mRNA_H-paniculata_contig13362.2106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13362.2106.1
Unique NamemRNA_H-paniculata_contig13362.2106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13362.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13362contigH-paniculata_contig13362:1241..2899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size948
Cds size948
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929059.743244-CDS-H-paniculata_contig13362:1240..16041622929059.743244-CDS-H-paniculata_contig13362:1240..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13362 1241..1604 +
1691480715.899261-CDS-H-paniculata_contig13362:1240..16041691480715.899261-CDS-H-paniculata_contig13362:1240..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13362 1241..1604 +
1622929059.7566159-CDS-H-paniculata_contig13362:2315..28991622929059.7566159-CDS-H-paniculata_contig13362:2315..2899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13362 2316..2899 +
1691480715.90755-CDS-H-paniculata_contig13362:2315..28991691480715.90755-CDS-H-paniculata_contig13362:2315..2899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13362 2316..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13362.2106.1prot_H-paniculata_contig13362.2106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13362 1241..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13362.2106.1

>prot_H-paniculata_contig13362.2106.1 ID=prot_H-paniculata_contig13362.2106.1|Name=mRNA_H-paniculata_contig13362.2106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MAGGESGGVGGGGGSGEGDAVADAVADAAARGRYGMRIEMESCVASLRRL
VSLDGQHRGGRDAGADPGGGGRGVVVGGSSVCCCAGLYATLLLRGWQLRA
LSEVVGRILGCSPALSGPEGIGALEALRAAVVKASELEARPPTTTSTPTT
AATPTPTTAATTPTATAAPSSSLLSSSSPPSSPRLRGMSDASPRGGPQSS
PSTLPDAVTASAVRAMPPLSLSATSSLSSTSGVIGGGIGHSRARTLSTGS
MGGVVGTEVGSSLSSLSAAAAGGTKESGNLGWFSEAALAQRVKELVELPR
CGSERSNWKRRRRQGG
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mRNA from alignment at H-paniculata_contig13362:1241..2899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13362.2106.1 ID=mRNA_H-paniculata_contig13362.2106.1|Name=mRNA_H-paniculata_contig13362.2106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1659bp|location=Sequence derived from alignment at H-paniculata_contig13362:1241..2899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGGGGGAGAGCGGTGGCGTCGGTGGGGGGGGCGGATCAGGAGA
AGGTGATGCTGTAGCTGATGCTGTAGCTGATGCTGCTGCGCGGGGCCGGT
ATGGGATGAGAATAGAGATGGAGTCGTGTGTGGCTTCGCTACGTCGACTT
GTTAGCCTCGACGGACAGCATCGTGGTGGGCGTGATGCTGGGGCGGACCC
GGGAGGCGGGGGCCGTGGTGTTGTTGTTGGTGGCAGCAGCGTGTGCTGTT
GTGCGGGGCTTTACGCCACCCTACTGCTGCGGGGGTGGCAGCTGCGCGCG
CTGAGCGAGGTGGTCGGTCGGATACTGGGTTGTAGTCCGGCGTTGAGCGG
ACCTGAGGGAATTGGTGAGTCAAGGCGAAGGAAATAGTAGAGAACGTTGG
GTGTTGTTTTGCGCAATGTATTTTCTTCTCGCTCAAGAATACTTGTGGGT
AGTATGTGATACAGTCAGTATTATTAGCTTCGGGGAAGATAGTTTGAACA
GGTTGGGTTTTGTCTCCTATCTAAAGCGATTTGCAACGAATGCGGGGCAT
TCGGACAAAGGCACGAGGCGTTTTGTGACCCCGTCACAAGAGACGTGTGA
GAATGGGGCGGTACACCCGTGGCTGCTGGAAGAATGGTTTTCTCTTGGGG
TATTTAGCACAAAATGGAGTATGTTTTGGTTATTTGGGCATTTTTCGAAA
GGGGCAGCCGCTCTCACTGACAGGGATAACGGTAACCCATTGGCCGGCAG
GTAGATCTCCCTCAAGTTCTTGCGCTCCTCCGTTTTTTTGGGGGGGGGCT
