mRNA_H-paniculata_contig1338.2113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.300e-23 Identity = 64/117 (54.70%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 37 VGGVGLREGDEELAKGGGCDEEEVICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCKQVVEPPARSGRPKSSSSANDLINSANGGVSGAGPAGRLSSRNVRFWLRLH 387 VGG G +G E A G G EEE CAICLCEEE+GQ LRVLPCGHFFHAGCVD+WL++SPTCPFCKQ VEPP S+ S L+ S+ + R++R WLR H Sbjct: 132 VGGPG--KGTEPAAAGEGV-EEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPP-------STESKAGLVGSS-----------AVPVRSLRRWLRNH 227
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.470e-23 Identity = 67/128 (52.34%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 16 GGRVDGEVG-GV-GLREGDEELAKGGGCDEEEVICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCKQVVEPPARSGRPKSSSSANDLINSANGGVSGAGPAGRLSS--RNVRFWLRLH 387 GG +D E G GV G +G E G G EEE +CAICLCEEE+GQ LRVLPCGHFFHAGCVD+WL++SPTCPFCKQ VEPP+ + GP G ++ R+VR WLR H Sbjct: 323 GGDMDVEKGWGVSGPGKGTEPAVAGEGV-EEEAMCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESK--------------------VGPLGSSAAPFRSVRRWLRNH 429
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU) HSP 1 Score: 72.8 bits (177), Expect = 6.810e-12 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 109 ICAICLCEEEEGQALRVLP-CGHFFHAGCVDIWLSRSPTCPFCKQVVEPP 255 ICA+CLCE ++G+A+RVLP C H FHA C+D+WLS CP C+ +EPP Sbjct: 58 ICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPP 107
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A6P5SY84_PRUAV (RING-type E3 ubiquitin transferase n=3 Tax=Prunus TaxID=3754 RepID=A0A6P5SY84_PRUAV) HSP 1 Score: 72.8 bits (177), Expect = 1.410e-11 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 109 ICAICLCEEEEGQALRVLP-CGHFFHAGCVDIWLSRSPTCPFCKQVVEPP 255 ICA+CLCE ++G+A+RVLP C H FHA C+D+WLS CP C+ +EPP Sbjct: 88 ICAVCLCEFKDGEAIRVLPACMHLFHAECIDMWLSSHSNCPLCRTDIEPP 137
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU) HSP 1 Score: 72.8 bits (177), Expect = 1.410e-11 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 109 ICAICLCEEEEGQALRVLP-CGHFFHAGCVDIWLSRSPTCPFCKQVVEPP 255 ICA+CLCE ++G+A+RVLP C H FHA C+D+WLS CP C+ +EPP Sbjct: 88 ICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPP 137
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE) HSP 1 Score: 72.8 bits (177), Expect = 1.480e-11 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 109 ICAICLCEEEEGQALRVLP-CGHFFHAGCVDIWLSRSPTCPFCKQVVEPP 255 ICA+CLCE ++G+A+RVLP C H FHA C+D+WLS CP C+ +EPP Sbjct: 90 ICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPP 139
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A5J4YP56_PORPP (E3 ubiquitin protein ligase RIE1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YP56_PORPP) HSP 1 Score: 73.9 bits (180), Expect = 1.360e-10 Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 97 EEEVICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCKQVV 246 +E+ +CAICLCE E + LRVLPC H FH+ CVD WL RS CP CKQ + Sbjct: 243 DEDCLCAICLCEYEPDEKLRVLPCNHVFHSTCVDTWLGRSRQCPVCKQEI 292
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A1Y1VZL6_9FUNG (RING-type domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1VZL6_9FUNG) HSP 1 Score: 73.6 bits (179), Expect = 1.730e-10 Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 109 ICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCKQVVEPPARS 264 +CAICLCE E G LR+LPCGH H CVD WL + TCP CK+V P A S Sbjct: 283 MCAICLCEYENGDVLRLLPCGHHMHQSCVDEWLHINRTCPLCKRVATPGAES 334
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: A0A2G5BKA4_COERN (RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKA4_COERN) HSP 1 Score: 73.2 bits (178), Expect = 1.780e-10 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 Query: 91 CDEEEVICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCKQVV 246 CD E+ +CAICLCE ++G LR+LPC H H CVD WL + +CP CK+VV Sbjct: 250 CDPEDNVCAICLCEYDDGDILRLLPCNHHLHQKCVDEWLHINQSCPLCKRVV 301
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Match: R7TSL4_CAPTE (RING-type domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TSL4_CAPTE) HSP 1 Score: 66.6 bits (161), Expect = 1.960e-10 Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 Query: 100 EEVICAICLCEEEEGQALRVLPCGHFFHAGCVDIWLSRSPTCPFCK 237 +++ C +C+CE E+ Q LRVLPC H FHA CVD WL + TCP C+ Sbjct: 16 DQISCVVCMCEFEQRQLLRVLPCSHEFHAKCVDKWLKSNRTCPICR 61 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1338.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1338.2113.1 >prot_H-paniculata_contig1338.2113.1 ID=prot_H-paniculata_contig1338.2113.1|Name=mRNA_H-paniculata_contig1338.2113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp MSAEDGGRVDGEVGGVGLREGDEELAKGGGCDEEEVICAICLCEEEEGQAback to top mRNA from alignment at H-paniculata_contig1338:24049..25748- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1338.2113.1 ID=mRNA_H-paniculata_contig1338.2113.1|Name=mRNA_H-paniculata_contig1338.2113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1700bp|location=Sequence derived from alignment at H-paniculata_contig1338:24049..25748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1338:24049..25748- >mRNA_H-paniculata_contig1338.2113.1 ID=mRNA_H-paniculata_contig1338.2113.1|Name=mRNA_H-paniculata_contig1338.2113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig1338:24049..25748- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |