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Homology
BLAST of mRNA_H-paniculata_contig13351.2097.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI) HSP 1 Score: 123 bits (309), Expect = 7.100e-29 Identity = 94/200 (47.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query: 54 GMTDTKYPFREFCAPFTSFILAPDLT-------WQEYCEESYVPFMSVVIDTQAFKYLLETQDLPALRPFHDMLNKARRDASKKGNRHETRDA--GAHSADEAGSTAAFNGPFPMGVAKDDFAPSL--SVVVGNGLDGASRLAAARGGAAVRRSGDGDYAPPAFAIPAPALKSFVLRASAK------DEQEEALNASRGK 602
M D Y F E C F L PD QEYCEESYVPFMSVVIDT AFKYLLETQD P LRPFHD+L+KARRDA +KG H DE + AF+GPFP+ D+ S S GA+ AARG A R G PPAFAIP+P L+SF +E+E L+ASRGK
Sbjct: 859 AMADMLYGFTE-CL----FFLHPDRPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDTPPLRPFHDLLDKARRDALRKGGDHRKHQMILAPQVPDEPPTAGAFDGPFPVVHGFDEVVVSRPKSSDAPAAAAGAAGTDAARG--AARLVGGTALPPPAFAIPSPPLRSFAQHGGXXXXXXRGEEEEVDLSASRGK 1051
BLAST of mRNA_H-paniculata_contig13351.2097.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE) HSP 1 Score: 118 bits (295), Expect = 5.310e-27 Identity = 84/176 (47.73%), Postives = 93/176 (52.84%), Query Frame = 3
Query: 54 GMTDTKYPFREFCAPFTSFILAPDLT-------WQEYCEESYVPFMSVVIDTQAFKYLLETQDLPALRPFHDMLNKARRDASKKGNRHETRDA--GAHSADEAGSTAAFNGPFPMGVAKDDFA---PSLSVVVGNGLDGASRLAAARGGAAVRRSGDGDYAPPAFAIPAPALKSFV 545
M D Y F E C F L PD QEYCEESYVPFMSVVIDT AFKYLLETQD P LRPFHD+L+KARRDA +KG H DE + AF+GPFP+ D+ P S GA+ AA G R G PPAFAIP+P L SF
Sbjct: 897 AMADMLYGFTE-CL----FFLHPDRPIFNGARFLQEYCEESYVPFMSVVIDTLAFKYLLETQDTPPLRPFHDLLDKARRDALRKGGDHRKHQMILAPQVPDEPPTAGAFDGPFPVVNGFDEAVVSRPKSSDAPTAAAAGAAGTDAATLGGEARLVGGATLPPPAFAIPSPPLSSFA 1067
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 128.6 |
| Seed ortholog evalue | 3.1e-27 |
| Seed eggNOG ortholog | 2880.D8LB83 |
| Preferred name | SCD1 |
| KEGG ko | ko:K03361,ko:K20164 |
| KEGG Pathway | ko04111,ko04120,map04111,map04120 |
| KEGG Module | M00407 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244 |
| EggNOG free text desc. | Rab guanyl-nucleotide exchange factor activity |
| EggNOG OGs | KOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko04121,ko04131 |
| Exons | 3 |
| Model size | 636 |
| Cds size | 579 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13351.2097.1 >prot_H-paniculata_contig13351.2097.1 ID=prot_H-paniculata_contig13351.2097.1|Name=mRNA_H-paniculata_contig13351.2097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MTDTKYPFREFCAPFTSFILAPDLTWQEYCEESYVPFMSVVIDTQAFKYL
