mRNA_H-paniculata_contig1338.2112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1338.2112.1
Unique NamemRNA_H-paniculata_contig1338.2112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A6H5JAQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ0_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.750e-90
Identity = 149/229 (65.07%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:  226 ACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQT-ADANKHRSDGDIVSQLPPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPN-SRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIGQLM 906
            A +LL WRV  ++P           RW    AQ  A + + ++     +  P + VNTLVVLGSGGHTSEML+LT+ LSP+ Y PLCYVVASTDHTSA RIP++ L SGR R+ TIPRSREVGQSY+TS++TTL+AG++AA +V  +RP+LVLVNGPGTCIPVCV A ALR  GL  + SRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELL +YPR EY GQLM
Sbjct:   10 ALLLLAWRVWAIIP----------RRWRQWPAQQRAQSPQQQTSTSSSAGRPGRKVNTLVVLGSGGHTSEMLKLTSRLSPETYSPLCYVVASTDHTSADRIPKEGLMSGRSRVLTIPRSREVGQSYLTSVFTTLLAGLHAAVVVVTVRPDLVLVNGPGTCIPVCVAASALRFFGLGSSCSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLVKYPRAEYAGQLM 228
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: D7FX40_ECTSI (Beta(1,4)-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX40_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.950e-81
Identity = 126/165 (76.36%), Postives = 144/165 (87.27%), Query Frame = 1 
Query:  415 GGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPN-SRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIGQLM 906
            GGHTSEML+LT+ LSP+ Y PLCYVVASTDHTSA RIP++ L SGRCR+  IPRSREVGQSY+TS++TTL+A ++AA +V  +RP+LVLVNGPGTCIPVCV AFALR  GL  + SRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELL +YPR EY GQL+
Sbjct:    4 GGHTSEMLKLTSRLSPETYSPLCYVVASTDHTSADRIPKEGLMSGRCRVRAIPRSREVGQSYLTSVFTTLLAALHAAVVVVTVRPDLVLVNGPGTCIPVCVAAFALRFFGLGSSCSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLVKYPRAEYAGQLV 168
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A835YPL6_9STRA (Beta-N-acetylglucosaminyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.180e-58
Identity = 93/170 (54.71%), Postives = 127/170 (74.71%), Query Frame = 1 
Query:  397 LVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCR--ICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIGQ 900
            +VVLGSGGHT+EML+L       +Y PL YV+A+TDHTSA RIP  +   G     + T+PRSREVGQ + ++  TT VA +  A +VA +RP++++VNGPGTC+P+C   FAL+VV +RP ++ VF ESFCRV++LSL+G ++Y LADRF+VHWPEL  +YPR EY+G+
Sbjct:    1 MVVLGSGGHTTEMLKLLQGAPTDVYAPLHYVIAATDHTSADRIPHADAAPGSAATVVHTVPRSREVGQGWASTCATTAVAMLRCAWLVACVRPDVLIVNGPGTCVPICACVFALKVVAIRPRAKLVFVESFCRVETLSLTGWLLYPLADRFLVHWPELAAKYPRAEYVGR 170
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A485KR83_9STRA (Aste57867_10601 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR83_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.420e-56
Identity = 91/174 (52.30%), Postives = 126/174 (72.41%), Query Frame = 1 
Query:  376 PPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIG 897
            PP    TLVVLGSGGHT+EML+L   LS   Y PL +VVA+TDHTS ++    E K    R  +IPRSREVGQS++T++++T  A +Y+  +V   +P+++L NGPGTCIP+C     LR VG++ +S+ +FCESF RV+ LSLSG+++Y + D FVVHWP+L E+YPR +Y+G
Sbjct:    8 PPAPFRTLVVLGSGGHTTEMLKLIKRLSVTQYTPLAFVVAATDHTSEEKA-RMERKDEALRFFSIPRSREVGQSWITTIFSTAYAFLYSMWIVVHYQPDVLLCNGPGTCIPICAAVLLLRFVGIKTHSKILFCESFARVQRLSLSGKLLYPIVDEFVVHWPQLQEKYPRAKYLG 180
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A6G0XIK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIK9_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.110e-55
Identity = 105/225 (46.67%), Postives = 145/225 (64.44%), Query Frame = 1 
Query:  226 ACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQTADANKHRSDGDIVSQLPPK-TVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIG 897
            A VL VWR+  +LP  +RG+            QT  ++K          LPP  +V TLVVLGSGGHT+EML+L   LS   Y P  +VVA+TDHTS ++    E K    +  TIPRSREVGQS++T+++TT  + +Y+  +V R +P+L+L NGPGTCIP+C     LR +G+  NS+ +FCESF RV+ LS+SG+I+Y +AD F+VHW EL  +YP  +Y+G
Sbjct:   12 AAVLSVWRLRCILP--RRGK------------QTVPSSK----------LPPLVSVRTLVVLGSGGHTTEMLKLIKRLSTTRYTPFAFVVAATDHTSQEKA-RIERKGEELQFFTIPRSREVGQSWLTTVFTTAYSFLYSMWVVIRFQPDLLLCNGPGTCIPICAAVLLLRFLGIMTNSKILFCESFARVQRLSMSGKILYPIADEFIVHWSELQAQYPHAKYLG 211
[Close]
BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: W4G189_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G189_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.250e-54
Identity = 99/229 (43.23%), Postives = 144/229 (62.88%), Query Frame = 1 
Query:  211 ILELVACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQTADANKHRSDGDIVSQLPPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIG 897
            ++ +VA  + +WRV  +LP       R+ A  ++L           S G+  S     T  TLVVLGSGGHT+EML+L   LS   Y PL +VVA++DHTS ++   +    G     TIPRSREVGQS+V++++TT  + +Y+  +V   +P++++ NGPGTCIP+C      R +G +P+S+ +FCESF RV+ LSLSGR++Y +AD FVVHWP+L  +YP   Y+G
Sbjct:    7 VVAVVAVAVCLWRVWCILPR------RNGATSSSLLHTPGKP----SSGNQTSTTSGSTARTLVVLGSGGHTTEMLKLIKRLSMDTYAPLAFVVAASDHTSEEKARVERKDDGPLHFYTIPRSREVGQSWVSTVFTTAYSFLYSVWVVFHFQPDVLVCNGPGTCIPICAALLVRRFLGHQPSSKLIFCESFARVQRLSLSGRLLYHVADAFVVHWPQLQAKYPHATYLG 225
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A024TZ72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZ72_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.070e-53
Identity = 104/239 (43.51%), Postives = 151/239 (63.18%), Query Frame = 1 
Query:  181 QLWDVVVWVAILELVACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQTADANKHRSDGDIVSQLPPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIG 897
            QL  +V  VA++  V     +WR+  +LP  +R  G  AA  + L   +  +      G   +    K + TLVVLGSGGHT+EML+L   LS + Y PL +VVA++DHTS ++    E K    ++ TIPRSREVGQS+ ++++T++ + +Y+  +V   +P+L+L NGPGTCIP+CV     R +GL   ++ +FCESF RV+ LSLSGRI+Y +AD FVVHWP+L  +YP   Y+G
Sbjct:    3 QLGTIVTAVAVVVAV----FLWRIWCMLP--RRRHGNSAA--SPLLGTSPFSGNQTLHGGATA----KKIRTLVVLGSGGHTTEMLKLIKRLSVEQYTPLAFVVAASDHTSEEKA-RMERKGSALQVYTIPRSREVGQSWTSTVFTSMHSLLYSIAVVFHFQPDLLLCNGPGTCIPICVALLLRRFLGLDTTAKLIFCESFARVQRLSLSGRILYHVADAFVVHWPQLQAKYPHATYLG 228
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: K3WS47_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS47_GLOUD)

HSP 1 Score: 186 bits (473), Expect = 1.640e-52
Identity = 100/228 (43.86%), Postives = 140/228 (61.40%), Query Frame = 1 
Query:  214 LELVACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQTADANKHRSDGDIVSQLPPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIG 897
            L LVA +L +W V  V+P+  +      A +         A+K R +          TV T+VVLGSGGHT+E+L+L   L+  +Y P+ +VVA TD TS ++       S       IPRSREVGQS+ +S+WTTL A  +  T V   RP+LVL NGPGTCIP+       R +G++ +S+ +FCESF RV+SLSLSG+I+Y +AD FV+HWP+L  +YP+T ++G
Sbjct:   16 LLLVAIILRIWSV--VVPHRVKS---SLAAYKVSPPMVTSADKTRENA---------TVRTMVVLGSGGHTTEILKLMKRLNRSVYTPIAFVVAETDKTSQEKTALDWKPSAADEFVIIPRSREVGQSWSSSVWTTLRAFRFCLTEVYTHRPQLVLCNGPGTCIPIVATVLLFRFLGIQTHSKVIFCESFARVQSLSLSGKILYYVADEFVIHWPQLQAKYPKTRHLG 229
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BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A067C002_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C002_SAPPC)

HSP 1 Score: 185 bits (470), Expect = 2.600e-52
Identity = 94/174 (54.02%), Postives = 122/174 (70.11%), Query Frame = 1 
Query:  385 TVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSA-KRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIGQL 903
            T  TLVVLGSGGHT+EML L   LSP  Y PL YVVA+TDHTS  K I E++          IPRSREVGQS+VT++++T  A V+   +V R +P+L+L NGPGTCIP+C     LR  GLR +++ +FCESF RV+ LSLSG+++Y +AD FVVHWP+L  +Y  + Y+G L
Sbjct:   42 TFRTLVVLGSGGHTTEMLALIKRLSPTRYAPLAYVVAATDHTSREKAIAERQASPDA--FFEIPRSREVGQSWVTTIFSTAKAFVHCMQIVFRYQPDLLLCNGPGTCIPLCAAVLLLRFFGLRTDAKILFCESFARVQRLSLSGKLLYYVADEFVVHWPQLQAQYKASRYLGVL 213
[Close]
BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Match: A0A7S2HDE1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDE1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 6.970e-52
Identity = 95/176 (53.98%), Postives = 117/176 (66.48%), Query Frame = 1 
Query:  376 PPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIPLCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLVAGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCESFCRVKSLSLSGRIMY--LLADRFVVHWPELLERYPRTEYIG 897
            P   V TLVVLGSGGHT+EML L   L  Q Y PL YV+A TDHTS  ++    L         IPRSREVG+S++ SL  T  A  +A  +V R RP+L++ NGPGTC+P+C+ AF LR   L  + R VFCESFCRVK+LSL+G+I Y   + DRFVV WP L +R+PR EYIG
Sbjct:   36 PDCKVRTLVVLGSGGHTTEMLHLLTRLPKQRYHPLFYVLADTDHTSKAKVEASPLAPQATEYIRIPRSREVGESWIRSLMKTAYACAWAVAIVIRKRPQLIICNGPGTCLPICLAAFGLRTFFLS-DVRIVFCESFCRVKTLSLTGKIFYNFRVVDRFVVQWPALQKRFPRAEYIG 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1338.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAQ0_9PHAE2.750e-9065.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX40_ECTSI2.950e-8176.36Beta(1,4)-N-acetylglucosaminyltransferase n=1 Tax=... [more]
A0A835YPL6_9STRA1.180e-5854.71Beta-N-acetylglucosaminyltransferase n=1 Tax=Tribo... [more]
A0A485KR83_9STRA1.420e-5652.30Aste57867_10601 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XIK9_9STRA4.110e-5546.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4G189_9STRA1.250e-5443.23Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TZ72_9STRA2.070e-5343.51Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K3WS47_GLOUD1.640e-5243.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067C002_SAPPC2.600e-5254.02Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2HDE1_9STRA6.970e-5253.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1338contigH-paniculata_contig1338:6620..12031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.5
Seed ortholog evalue3.2e-66
Seed eggNOG ortholog2880.D7FX40
Preferred nameALG14
KEGG koko:K01363,ko:K07441
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,ko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map00510,map00513,map01100,map04140,map04142,map04210,map04612,map04621,map04924
KEGG ModuleM00055
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0007154,GO:0007267,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0023052,GO:0030154,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043495,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0048869,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3339@1,KOG3339@2759
EC2.4.1.141,3.4.22.1
COG Functional cat.S
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01002,ko01003,ko03110,ko04147
Exons4
Model size1477
