mRNA_H-paniculata_contig13378.2111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13378.2111.1
Unique NamemRNA_H-paniculata_contig13378.2111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13378.2111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13378contigH-paniculata_contig13378:5604..6074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size471
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.3612192-CDS-H-paniculata_contig13378:5603..59091622929060.3612192-CDS-H-paniculata_contig13378:5603..5909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13378 5604..5909 +
1691480716.1747434-CDS-H-paniculata_contig13378:5603..59091691480716.1747434-CDS-H-paniculata_contig13378:5603..5909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13378 5604..5909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.4148443-UTR-H-paniculata_contig13378:5909..60741622929060.4148443-UTR-H-paniculata_contig13378:5909..6074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13378 5910..6074 +
1691480716.1829474-UTR-H-paniculata_contig13378:5909..60741691480716.1829474-UTR-H-paniculata_contig13378:5909..6074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13378 5910..6074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13378.2111.1prot_H-paniculata_contig13378.2111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13378 5604..5909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13378.2111.1

>prot_H-paniculata_contig13378.2111.1 ID=prot_H-paniculata_contig13378.2111.1|Name=mRNA_H-paniculata_contig13378.2111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
YSQQVYLILILQVSVLYCLKYAVQQQFLRHVNLNYTSFRALFGVAVHTPL
SAQGTAVCTNTVALLSAVLCAPLFVRFVTTAVCTVHTAAVRLCTAVRTVQ
Q*
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mRNA from alignment at H-paniculata_contig13378:5604..6074+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13378.2111.1 ID=mRNA_H-paniculata_contig13378.2111.1|Name=mRNA_H-paniculata_contig13378.2111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig13378:5604..6074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGTCAGCAAGTTTATTTAATATTGATATTACAAGTCTCTGTTTTGTA
TTGCTTAAAGTATGCTGTACAGCAGCAGTTTTTGCGGCATGTTAATTTGA
ATTATACGTCTTTTCGCGCCCTTTTCGGTGTTGCTGTTCATACACCTCTG
AGTGCACAAGGTACTGCTGTCTGTACGAACACGGTTGCACTGCTGTCTGC
TGTACTGTGCGCACCGCTGTTCGTACGGTTCGTAACCACTGCCGTCTGTA
CGGTGCACACTGCTGCTGTACGGTTGTGCACTGCTGTGCGTACCGTACAA
CAGTGAGTTCGCCGTCTCCCAAATCCTCACCAATGTACCCACGGCGATAA
CGCTATTATGCATGGCGCCGCATGCGCATTTTCTTCCAAGGCTGTACGCT
GTTAAATTTCCACACCCTGGACAACTATGTTAGTTGGTAGTTGTGACTAA
GGAAACTGCTGGTTCAGAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig13378:5604..6074+

>mRNA_H-paniculata_contig13378.2111.1 ID=mRNA_H-paniculata_contig13378.2111.1|Name=mRNA_H-paniculata_contig13378.2111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig13378:5604..6074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGTCAGCAAGTTTATTTAATATTGATATTACAAGTCTCTGTTTTGTA
TTGCTTAAAGTATGCTGTACAGCAGCAGTTTTTGCGGCATGTTAATTTGA
ATTATACGTCTTTTCGCGCCCTTTTCGGTGTTGCTGTTCATACACCTCTG
AGTGCACAAGGTACTGCTGTCTGTACGAACACGGTTGCACTGCTGTCTGC
TGTACTGTGCGCACCGCTGTTCGTACGGTTCGTAACCACTGCCGTCTGTA
CGGTGCACACTGCTGCTGTACGGTTGTGCACTGCTGTGCGTACCGTACAA
CAGTGATACAGTCAGCAAGTTTATTTAATATTGATATTACAAGTCTCTGT
TTTGTATTGCTTAAAGTATGCTGTACAGCAGCAGTTTTTGCGGCATGTTA
ATTTGAATTATACGTCTTTTCGCGCCCTTTTCGGTGTTGCTGTTCATACA
CCTCTGAGTGCACAAGGTACTGCTGTCTGTACGAACACGGTTGCACTGCT
GTCTGCTGTACTGTGCGCACCGCTGTTCGTACGGTTCGTAACCACTGCCG
TCTGTACGGTGCACACTGCTGCTGTACGGTTGTGCACTGCTGTGCGTACC
GTACAACAGTGA
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