CAATGCTATGAAAACGCAAGCGCGTTTCTCATGACGATCTGCTAGTAAAC
GAATCGACTCGATGCCGTTCACGTGTTTGCTATGTCGCAGCCGAGTTAGC
ACCAGCATACACGGTGATGCTAGCCAGAAGGCGTCCATGGTACAGTCATC
AGCGGCCCTCTTATATGGCCTGTTACACGCAAGGTATTTACCGATCGTGT
TATCGTAGGAGATTCCCCTCTAATTGATGTATATTTAGTTTTGCTGATAA
GTATACACAACTAGCCTTGGGCATAGCTGCATAGCCTCAACATGTGTACG
ATGGAGTTATTATACGAGCGTCCCCTCCCCCCGTTGCATTTACGAAACGG
ACAGGCTTCCGAAAAATGCTTTACAGGGAACCCGGTCAAACATCGGTCGT
CCCGAGACCCTTTCTCCAGGCGCAGTTGGTGATGACTGTGGATTGTTCTA
GCTGAACGTACGAGTAAATCGCAATCAAAAGCTGCGACGAAATGATTGAT
TCCGCAGACCGATCTACAGAAATATATGCGAGGGTGAGGTACAGCTTAGT
ACTTTTATGATGTAACAAGCCGCCGTAATCCAAGGTAATGTCCATGCACG
TTTCATGCTCAGTTACAGCTCTGTATTTCGCTCGCCCTCGTCTTTCCGCC
AAGGTTTTTGGTGAGCCCGCAAGGCTTGAAAGTGGCCCTGGAGAAGTTTT
CCAAGGCCGACTACGGGAGATGCCCCAGGTATGCTAGATTATTCATTGGA
AATGTAGGTTTAAGGTTGGGAAGGACTGGTCACGTCACTATTGTTGATCA
TTTTTGTTATGTAAAAAACCGGGCACGTTGTTTTGGAAGATTTTCTGTTT
ATCGGGAGATGATGATCTGCGTGGTTGTCTTTGTTTCCAAGGCGAGCTCG
CTGATTGTCCGTGTCGAACAGGGTTTTTTGCCAGGGGCAGGCGGTGCTGC
CAGTGGGAGAAACAGACAGGCCCATGCAGAGCTCGGTCAGGGTGAGCTCC
ACGACTGAAACATATAATTTACTGCTGTTATTGAAGATGATTATTTTGAG
CACTTTACCCTAGACTGTTTACATGAGGCTGACTTGCACAGTGCCATACA
GTACCATAGACTTTCACCTATTGCATCGCAGGCCTAGCCTTTATTCTGAG
TATACACAGCTTGCGGAAGCATCACACGAGAAATGTAACTGGATGGTGTT
TATGTTTTCCGTCTCAAAAGAGATGGAGAACGTGCTGGTTTAACTTACGT
ATGATGGATTTTATTTTCGAAGTCGCAGTTGCTCGAGTCGCCGTGGTGTA
TAGTGTAGTATAGTATAGCTGTCCTAAAATACAGTACTCGTCGTGAGAGT
TACCACGTGATTTTCCCCAGCACTGTTTGGCTACGTTTATGCATATCTCC
AGTGCACTAACTGACCGACGATTACTGCAGCATTCCTCACGCAGCGGTTT
CTTTGACGTCCGGGCGGGTGGGGGGGCGTCATGGTTCTACACGACTCAGG
TGTTTTGTCCGCGCTGCGGGGACCTGTATTATCCTTCGGGCTACGTGCGA
GCATGCGACGGAGCCTTTTGGGGAACCACCCTTCCACACCTCCTACTCCT
GGGATGGCCAGAGCTGAAAACAGAGCCAAATGCGCAACGATACGTGCCAC
GGGTGTACGGCTTCAGAGTCCACGCCGAAGCATCGCAGGTTTCTCCCGCG
AACGCTCGCGATCATACCACGAACAAAGGCAGAGCGAATGTAGAGCATGG
GGTGGCAGGGCCAGTGTAATATACGGTATTGCGCAAGATTGCATGTGTCC
ACTGTAAGGTGTGTGTTGCTAATGTGTCTAATGGTTCATGATTCCCACGC
GGATTTTTTTCTTTCTGGTGCTGCAGGTTGTGTGTATGTGTGTGCGTGTA
AGTGGCTATTGGTCTCTTCTTTCGCGTATACATAATAGCTTTGGCATGTG
CGTATGTTTCAATGGCCAGGGGAGAGTGCAGAAGACCCAGATGCTTCGCA
GCCTTCCCTGGCAATGACTGATGTTTTGTTCCTAGTGCAGTGGACCGAAC
CTCGTTATTGGTGTTCGATCACGTTGTGTTCGACTTCGGTCCAAAATATG
GTTGTTTTGTTTTGTTTTATTTTGTTTGTTGATCAAGGAAACACGCACAC
ACTCTCTCGCACTAGAGCTAGAGACTCAGAAAAGGGATCGGGGCGAGCCC
TCTGAGAGGCTCAAAGTAGTGCGCCAAGCGGGCACCCTTGCCCAACGCAG
CCTCTAGAACGAGGGACGAAGGGCGAAAACAGATAGAAAACACTGAAAAT
CGTACATGTAAAGACAATATATCCGTTCGGTTAAGTCGGTTATTTGGTAA
CGCACTAAGTTCGAAAGGTGACACATTCAAACCTAGTTAGGTGCAACAAG
AACTACCACGCCTGGTCCTCGGTTCCTCCGCAATGAATATTCGAATTTCG
ACGTTTATCCTGCCTGTACATGATCAATCCAACCCAACCTGACCCGATCG
CACGAACGAAGGCAATAGAAGACCCCAAAAAACTATACACATTTTTGGTT
GTGCGTATGTACGACATTAGTACCATGTAAACGTTTTACGTCGTAGACGT
TTTGAATGGCTTGGTCTGCGTCCAACGCCAACAACGTGTTGGTTTCAAAA
TGGGTTATTTTTGTATCATGTACTATAGTTTTGTTCTTATCTGGTGTGTT
TGGGGGTCGCAGTTCCAGCGGCTGCCTGCTGCATGGCTGGTTGCGTGTTA
TGATTGAAGCGAACCGGCGAGAAAAATGTGGATAGCGTAGACGTGTGCCC
CATGTTTATATTTGTGCACAGATTCTCATGATTAACTATATATTGCTCTG
AACTACGAGCAAAGTGATAGGTTCAGGGTTTGTTTTTGGTATTTTTCTCT
CCTGGTGTCTTGTCTTTTCTGCAGTAATAACTGTCCTGCTCGTAGAAGGC
GACGGAAAATAGGATACATGTAAGATACACAGTAGTACTGTACCACGGGT
TCGGCTATCGTGGCTCCAGCCGCGGCCTGTGTGGCTAGTGGTGTGGCGAG
CTTGTCTGGTGTGCGCCGGCGTTACCGATGACACACCCCCACCCCCTATG
TGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1339:21762..27115+

>mRNA_H-paniculata_contig1339.2118.1 ID=mRNA_H-paniculata_contig1339.2118.1|Name=mRNA_H-paniculata_contig1339.2118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig1339:21762..27115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGTCCGCCGGGTGCTGCGCCTCATCTACCTCGCCGTGTCCCTTCT
TCGAGAGAAGGTCCCTCTTTTATCCGCGACCTTCATATGCAGAGGGCTTG
GAGGTAGAGCAACAGGTAATATCGGGCATATATTCCATTCTGCTGCTTCA