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1338.2112.1prot_H-paniculata_contig1338.2112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1338 6797..11463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.541839-UTR-H-paniculata_contig1338:6619..67961622929060.541839-UTR-H-paniculata_contig1338:6619..6796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1338 6620..6796 +
1691480716.234781-UTR-H-paniculata_contig1338:6619..67961691480716.234781-UTR-H-paniculata_contig1338:6619..6796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1338 6620..6796 +
1622929060.6163733-UTR-H-paniculata_contig1338:11463..120311622929060.6163733-UTR-H-paniculata_contig1338:11463..12031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1338 11464..12031 +
1691480716.2845404-UTR-H-paniculata_contig1338:11463..120311691480716.2845404-UTR-H-paniculata_contig1338:11463..12031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1338 11464..12031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.5608473-CDS-H-paniculata_contig1338:6796..70341622929060.5608473-CDS-H-paniculata_contig1338:6796..7034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 6797..7034 +
1691480716.2472637-CDS-H-paniculata_contig1338:6796..70341691480716.2472637-CDS-H-paniculata_contig1338:6796..7034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 6797..7034 +
1622929060.5741265-CDS-H-paniculata_contig1338:8757..89271622929060.5741265-CDS-H-paniculata_contig1338:8757..8927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 8758..8927 +
1691480716.2574563-CDS-H-paniculata_contig1338:8757..89271691480716.2574563-CDS-H-paniculata_contig1338:8757..8927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 8758..8927 +
1622929060.58823-CDS-H-paniculata_contig1338:10724..108331622929060.58823-CDS-H-paniculata_contig1338:10724..10833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 10725..10833 +
1691480716.2694776-CDS-H-paniculata_contig1338:10724..108331691480716.2694776-CDS-H-paniculata_contig1338:10724..10833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 10725..10833 +
1622929060.600229-CDS-H-paniculata_contig1338:11248..114631622929060.600229-CDS-H-paniculata_contig1338:11248..11463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 11249..11463 +
1691480716.2774668-CDS-H-paniculata_contig1338:11248..114631691480716.2774668-CDS-H-paniculata_contig1338:11248..11463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1338 11249..11463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1338.2112.1

>prot_H-paniculata_contig1338.2112.1 ID=prot_H-paniculata_contig1338.2112.1|Name=mRNA_H-paniculata_contig1338.2112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MQLWDVVVWVAILELVACVLLVWRVCVVLPYWKRGRGRDAARWNTLQAQT
ADANKHRSDGDIVSQLPPKTVNTLVVLGSGGHTSEMLRLTAHLSPQIYIP
