mRNA_H-paniculata_contig1336.2101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1336.2101.1
Unique NamemRNA_H-paniculata_contig1336.2101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A6H5KMA6_9PHAE (Urease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMA6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.490e-11
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKANALYEWG 132
            +VLREGMGQA GVGA+E LETVITNAL++DYTGI+KA+   + G
Sbjct:  232 KVLREGMGQATGVGAAEALETVITNALVLDYTGIFKADVGMKGG 275          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: K3WH68_GLOUD (Urease n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH68_GLOUD)

HSP 1 Score: 65.1 bits (157), Expect = 5.350e-11
Identity = 29/38 (76.32%), Postives = 38/38 (100.00%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQA+G+GA++VL+T+ITNALI+DYTGIYKA+
Sbjct:  323 KVLREGMGQASGIGATKVLDTIITNALIIDYTGIYKAD 360          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A5D6Y9N1_9STRA (Urease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9N1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-10
Identity = 30/38 (78.95%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQA+GVGA+ VL+T+ITNALI+DYTGIYKA+
Sbjct:  321 KVLREGMGQASGVGAAGVLDTIITNALIVDYTGIYKAD 358          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A6S6QNU7_PYTIN (Urease (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A6S6QNU7_PYTIN)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 29/38 (76.32%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQA+G+ AS+VL+T+ITNALI+DYTGIYKA+
Sbjct:  284 KVLREGMGQASGLAASQVLDTIITNALILDYTGIYKAD 321          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: D8LB52_ECTSI (Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB52_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-10
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKANALYEWG 132
            +VLREGMGQA GVGA+E LETVITNAL++D+TGI+KA+   + G
Sbjct:  312 KVLREGMGQATGVGAAEALETVITNALVLDHTGIFKADVGMKGG 355          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A836CGS5_9STRA (Urease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-10
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQA GVG   VLETVITNALI+DYTGIYKA+
Sbjct:  322 KVLREGMGQATGVGPDAVLETVITNALIIDYTGIYKAD 359          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A7S0IGH1_MICPS (Urease (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGH1_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 2.570e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            + LREGMGQ  GVGAS VL+TVITNALI+DYTGIYKA+
Sbjct:   57 KTLREGMGQQCGVGASAVLDTVITNALIVDYTGIYKAD 94          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A7S0IGG9_MICPS (Urease (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGG9_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            + LREGMGQ  GVGAS VL+TVITNALI+DYTGIYKA+
Sbjct:  366 KTLREGMGQQCGVGASAVLDTVITNALIVDYTGIYKAD 403          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A7C7SW57_9PLAN (Urease subunit alpha n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7SW57_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQAAGVG  E L+ VITNAL++DYTGIYKA+
Sbjct:   50 KVLREGMGQAAGVGQDEALDVVITNALVIDYTGIYKAD 87          
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Match: A0A2Z6E9Y5_PYTIN (Urease (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2Z6E9Y5_PYTIN)

HSP 1 Score: 62.4 bits (150), Expect = 4.770e-10
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 QVLREGMGQAAGVGASEVLETVITNALIMDYTGIYKAN 114
            +VLREGMGQA+G+ A +VL+T+ITNALI+DYTGIYKA+
Sbjct:  310 KVLREGMGQASGLAAGQVLDTIITNALILDYTGIYKAD 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1336.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMA6_9PHAE3.490e-1170.45Urease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
K3WH68_GLOUD5.350e-1176.32Urease n=1 Tax=Globisporangium ultimum (strain ATC... [more]
A0A5D6Y9N1_9STRA1.000e-1078.95Urease n=1 Tax=Pythium brassicum TaxID=1485010 Rep... [more]
A0A6S6QNU7_PYTIN1.360e-1076.32Urease (Fragment) n=1 Tax=Pythium insidiosum TaxID... [more]
D8LB52_ECTSI1.870e-1068.18Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A836CGS5_9STRA1.870e-1081.58Urease n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S0IGH1_MICPS2.570e-1078.95Urease (Fragment) n=1 Tax=Micromonas pusilla TaxID... [more]
A0A7S0IGG9_MICPS4.760e-1078.95Urease (Fragment) n=1 Tax=Micromonas pusilla TaxID... [more]
A0A7C7SW57_9PLAN4.760e-1076.32Urease subunit alpha n=1 Tax=Planctomycetaceae bac... [more]
A0A2Z6E9Y5_PYTIN4.770e-1073.68Urease (Fragment) n=2 Tax=Pythium insidiosum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1336contigH-paniculata_contig1336:283..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionAmidohydrolase 1
Ec32 orthologEc-27_005190.2
Exons1
Model size153
Cds size135
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.8351765-UTR-H-paniculata_contig1336:282..3001622929058.8351765-UTR-H-paniculata_contig1336:282..300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1336 283..300 +
1691480715.4099157-UTR-H-paniculata_contig1336:282..3001691480715.4099157-UTR-H-paniculata_contig1336:282..300Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1336 283..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.8618798-CDS-H-paniculata_contig1336:300..4351622929058.8618798-CDS-H-paniculata_contig1336:300..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1336 301..435 +
1691480715.4187143-CDS-H-paniculata_contig1336:300..4351691480715.4187143-CDS-H-paniculata_contig1336:300..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1336 301..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1336.2101.1prot_H-paniculata_contig1336.2101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1336 301..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1336.2101.1

>prot_H-paniculata_contig1336.2101.1 ID=prot_H-paniculata_contig1336.2101.1|Name=mRNA_H-paniculata_contig1336.2101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MGQAAGVGASEVLETVITNALIMDYTGIYKANALYEWGANNLSR*
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mRNA from alignment at H-paniculata_contig1336:283..435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1336.2101.1 ID=mRNA_H-paniculata_contig1336.2101.1|Name=mRNA_H-paniculata_contig1336.2101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig1336:283..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCTTCGTGAGGGAATGGGGCAGGCTGCTGGCGTGGGTGCCTCGGA AGTTTTGGAAACGGTCATCACCAACGCCCTCATCATGGACTACACGGGGA TTTACAAGGCAAATGCTCTTTACGAATGGGGAGCAAACAACTTGTCCCGA TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1336:283..435+

>mRNA_H-paniculata_contig1336.2101.1 ID=mRNA_H-paniculata_contig1336.2101.1|Name=mRNA_H-paniculata_contig1336.2101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig1336:283..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCAGGCTGCTGGCGTGGGTGCCTCGGAAGTTTTGGAAACGGTCAT
CACCAACGCCCTCATCATGGACTACACGGGGATTTACAAGGCAAATGCTC
TTTACGAATGGGGAGCAAACAACTTGTCCCGATGAATGGGGCAGGCTGCT
GGCGTGGGTGCCTCGGAAGTTTTGGAAACGGTCATCACCAACGCCCTCAT
CATGGACTACACGGGGATTTACAAGGCAAATGCTCTTTACGAATGGGGAG
CAAACAACTTGTCCCGATGA
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