mRNA_H-paniculata_contig13373.2110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13373.2110.1
Unique NamemRNA_H-paniculata_contig13373.2110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: UPI001F5D458B (E3 ubiquitin-protein ligase XB3-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D458B)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-7
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   25 DDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADV-RFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVDVM--SW---------DDNGMTTLQIA 351
            D  +P+H+AA  G  + LS  L  GA  +AVD +K +PL L A  G++G V  LL+AGA++  F  ++        A +  VD +   L       +  SW         DDNG T L +A
Sbjct:   46 DRLSPLHIAAANGRLEALSMFLDRGAQPDAVDRHKQTPLMLAAMHGKIGCVLKLLQAGANILMFDSVNARTCLHHAAYYGHVDCLDAILCAAQTTAVADSWGYARFMNVRDDNGATPLHLA 166          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: T1MVB2_TRIUA (RING-type domain-containing protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1MVB2_TRIUA)

HSP 1 Score: 55.1 bits (131), Expect = 2.010e-6
Identity = 40/121 (33.06%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   25 DDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADV-RFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVDVM--SW---------DDNGMTTLQIA 351
            D  +P+H+AA  G  + LS  L  GA ++AVD +K +PL L A  G++G V  LL+AGA++  F  +         A +  VD +   L       +  SW         DD+G T L +A
Sbjct:   38 DRLSPLHIAAANGRLEALSMFLDRGAQLDAVDRHKQTPLMLAAMHGKIGCVVKLLQAGANILMFDSVHARTCLHHAAYYGHVDCLDAILSTARTTPVAGSWGFARFVNVRDDHGATPLHLA 158          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A5J9SGG2_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SGG2_9POAL)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-6
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    4 PVDCEIEDDQAPIHLAAMLGHEKTLSSLLMMGADVNAV--DI-YKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDV 273
            PVD  I     P+HLAA  GH++ +  LL  GAD N V  D  + ++PL +  C   L  VK+L++AGADV  K ++G  +        F D+
Sbjct:  161 PVD-PINHRGTPLHLAAAKGHDQVVKILLEHGADPNRVINDFPHLLAPLMMACCGQSLKCVKLLVQAGADVNVKSMNGQTVLMSAIDDGFTDI 252          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A3B5XTL1_WHEAT (RING-type domain-containing protein n=17 Tax=Triticeae TaxID=147389 RepID=A0A3B5XTL1_WHEAT)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-6
Identity = 40/121 (33.06%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   25 DDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADV-RFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVDVM--SW---------DDNGMTTLQIA 351
            D  +P+H+AA  G  + LS  L  GA ++AVD +K +PL L A  G++G V  LL+AGA++  F  +         A +  VD +   L       +  SW         DD+G T L +A
Sbjct:   46 DRLSPLHIAAANGRLEALSMFLDRGAQLDAVDRHKQTPLMLAAMHGKIGCVVKLLQAGANILMFDSVHARTCLHHAAYYGHVDCLDAILSTARTTPVAGSWGFARFVNVRDDHGATPLHLA 166          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A5J5DCB0_9PERO (SOCS box domain-containing protein n=2 Tax=Etheostoma spectabile TaxID=54343 RepID=A0A5J5DCB0_9PERO)

HSP 1 Score: 55.1 bits (131), Expect = 2.430e-6
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   28 DQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVD 306
            ++  +H +A LG E  +  LL  GA+ NA DI K +PL L A  G L  V+VLL+ GA V  +   G  LF   A       ++  L+EYG D
Sbjct:  183 NRTALHESAFLGLENFVYLLLESGANPNACDIKKKTPLALAAQNGHLNVVEVLLQKGAHVWCESESGTILFDAAASGN--PDIISLLLEYGAD 273          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A5Q4BHA3_9PEZI (Ankyrin-1 n=3 Tax=Colletotrichum destructivum species complex TaxID=2707350 RepID=A0A5Q4BHA3_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 3.270e-6
Identity = 35/109 (32.11%), Postives = 51/109 (46.79%), Query Frame = 1
Query:   16 EIEDDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVDVMSWDDNGMTTL 342
            ++E    P+H AAM+    +   LL  GAD N  ++   +PL +   +G L   ++L+E GADV  + IDG  L    A       +   LM  G+D    D  G T L
Sbjct: 1449 DLETSDTPLHGAAMVNCVDSARRLLDHGADPNLCNLNSFTPLTVAVRRGHLEMAQLLVERGADVHARDIDGMSLLNACADASEHPEMFIWLMSLGLDPCRPDGTGYTPL 1557          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A1I8MD57_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MD57_MUSDO)