LCYVVASTDHTSAKRIPEKELKSGRCRICTIPRSREVGQSYVTSLWTTLV
AGVYAATMVARIRPELVLVNGPGTCIPVCVVAFALRVVGLRPNSRTVFCE
SFCRVKSLSLSGRIMYLLADRFVVHWPELLERYPRTEYIGQLM*
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mRNA from alignment at H-paniculata_contig1338:6620..12031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1338.2112.1 ID=mRNA_H-paniculata_contig1338.2112.1|Name=mRNA_H-paniculata_contig1338.2112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5412bp|location=Sequence derived from alignment at H-paniculata_contig1338:6620..12031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGATCATTGCATTTTCGCGTAAAACGTGGTCATGTTCTATCATTGCC
GTGCTAAACCTAGTTATATTCCGATTTAAATCCTCCACGGATGAGTTGAG
ACTTGCGGATTTGGCTCTCTCTCTCTCGTTCTCCCTACCTCTCTGTCTCT
ATCTCTAGCGATCTTGAGTAGATTACTATGCAGCTTTGGGATGTAGTGGT
ATGGGTAGCGATACTCGAATTAGTTGCGTGTGTGCTGTTGGTGTGGCGCG
TGTGTGTGGTGCTCCCATATTGGAAACGGGGACGAGGAAGAGATGCGGCG
CGATGGAACACGCTTCAGGCACAAACCGCGGATGCCAACAAACACCGCAG
TGACGGGGATATTGTCTCACAACTACCGCCAAAGACGGTGAATACCCTAG
TGGTGCTCGGTTCAGGTGAGATTAGGTGTATAGTGTGTTTCGCTTCTGTA
AAGCTGTTGTGCTTCTGCTCACACGGTCTTCGTCCTCACGGAGGCTCGCT
TATGTAGAATTTTTCAGTAGGTAACGCAAGGTACCACCCCGCCACAACTC
TGCCCCGAAATGGTTGTGATCAGTAGCATGTTGAACTGGGATATCTTTCA
GCCCAACGCCCGTGGACAGTGGGGCAATTCCCTTTCCTCCCTTCTTCGCG
CTTTACAGGGGTAATCGGATATTCACTGAACTCCTCTAGCGCCAGAACCT
GCTTCAGAACAAGAGAGGAACTTGTCGACTGATGTCGAGTGCTGCGGACG
TTGTTGACAGAACTATACCAACTTGTCTCTACTGCTGTATCCATGGGGAC
GTATCGCCTGCACTTGCGTGTCTGAGTGTCTAAGCAGGGGCGGCTCCCTA
TCCCCATAAAGTCGTCGGTCATAAGTCAAGACGTGAGGTGGGTTGCGAGA
AAATAACATTCTCATTTTTTAAATCCTTGTCGAGCCATCTCCGTAGTAGA
ATTCGTCAACTTCGGACTCCATTTTTTTTGGGGGGGGGGAAGACAGCTTC
AGGTACACTTCGGTCCTTGCTGGCCACTTGGAGGTACAGAGTGGTACAGT
CATACTCCGGCCTGCTAAGTGGCCAAGACATCACCATACCTCGAAGCGAC
CACATTGCCAACAGGTGTACCTGGAAATGTCTACTATTCCACCCAGCTTG
TACCTGAAAGTAGGACATCTAAACCTTTTTTCTTTTTTTTAACTCCCCGA
AGGCTAAGGCAAAACCTATATCCGATGCTTCCATTCTTGAGTATTTCTAC
CGAAGTATTTCTACATTTCCTTTAACAGAACAGAGTGACATCTAAACCTG
GACGAAATCATACCTAAACTTGGCGAGAAACGACGGGAAAAGATTCCATG
AGCAGTGACGGATATTCACACCAGCCGCCATTTCTTCCAATCGTCCAAGA
AGGCTCAGGAAAGAGCTCCCATTTCGTGTTTAGCTTTGTTTTTGGTTCCA
ATCTCCTGGTGAACACGTCGCGCCGGCAGCTGACAACTCCCCCAAACAAA
CGCCGACTCACCCATCATGCGCTGGCAGTTTGCTGCCCTGAACTGTTCTG
TTCCTCCAGAGAGTTCAGTACCGCGTTGAGAAGAAAACACAGCGAACGGC
ACAGCAGTATACTATACTGTGTGCCTCGAGTGTCTTCAAATATACGCAAT
GAGACCCTCACATTCTTACCCTATCGTCTCTTTAACCGTGAGGAGGGAGG
GTGGTAAAAACGAAAACAATAAAGGGGGGGGGGGGGGTAGAACGAAATCG
CAACAAGAACAGGAAGCACTCTCGACCTAATCCGCCCGCCTGTTGCACTG
TTGTGCTAATTTTGAATGTTCGGCAATGCATCGCACTACACTGGTGGGTT
AAATTGCCAATTCGATAGCACTACGTAATCGGATTTTCGGGTGCTCTCAT
GGTACTAGTTGAGTAAATACAAACGAGCACACTTCACACTATGGTTAGAG
GGGCCTGCTTCTAACTACTGTTAGGGTATACTCAGAGAATTGTAAAGTCC