LETQDLPALRPFHDMLNKARRDASKKGNRHETRDAGAHSADEAGSTAAFN
GPFPMGVAKDDFAPSLSVVVGNGLDGASRLAAARGGAAVRRSGDGDYAPP
AFAIPAPALKSFVLRASAKDEQEEALNASRGKFDGLPGESDSA back to topmRNA from alignment at H-paniculata_contig13351:4035..6736- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig13351.2097.1 ID=mRNA_H-paniculata_contig13351.2097.1|Name=mRNA_H-paniculata_contig13351.2097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2702bp|location=Sequence derived from alignment at H-paniculata_contig13351:4035..6736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAAGTCATTGTCTCGCTTCGATGTTTGATGATGCGATATCTTTGATAT
GACGGAATGACGGACACGAAATATCCATTTCGCGAGTTTTGTGCCCCTTT
CACGTCGTTCATCCTTGCGCCTGACCTGACCTGGCAGGAGTATTGCGAGG
AGTCATACGTGCCGTTCATGTCGGTTGTCATCGACACGCAGGCCTTCAAG
TACCTGCTTGAGACGCAGGATCTGCCAGCGTTGAGACCGTTTCACGACAT
GCTGAACAAAGCCCGGAGGTAGCCCGACTCATGTTTTTCTTTTGTTTTTC
CCAACTTTCGGTGCACAAGTTTTCACTGGATCATCGTTACTTCTGCTATA
AAGCGACCGTGTAACCACTTATCGCGGGTGTTTTTCAAAGATTTTTCGCG
GTTCGAGCTTTTTGTTTTTTTCATTGTCTGTTTAGAGGTCGGACCGAAGG
GTTTTGTTTTTCGTTCCGTGTCACTTCTTCATGTGTGATATCATAGTTTT
TTAGTGGTCACAAGAGAAGACTGGGTTGCAGAGAGTATATATTATGTATG
CGAAGAACTTGAGCGTTCTGTCGAAGTCTCCAATAAACACGTGCTTCTGA
ACCAATACAAGTGTTTGTTGTGTTCGCGCGTCTTTCAGTCAGTAGATATA
ACCCCGGTACTGTCCTATGTTGCCTTGTATTTCTCGTCGCCCTTCCTCTT
GCGAGAAATAGAGATGCCTCTAAGAAGGGAAACAGGCACGAGACTCGGGA
CGCTGGCGCCCACAGTGCGGACGAGGCGGGTTCCACCGCTGCGTTTAACG
GGCCGTTTCCGATGGGTGAGTGCTGGTTGTGATCTTTGCTTGCTCCCCCT
CAGTCTTGTCTCTCAATGTTTCTCGTCTTTTCTCCCTCTTCTTTTACTCT
GGGGGATTACGGCGATGGCATTCATCATTGTAATAAATGTGTACCGATAA
GAAACTACTTTTTCCCTCCTCCTTTTTGTTTTTTTTGTTGAATTCTATAG
GCCACTTGCATGTAGACCCTGAGTCCACCAAATACGATATTGGGCGGAAC
TTCCATCATAGACAATTTGTTGACAACCGTACGGATACACACAATTTCGA
TGGCTCACGATCAAATGGAGGCTCGATCAACTGGTGGTAGCAACAACGAA
TTGGGTTACGTTCCATGTGCAGCACCACAAATCCACGAAAGAAGTAGGTT
GACGTCCATACATTGCATACACTCTTACAGAGTGACGGCGGCTGTACTCG
GCATGCTGATCGCACCATTATGACACAAGAACGATGCCATGACCGCAACA
GGCAACTTAAAACTTGAGCGGGTTTCTTTGTTCACGACCCGACCTGGAGT
GTTGACCTGACGAGCGCGCTACGGCTCCCCCGAACACACCCTCTGCTGTT
CCCACGCCCCAGACTACTACGTGTGACCATGCATGCCAATGCATATCTCG
ATCAATACCTACGGCCGGCAGCATCGCCGTGCTTACACGCAGCTAACACA
TCGTTACCCCCAAAGCTGTTCAACTCTGTTTTCGGCTTCTTGACTGCAGA
ATGTTTTGTCTGCATTTTAGTTAGCCTGACCCAACCAGACAAAATTTCAT
CGCTAACAACCAAACAAAGGCTCGACTTGGCTCGATTTGAATTAGTTTCA
GCAAAATGATTCTGGCCTGTGCCCGGTACACACGGCCACGACTCGAGGAG
CGGCCTTGCCGATTATATGACACTGGGATCAACCCGCCGCCTTGTGGTTC
GTTGTGATACACCGTGCAGAGATTACAGCACAGGTAGTGTCTGTACTTTT
CGGCTGCTCGAAACACCACTACAAAATTTGTACCGTCTACGCAAACAACA