GTACAATCCGAAAACTGATCACAAGTGGTTCTCTATTTAAACCCGCTGAT
GAGATGTGAGATGCTACATCGTGCCACGCTGAACAAACGACTCGTTTGAA
CATAGACAGACCTCGACGTAACGTCTAGATCCGGAATTTTCTCGTGATAT
GTTAGTTCTCCTTCCTTCCCTCCGTCCCTCCTTCCCACCCACCCACTCAC
TCACTTTGCCGCTCTTGCTACTGTTGAATGTTTCGCGACGGCACCGGCAA
TTACCGCATCCCCGCGCACCCACAGGCGCGCTCGAAGCCCTCCGCGCTGC
GGTGGTCAAAGCTTCGGAGCTAGAGGCCCGTCCACCGACCACCACCTCCA
CCCCCACCACCGCCGCCACCCCCACTCCCACCACCGCCGCCACCACCCCC
ACCGCCACCGCCGCACCATCTTCGTCATTACTATCTTCATCTTCTCCACC
CTCCTCGCCTCGTCTCCGCGGAATGAGCGATGCTTCTCCTCGAGGAGGAC
CGCAATCCAGTCCTTCGACCTTGCCCGACGCCGTCACCGCCTCCGCTGTT
CGCGCTATGCCTCCGCTTTCCCTCTCTGCAACGTCATCATTGTCGTCAAC
CTCTGGTGTTATCGGCGGCGGTATCGGCCACTCCCGGGCGCGGACGCTGT
CAACGGGGTCCATGGGTGGCGTGGTAGGGACGGAGGTAGGATCGTCGTTG
TCATCGTTGTCGGCGGCGGCGGCCGGGGGGACGAAGGAGTCGGGGAACCT
AGGGTGGTTTTCGGAGGCGGCTCTTGCGCAGCGCGTAAAGGAGCTCGTCG
AGCTGCCGAGGTGTGGATCCGAAAGGTCCAATTGGAAGCGGCGACGGCGG
CAGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13362:1241..2899+

>mRNA_H-paniculata_contig13362.2106.1 ID=mRNA_H-paniculata_contig13362.2106.1|Name=mRNA_H-paniculata_contig13362.2106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig13362:1241..2899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGGGGGGAGAGCGGTGGCGTCGGTGGGGGGGGCGGATCAGGAGA
AGGTGATGCTGTAGCTGATGCTGTAGCTGATGCTGCTGCGCGGGGCCGGT
ATGGGATGAGAATAGAGATGGAGTCGTGTGTGGCTTCGCTACGTCGACTT
GTTAGCCTCGACGGACAGCATCGTGGTGGGCGTGATGCTGGGGCGGACCC
GGGAGGCGGGGGCCGTGGTGTTGTTGTTGGTGGCAGCAGCGTGTGCTGTT
GTGCGGGGCTTTACGCCACCCTACTGCTGCGGGGGTGGCAGCTGCGCGCG
CTGAGCGAGGTGGTCGGTCGGATACTGGGTTGTAGTCCGGCGTTGAGCGG
ACCTGAGGGAATTGATGGCGGGGGGGGAGAGCGGTGGCGTCGGTGGGGGG
GGCGGATCAGGAGAAGGTGATGCTGTAGCTGATGCTGTAGCTGATGCTGC
TGCGCGGGGCCGGTATGGGATGAGAATAGAGATGGAGTCGTGTGTGGCTT
CGCTACGTCGACTTGTTAGCCTCGACGGACAGCATCGTGGTGGGCGTGAT
GCTGGGGCGGACCCGGGAGGCGGGGGCCGTGGTGTTGTTGTTGGTGGCAG
CAGCGTGTGCTGTTGTGCGGGGCTTTACGCCACCCTACTGCTGCGGGGGT
GGCAGCTGCGCGCGCTGAGCGAGGTGGTCGGTCGGATACTGGGTTGTAGT
CCGGCGTTGAGCGGACCTGAGGGAATTGGCGCGCTCGAAGCCCTCCGCGC
TGCGGTGGTCAAAGCTTCGGAGCTAGAGGCCCGTCCACCGACCACCACCT
CCACCCCCACCACCGCCGCCACCCCCACTCCCACCACCGCCGCCACCACC
CCCACCGCCACCGCCGCACCATCTTCGTCATTACTATCTTCATCTTCTCC
ACCCTCCTCGCCTCGTCTCCGCGGAATGAGCGATGCTTCTCCTCGAGGAG
GACCGCAATCCAGTCCTTCGACCTTGCCCGACGCCGTCACCGCCTCCGCT
GTTCGCGCTATGCCTCCGCTTTCCCTCTCTGCAACGTCATCATTGTCGTC
AACCTCTGGTGTTATCGGCGGCGGTATCGGCCACTCCCGGGCGCGGACGC
TGTCAACGGGGTCCATGGGTGGCGTGGTAGGGACGGAGGTAGGATCGTCG
TTGTCATCGTTGTCGGCGGCGGCGGCCGGGGGGACGAAGGAGTCGGGGAA
CCTAGGGTGGTTTTCGGAGGCGGCTCTTGCGCAGCGCGTAAAGGAGCTCG
TCGAGCTGCCGAGGTGTGGATCCGAAAGGTCCAATTGGAAGCGGCGACGG
CGGCAGGGGGGGGCGCGCTCGAAGCCCTCCGCGCTGCGGTGGTCAAAGCT
TCGGAGCTAGAGGCCCGTCCACCGACCACCACCTCCACCCCCACCACCGC
CGCCACCCCCACTCCCACCACCGCCGCCACCACCCCCACCGCCACCGCCG
CACCATCTTCGTCATTACTATCTTCATCTTCTCCACCCTCCTCGCCTCGT
CTCCGCGGAATGAGCGATGCTTCTCCTCGAGGAGGACCGCAATCCAGTCC
TTCGACCTTGCCCGACGCCGTCACCGCCTCCGCTGTTCGCGCTATGCCTC
CGCTTTCCCTCTCTGCAACGTCATCATTGTCGTCAACCTCTGGTGTTATC
GGCGGCGGTATCGGCCACTCCCGGGCGCGGACGCTGTCAACGGGGTCCAT
GGGTGGCGTGGTAGGGACGGAGGTAGGATCGTCGTTGTCATCGTTGTCGG
CGGCGGCGGCCGGGGGGACGAAGGAGTCGGGGAACCTAGGGTGGTTTTCG
GAGGCGGCTCTTGCGCAGCGCGTAAAGGAGCTCGTCGAGCTGCCGAGGTG
TGGATCCGAAAGGTCCAATTGGAAGCGGCGACGGCGGCAGGGGGGG
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