GTTTGCTTGAAGGGCATTATTTATTTCGCAATCTCTTGAAGTTATCCAAC
ACCTGCCTCTCCCCCGGACTCATCCCTACCTCAACGCCAACAAATTGCTT
CGTCACTTCGTGTCGCTAACGAATCGCACCGCTTGCAGGCGGGCATACAT
CGGAGATGCTCAGGCTCACTGCACATCTTTCGCCGCAGATCTACATCCCT
CTCTGCTACGTCGTGGCCAGCACGGACCATACGAGCGCGAAGCGAATCCC
TGAGAAAGAGCTAAAGTCCGGACGGTGTCGAATCTGTACGATACCTCGCA
GTCGAGAGGCAAGACGGAGTTTCGATAGCATGCAGCGACTTTTGAGAACC
CTCTCACTACGCACTTTGTGAAGTTTATGTCATTATTATTTTAGTTCAAG
AAAGTTGAAAAAAGTAAACATTCACCGTTTTTTTACGATGTAATGAGGCC
TTTGAGCCCTTTTTTTATCTCTTTATTCAAGCCGGAAAGGCCTAGGTCTG
GAGAATGACGAAATTGATTTATGTTTTCTTGGATAAGTTGTTGCAGAATG
TTTTTTGTTTTAATAATCACCACACGGCCGTATTTCACCCCTGCTTAACG
TTTGTTTCCCCGATGTGCCTCACGGTTACAGCCTAATATACGAAGTGTAC
GGATCTCTAGCCTTACCACGCAAAGAGATGATATCTCCACCGTGGATAGA
AACGTCCCTTCGCCATTCCCCCGCCATTCCTCAACTCCCCGGCCGTAGTC
CTTCCCCTGGCAGTAGCCAATCAAGCACCTGCGGAAACGTCATTTATACA
ACGACAAACAAAATGATGAGTATCCATGTATAGCTTCCTACAGTGTTTTG
GTCACGCTTGCGAACGCCATAAAAGTATATTGGAATCCTTGTCGGGCGAC
TGAAACGGCAAGACGTGCTAGGTATATTGGATGATTGGAACGAGAAGCAG
CTAATGAGTATCGAGGTACCATAGCTGTCATATTCAAGAACATATGACGC
AATACGACACCCCGGGTGATGACGTACTCCGCACGCTTTTATTTCCTCAA
AGAAGCAAGGCCCTGAACTGTCAAAAGAACGCGCGTTCATTTAATGAAAG
ATCTCAACAAGATCTTCCCAACAACGCAACTTCCGGTCCCGCAAGTCCCA
AGCCCACCCACGCTGTTTGTAAGAAAATTGAGTTTGAAAGGGTTCATCAC
TGGCGGTGATGAAACCCTGTCAACTGCGGAACATCTCGTTGTCTCCCTCT
GTCTGTCTCTCCATGTCTCTCGCAGCGAACCTATTCATGGTTTTGATTAT
TGGGCGTTGGAGTCGTTTATTAAACTGGACAGGTTGCGAAGAAACCGCGC
TCCCATCGTACAGCTCTACCGAATGCTCACATGCTTGACCGTCGCAAACG
TTTTTATCGGACGAAGTCGATCCCCACGTGCCATGCTCTTGGCGAGGCCG
ATCGTTTCATTTACGCAGCACAACAAGGTATACGAGGGCCACTTATCTAT
CCTTTTCCCGCGTTTCTGTTCAAATTCGGCTGCAAACGAACTGGCAAAGT
GATTATTTTCCCCCCATTGATGGATGAAACCAAGAAAATATGTGATTTCA
TCCTTCGCGACAGCATTGACGGTGCTTCATACTGTACTATCCCACTAGGC
CATGCTCAACGATCCCCGCATCCGAGATATCAAACCAAGTCGTCCGCAAA
TCAAACGGTGAGGGCAGAAATTGCCCCGAGCGTTACAGGTTGTTGGTGTT
TTAAACGGGGTTGATGACGTTTTCCCAACCGATTTGTTTTTGAAAACGAC
GGAGCTCGTGATACCGAAAGTTGCGTGTCGTACCATACATCTTGTTCGGA
AAACGCGATCTTGTAAACAATGAAGAAGGTTTTTATCTTTTCGAGCGAAA
TCGAGTTTGAAAGCTCGTGTGCGGGGTGCTATGAATAGTCTTCTGGGCTA
CGGTACAGGCGTAAAAGTCAACGAGAACCAACCCCAAGCCTCCTCTGGCC
TGTGTTGATCTCTTTTGATGCGAGGGCGATTGGTTTTCGTGTGTAATAAC
GCACTATAAGTTTTCTTCCTGTTTCTGACTTTTTTCCCCCTGGTACTGCG
AGCAGGTGGGTCAATCGTACGTGACGTCGCTGTGGACTACACTCGTTGCT
GGCGTGTATGCGGCGACGATGGTTGCAAGAATTCGCCCGGAACTTGTGTT
GGTGAACGGCCCAGGTGACGATGAACCAAAGTGCTCTTGCATTATAGTGC
AGTACAATACCTGGGCAAAAAACCCAAAAATGTCTCGGTACGATGCGGAT
TTTTGAAGACACAAGTAACCTGCGTAGAGGAGCCTCCCAACAGCCCTGTA
TTATTCGGAGCTGATACATCGAGTGTGGGGGCAGGCACATGTTGCATGTT
TCAAATCGAAACATGAAACAATCGCACTGTTGTTGCAGATCCTAAACAAT
AATCATGTAATTAGTAGAAATTATTGTGTCGCGTACCTCGAATTTTAGTT
TCCCTCACAAAAAAACTCAAAATGGCCCATCTCGTTTTCGTCTGACTCTC
TGATCACACCACCCTTCAGCTCTACTGTACTTGAAAACACCCCCCACCGC
GTCCTACGGTTTCGTTTACTCCGCTGCAGGGACGTGTATTCCGGTGTGTG
TCGTGGCCTTCGCCCTTCGGGTCGTAGGCCTGCGACCGAACTCCCGCACT
GTGTTTTGTGAGAGCTTCTGCAGGGTCAAGTCTCTGAGCCTGAGTGGTCG
CATAATGTACCTCTTGGCGGATCGTTTCGTGGTGCACTGGCCCGAGCTTT
TGGAACGATATCCTCGCACAGAGTACATAGGCCAACTGATGTAGTTGTCA
CCGCCTCTGTTGCTGATACTTACTGCCATTACTTCTGTTGCTGTGGCAAT
AGGTTTTCGGAATAATCCTGTACATATATTTCTCAGAGTATTAACTCCAG
AAAAGCTTGTCGAAATATGCACGTTGAGGGTCGTCGTCGTCGTCCTCATC
GTTCTGGAACAGTTTCAAAGAATCTGTATTCAAGGACCTTGTAGTAATGA
CTCTTGACGGAAATTTGTGCCTACAGCTTTTGTGGGCACAGGGAGCCGTC
GTACGTGGATCAAGGACGAAGCAGGAACTGTACGGGTGTAGCTATGACTC
TGACTACAATAGTGTAAATTTGATGGTTTTCGGAATTTGACGTTCTCTTG
TGCCGATAATTCAAGTTTTGTCATTTGTTATGTATGCATGGCGGTTCGTC
TTGTTTTTGTTTTGTTTATTTACCTTCAGCGTCAGTAATAGCATGTGTGT
GACAACACACTGTAGCTGCAGGAAAATCATCTCAATTATCCGGAGTGATG
ACCTGTTTTTGTTTTTGTCTAAACTCGATTATATTAAATATCAAGGAGCG
GTTGCATGACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1338:6620..12031+

>mRNA_H-paniculata_contig1338.2112.1 ID=mRNA_H-paniculata_contig1338.2112.1|Name=mRNA_H-paniculata_contig1338.2112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig1338:6620..12031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTTTGGGATGTAGTGGTATGGGTAGCGATACTCGAATTAGTTGC
GTGTGTGCTGTTGGTGTGGCGCGTGTGTGTGGTGCTCCCATATTGGAAAC
GGGGACGAGGAAGAGATGCGGCGCGATGGAACACGCTTCAGGCACAAACC
GCGGATGCCAACAAACACCGCAGTGACGGGGATATTGTCTCACAACTACC
GCCAAAGACGGTGAATACCCTAGTGGTGCTCGGTTCAGATGCAGCTTTGG
GATGTAGTGGTATGGGTAGCGATACTCGAATTAGTTGCGTGTGTGCTGTT
GGTGTGGCGCGTGTGTGTGGTGCTCCCATATTGGAAACGGGGACGAGGAA
GAGATGCGGCGCGATGGAACACGCTTCAGGCACAAACCGCGGATGCCAAC
AAACACCGCAGTGACGGGGATATTGTCTCACAACTACCGCCAAAGACGGT
GAATACCCTAGTGGTGCTCGGTTCAGGCGGGCATACATCGGAGATGCTCA
GGCTCACTGCACATCTTTCGCCGCAGATCTACATCCCTCTCTGCTACGTC
GTGGCCAGCACGGACCATACGAGCGCGAAGCGAATCCCTGAGAAAGAGCT
AAAGTCCGGACGGTGTCGAATCTGTACGATACCTCGCAGTCGAGAGGCGG
GCATACATCGGAGATGCTCAGGCTCACTGCACATCTTTCGCCGCAGATCT
ACATCCCTCTCTGCTACGTCGTGGCCAGCACGGACCATACGAGCGCGAAG
CGAATCCCTGAGAAAGAGCTAAAGTCCGGACGGTGTCGAATCTGTACGAT
ACCTCGCAGTCGAGAGGTGGGTCAATCGTACGTGACGTCGCTGTGGACTA
CACTCGTTGCTGGCGTGTATGCGGCGACGATGGTTGCAAGAATTCGCCCG
GAACTTGTGTTGGTGAACGGCCCAGGTGGGTCAATCGTACGTGACGTCGC
TGTGGACTACACTCGTTGCTGGCGTGTATGCGGCGACGATGGTTGCAAGA
ATTCGCCCGGAACTTGTGTTGGTGAACGGCCCAGGGACGTGTATTCCGGT
GTGTGTCGTGGCCTTCGCCCTTCGGGTCGTAGGCCTGCGACCGAACTCCC
GCACTGTGTTTTGTGAGAGCTTCTGCAGGGTCAAGTCTCTGAGCCTGAGT
GGTCGCATAATGTACCTCTTGGCGGATCGTTTCGTGGTGCACTGGCCCGA
GCTTTTGGAACGATATCCTCGCACAGAGTACATAGGCCAACTGATGTAGG
GACGTGTATTCCGGTGTGTGTCGTGGCCTTCGCCCTTCGGGTCGTAGGCC
TGCGACCGAACTCCCGCACTGTGTTTTGTGAGAGCTTCTGCAGGGTCAAG
TCTCTGAGCCTGAGTGGTCGCATAATGTACCTCTTGGCGGATCGTTTCGT
GGTGCACTGGCCCGAGCTTTTGGAACGATATCCTCGCACAGAGTACATAG
GCCAACTGATGTAG
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