CAATTCTGTACATCGATTTGTCAGGTCACCGCCAATTCAGTTTTGTACTC
TCGCATTCCAGTATTTCGATCAGCGTGCCCACCACAGCCGAAGTCACCGT
ATCAAAGTGTATGCATCGTGAACCAAGCTCATCCTCTTCGACTGTGGTGC
GCCAAATCGGATGTAAAGCCAACTTGGCGTTGCTGCTAGAACAACTCAGG
ACATGGTATTTCCTTTGATCAATCAGAATTCCATGTTTCTGTACGGTTGA
CAGAAACGTTCATGATAGCGGTTCCGCCCATTTTCAATTTTTGCCCAAAT
GCAAGTGGTCTGTTGGCTGCTCTACCGGAACCGAGCATTCCACTTTGTGT
GTTCCGTTTGTGGCTAGATTCAAGAGACAGTTGAAGGTGAGAGTGATCAT
ACTTGAGCCGAGTCAGGCTCACTCTCCTCGAGGTACAACCCCAGCATTCC
CGCCTTACCAAGAGGAGATTGAAGGTTGATCTGTACAAAATACAAGGGTA
CCGTCGGCGCTGGATAGAAGTCACGCTGTCTTTCCCCTCCCTCGTCTAAG
TGACTCCCCCCCCCCCCCCCGTGAACACGTAAAAAACAGGAGTTGCGAAG
GACGACTTCGCGCCTTCTCTTAGCGTCGTCGTCGGGAATGGTTTGGACGG
TGCCAGCAGGCTCGCGGCGGCGAGAGGTGGAGCTGCGGTGCGACGGTCGG
GGGATGGAGATTATGCTCCTCCAGCATTTGCAATCCCCGCCCCTGCTCTC
AAATCGTTCGTACTACGAGCGAGCGCCAAGGACGAACAGGAGGAAGCCTT
GAATGCAAGCAGAGGTAAGTTCGACGGTTTGCCCGGTGAAAGCGACAGCG
CC back to topCoding sequence (CDS) from alignment at H-paniculata_contig13351:4035..6736- >mRNA_H-paniculata_contig13351.2097.1 ID=mRNA_H-paniculata_contig13351.2097.1|Name=mRNA_H-paniculata_contig13351.2097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig13351:4035..6736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGACACGAAATATCCATTTCGCGAGTTTTGTGCCCCTTTCACGTC
GTTCATCCTTGCGCCTGACCTGACCTGGCAGGAGTATTGCGAGGAGTCAT
ACGTGCCGTTCATGTCGGTTGTCATCGACACGCAGGCCTTCAAGTACCTG
CTTGAGACGCAGGATCTGCCAGCGTTGAGACCGTTTCACGACATGCTGAA
CAAAGCCCGGAGATGACGGACACGAAATATCCATTTCGCGAGTTTTGTGC
CCCTTTCACGTCGTTCATCCTTGCGCCTGACCTGACCTGGCAGGAGTATT
GCGAGGAGTCATACGTGCCGTTCATGTCGGTTGTCATCGACACGCAGGCC
TTCAAGTACCTGCTTGAGACGCAGGATCTGCCAGCGTTGAGACCGTTTCA
CGACATGCTGAACAAAGCCCGGAGAGATGCCTCTAAGAAGGGAAACAGGC
ACGAGACTCGGGACGCTGGCGCCCACAGTGCGGACGAGGCGGGTTCCACC
GCTGCGTTTAACGGGCCGTTTCCGATGGAGATGCCTCTAAGAAGGGAAAC
AGGCACGAGACTCGGGACGCTGGCGCCCACAGTGCGGACGAGGCGGGTTC
CACCGCTGCGTTTAACGGGCCGTTTCCGATGGGAGTTGCGAAGGACGACT
TCGCGCCTTCTCTTAGCGTCGTCGTCGGGAATGGTTTGGACGGTGCCAGC
AGGCTCGCGGCGGCGAGAGGTGGAGCTGCGGTGCGACGGTCGGGGGATGG
AGATTATGCTCCTCCAGCATTTGCAATCCCCGCCCCTGCTCTCAAATCGT
TCGTACTACGAGCGAGCGCCAAGGACGAACAGGAGGAAGCCTTGAATGCA
AGCAGAGGTAAGTTCGACGGTTTGCCCGGTGAAAGCGACAGCGCCGAGTT
GCGAAGGACGACTTCGCGCCTTCTCTTAGCGTCGTCGTCGGGAATGGTTT
GGACGGTGCCAGCAGGCTCGCGGCGGCGAGAGGTGGAGCTGCGGTGCGAC
GGTCGGGGGATGGAGATTATGCTCCTCCAGCATTTGCAATCCCCGCCCCT
GCTCTCAAATCGTTCGTACTACGAGCGAGCGCCAAGGACGAACAGGAGGA
AGCCTTGAATGCAAGCAGAGGTAAGTTCGACGGTTTGCCCGGTGAAAGCG
ACAGCGCC back to top
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