CCAGAGGGCAGTGGAGACCACACCAAGAGAATAGCTAGTGACCTTCGAGG
GGGGGGCTTGGGACGAGGTGACCGACGGAATCAAAGCGAAAGCGGGTACT
CCGGACAGACAACATGGATACAGAACTTCTGTCGCACGCCTGGAAACGAG
TTTTTTGCCGAGATGACCGTCCGCCGGGTGCTGCGCCTCATCTACCTCGC
CGTGTCCCTTCTTCGAGAGAAGGTCCCTCTTTTATCCGCGACCTTCATAT
GCAGAGGGCTTGGAGGTAGAGCAACAGGTAATATCGGGCATATATTCCAT
TCTGCTGCTTCACCAGAGGGCAGTGGAGACCACACCAAGAGAATAGCTAG
TGACCTTCGAGGGGGGGGCTTGGGACGAGGTGACCGACGGAATCAAAGCG
AAAGCGGGTACTCCGGACAGACAACATGGATACAGAACTTCTGTCGCACG
CCTGGAAACGAGTTTTTTGCCGAGGTTCCAGAAAGCTTCATTCGCGAGAG
CATGAATCTCATCGACATCGGAAGGGGAGTAGAGATACCCAACATCAAGG
AGGCGCTTGGCGTCCTATTGGGAGAAACGTTCCAGAAAGCTTCATTCGCG
AGAGCATGAATCTCATCGACATCGGAAGGGGAGTAGAGATACCCAACATC
AAGGAGGCGCTTGGCGTCCTATTGGGAGAAACCCGAGTTAGCACCAGCAT
ACACGGTGATGCTAGCCAGAAGGCGTCCATGGTACAGTCATCAGCGGCCC
TCTTATATGGCCTGTTACACGCAAGCCGAGTTAGCACCAGCATACACGGT
GATGCTAGCCAGAAGGCGTCCATGGTACAGTCATCAGCGGCCCTCTTATA
TGGCCTGTTACACGCAAGGTTTTTGGTGAGCCCGCAAGGCTTGAAAGTGG
CCCTGGAGAAGTTTTCCAAGGCCGACTACGGGAGATGCCCCAGGTTTTTG
GTGAGCCCGCAAGGCTTGAAAGTGGCCCTGGAGAAGTTTTCCAAGGCCGA
CTACGGGAGATGCCCCAGGGTTTTTTGCCAGGGGCAGGCGGTGCTGCCAG
TGGGAGAAACAGACAGGCCCATGCAGAGCTCGGTCAGGGGTTTTTTGCCA
GGGGCAGGCGGTGCTGCCAGTGGGAGAAACAGACAGGCCCATGCAGAGCT
CGGTCAGGGTGTTTTGTCCGCGCTGCGGGGACCTGTATTATCCTTCGGGC
TACGTGCGAGCATGCGACGGAGCCTTTTGGGGAACCACCCTTCCACACCT
CCTACTCCTGGGATGGCCAGAGCTGAAAACAGAGCCAAATGCGCAACGAT
ACGTGCCACGGGTGTACGGCTTCAGAGTCCACGCCGAAGCATCGCAGGTT
TCTCCCGCGAACGCTCGCGATCATACCACGAACAAAGGCAGAGCGAATGT
AGAGCATGGGGTGGCAGGGCCAGTGTAAGTGTTTTGTCCGCGCTGCGGGG
ACCTGTATTATCCTTCGGGCTACGTGCGAGCATGCGACGGAGCCTTTTGG
GGAACCACCCTTCCACACCTCCTACTCCTGGGATGGCCAGAGCTGAAAAC
AGAGCCAAATGCGCAACGATACGTGCCACGGGTGTACGGCTTCAGAGTCC
ACGCCGAAGCATCGCAGGTTTCTCCCGCGAACGCTCGCGATCATACCACG
AACAAAGGCAGAGCGAATGTAGAGCATGGGGTGGCAGGGCCAGTGTAA
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