HSP 1 Score: 54.3 bits (129), Expect = 3.600e-6
Identity = 29/109 (26.61%), Postives = 53/109 (48.62%), Query Frame = 1
Query:   25 DDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVDVMSWDDNGMTTLQIA 351
            +++ P+H A   G       LL   AD+ A D+Y ++P  L     +   +K  LE GA+   +   GW L  R  + +    ++K +M++G D+ + D   +T + +A
Sbjct:  177 NNRTPLHQAFYYGRVAVARMLLNKKADMEAKDMYGLTPCHLAVDANQGEILKFALENGANAESEDACGWTLLMRAVVMDSDFTILKLIMQFGADLENRDMRNLTCMDLA 285          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A7S0W7K8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7K8_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 3.810e-6
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   40 IHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFK----GIDGWPLFFRLAMHEFVDVVVKELMEYG 300
            +HLAAM+GHE  +S L + G D++       +P+ L A  G  G VK+L+ AG D+R K    G     L  R    + V+V+++EL   G
Sbjct:  269 VHLAAMMGHEDIVSFLALSGEDLDKQTEGGWTPMMLAAHAGLAGVVKILVNAGCDLRAKTNDEGHTALDLAERNGHKDIVEVILRELEMSG 359          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A669ENG4_ORENI (SOCS box domain-containing protein n=13 Tax=Percomorphaceae TaxID=1489872 RepID=A0A669ENG4_ORENI)

HSP 1 Score: 54.3 bits (129), Expect = 4.140e-6
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   28 DQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVD 306
            ++  +H +A LG E  +  LL  GA+ NA D+ K +PL L A  G L  V+VLL+ GA V  +   G  LF   A       ++  L+E+G D
Sbjct:  183 NRTALHESAFLGLENFVYLLLESGANPNACDVKKKTPLALAAQNGHLNVVEVLLQKGAQVWCESESGTILFDAAASGN--PDIISSLLEHGAD 273          
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Match: A0A6P7N0V8_BETSP (dynein heavy chain 12, axonemal isoform X1 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7N0V8_BETSP)

HSP 1 Score: 53.9 bits (128), Expect = 5.650e-6
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 1
Query:   40 IHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLTACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYGVD 306
            +H  A LG E  +  LL  GAD NA DI K +PL L A  G L  V+ LL+ GA V  +   G  LF   A       ++  L+E+G D
Sbjct:  187 LHECAFLGLENFVHLLLASGADPNACDIKKKTPLALAAQNGHLNVVEALLQKGAHVWCESESGTVLFEAAASGN--PDIISLLLEHGAD 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13373.2110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F5D458B3.330e-733.88E3 ubiquitin-protein ligase XB3-like n=2 Tax=Loliu... [more]
T1MVB2_TRIUA2.010e-633.06RING-type domain-containing protein n=1 Tax=Tritic... [more]
A0A5J9SGG2_9POAL2.150e-637.63Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
A0A3B5XTL1_WHEAT2.150e-633.06RING-type domain-containing protein n=17 Tax=Triti... [more]
A0A5J5DCB0_9PERO2.430e-638.71SOCS box domain-containing protein n=2 Tax=Etheost... [more]
A0A5Q4BHA3_9PEZI3.270e-632.11Ankyrin-1 n=3 Tax=Colletotrichum destructivum spec... [more]
A0A1I8MD57_MUSDO3.600e-626.61Uncharacterized protein n=1 Tax=Musca domestica Ta... [more]
A0A7S0W7K8_9CRYP3.810e-636.26Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A669ENG4_ORENI4.140e-636.56SOCS box domain-containing protein n=13 Tax=Percom... [more]
A0A6P7N0V8_BETSP5.650e-639.33dynein heavy chain 12, axonemal isoform X1 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13373contigH-paniculata_contig13373:5286..5636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog45285.XP_003644654.1
Preferred nameNAS6
KEGG koko:K06694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0019538,GO:0022607,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.to Saccharomyces cerevisiae NAS6 (YGR232W)
EggNOG OGs39VDP@33154,3NXYE@4751,3QQ59@4890,3RUNV@4891,3S0YW@4893,COG0666@1,KOG4412@2759
COG Functional cat.O
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929060.3056886-CDS-H-paniculata_contig13373:5285..56361622929060.3056886-CDS-H-paniculata_contig13373:5285..5636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13373 5286..5636 -
1691480716.16206-CDS-H-paniculata_contig13373:5285..56361691480716.16206-CDS-H-paniculata_contig13373:5285..5636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13373 5286..5636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13373.2110.1prot_H-paniculata_contig13373.2110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13373 5286..5636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13373.2110.1

>prot_H-paniculata_contig13373.2110.1 ID=prot_H-paniculata_contig13373.2110.1|Name=mRNA_H-paniculata_contig13373.2110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
PPVDCEIEDDQAPIHLAAMLGHEKTLSSLLMMGADVNAVDIYKISPLPLT
ACKGRLGAVKVLLEAGADVRFKGIDGWPLFFRLAMHEFVDVVVKELMEYG
VDVMSWDDNGMTTLQIA
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mRNA from alignment at H-paniculata_contig13373:5286..5636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13373.2110.1 ID=mRNA_H-paniculata_contig13373.2110.1|Name=mRNA_H-paniculata_contig13373.2110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig13373:5286..5636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCAGTTGACTGTGAAATAGAAGATGATCAAGCTCCTATCCATTTGGC TGCTATGCTAGGTCACGAGAAGACATTGTCCTCATTGTTGATGATGGGGG CAGACGTGAATGCAGTGGATATCTACAAGATATCTCCGTTACCGTTGACT GCCTGCAAAGGACGCCTTGGCGCAGTCAAAGTTCTGCTAGAAGCTGGGGC AGACGTTCGGTTCAAGGGTATTGATGGCTGGCCGCTGTTTTTCAGACTAG CTATGCACGAATTCGTGGACGTGGTGGTTAAAGAACTAATGGAGTACGGT GTTGATGTGATGTCGTGGGACGACAACGGCATGACGACTCTGCAAATCGC T
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Coding sequence (CDS) from alignment at H-paniculata_contig13373:5286..5636-

>mRNA_H-paniculata_contig13373.2110.1 ID=mRNA_H-paniculata_contig13373.2110.1|Name=mRNA_H-paniculata_contig13373.2110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig13373:5286..5636- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCAGTTGACTGTGAAATAGAAGATGATCAAGCTCCTATCCATTTGGC
TGCTATGCTAGGTCACGAGAAGACATTGTCCTCATTGTTGATGATGGGGG
CAGACGTGAATGCAGTGGATATCTACAAGATATCTCCGTTACCGTTGACT
GCCTGCAAAGGACGCCTTGGCGCAGTCAAAGTTCTGCTAGAAGCTGGGGC
AGACGTTCGGTTCAAGGGTATTGATGGCTGGCCGCTGTTTTTCAGACTAG
CTATGCACGAATTCGTGGACGTGGTGGTTAAAGAACTAATGGAGTACGGT
GTTGATGTGATGTCGTGGGACGACAACGGCATGACGACTCTGCAAATCGC
TCCACCAGTTGACTGTGAAATAGAAGATGATCAAGCTCCTATCCATTTGG
CTGCTATGCTAGGTCACGAGAAGACATTGTCCTCATTGTTGATGATGGGG
GCAGACGTGAATGCAGTGGATATCTACAAGATATCTCCGTTACCGTTGAC
TGCCTGCAAAGGACGCCTTGGCGCAGTCAAAGTTCTGCTAGAAGCTGGGG
CAGACGTTCGGTTCAAGGGTATTGATGGCTGGCCGCTGTTTTTCAGACTA
GCTATGCACGAATTCGTGGACGTGGTGGTTAAAGAACTAATGGAGTACGG
TGTTGATGTGATGTCGTGGGACGACAACGGCATGACGACTCTGCAAATCG
CT
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