mRNA_H-paniculata_contig13351.2096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13351.2096.1
Unique NamemRNA_H-paniculata_contig13351.2096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13351.2096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13351contigH-paniculata_contig13351:1815..3998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1636
Cds size1635
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13351.2096.1prot_H-paniculata_contig13351.2096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13351 1815..3998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.3038547-CDS-H-paniculata_contig13351:1814..21351622929058.3038547-CDS-H-paniculata_contig13351:1814..2135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 1815..2135 -
1691480715.1719887-CDS-H-paniculata_contig13351:1814..21351691480715.1719887-CDS-H-paniculata_contig13351:1814..2135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 1815..2135 -
1622929058.3524263-CDS-H-paniculata_contig13351:2380..25081622929058.3524263-CDS-H-paniculata_contig13351:2380..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 2381..2508 -
1691480715.180412-CDS-H-paniculata_contig13351:2380..25081691480715.180412-CDS-H-paniculata_contig13351:2380..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 2381..2508 -
1622929058.3725274-CDS-H-paniculata_contig13351:2812..39981622929058.3725274-CDS-H-paniculata_contig13351:2812..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 2813..3998 -
1691480715.188247-CDS-H-paniculata_contig13351:2812..39981691480715.188247-CDS-H-paniculata_contig13351:2812..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13351 2813..3998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13351.2096.1

>prot_H-paniculata_contig13351.2096.1 ID=prot_H-paniculata_contig13351.2096.1|Name=mRNA_H-paniculata_contig13351.2096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=545bp
GGEEGLAEDAQEVEQAAEETREGSPSRAQQQRSHTISVSLASSLVAEDVV
IMDENDVGDREAGATGKSIAVGPAARAAAAAAAAGNSGEPRAEAGRGRDL
DKRPVGKVSDLRGTFFGTMKSVTGRATATLQSRSSLPTGAGAGKGSYDVE
ADEMADEAQEEKGSAVTKGGRRTSSLHPDVDCYDSAGEWASEGSDGLTPV
LRAKLSRRRSSGAYTDRASASAVAAVTGGSLLFRETAVNRDGVGHGACSG
NEQDDVEESEKDQVTDVAAAAAAATAVMTQTAGESALEESIALGDNGAGG
APGKRMAPPPRLAVEKSEEGVAAGAGSDVGGEVSSSGHGSVSPRRRRIGG
GIRERMKMFEQGRELRRGNEDSGVSGATVGSRRSRGAEDKGLEKLGSSLR
WPPSSQTAGTKKAGGVFEGRELVLEARSLRRKSSVGSQGGETDPPPRTQF
LRGGSEKKPPRIEPSPAPRAAPSLAPPPVPPSPAPRAAPSLAPPLVPPSP
APRAAPSLAPPPVPPSPAPRAAPFLAPPPVPPSPAPRAAPFLAPP
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mRNA from alignment at H-paniculata_contig13351:1815..3998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13351.2096.1 ID=mRNA_H-paniculata_contig13351.2096.1|Name=mRNA_H-paniculata_contig13351.2096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig13351:1815..3998- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCGAAGAGGGGCTAGCGGAGGACGCACAAGAGGTCGAGCAGGCGGC
GGAAGAAACGAGAGAGGGCTCGCCGTCGCGAGCGCAACAGCAGCGAAGCC
ACACCATATCGGTCAGTTTGGCGTCTTCGCTGGTTGCAGAGGATGTCGTT
ATCATGGATGAAAATGACGTTGGTGACAGAGAAGCAGGCGCCACGGGGAA
ATCTATTGCTGTTGGACCGGCAGCCCGGGCCGCTGCCGCTGCCGCTGCCG
CCGGTAATTCAGGCGAGCCTCGGGCAGAAGCAGGACGAGGAAGAGACCTC
GATAAGAGGCCAGTGGGTAAGGTTTCTGACCTTCGAGGAACGTTCTTCGG
TACCATGAAGAGCGTAACGGGCAGGGCAACCGCAACTCTCCAAAGCCGGT
CGTCACTACCTACTGGTGCCGGTGCGGGTAAAGGCAGCTATGATGTAGAA
GCCGACGAGATGGCTGACGAAGCACAGGAAGAGAAAGGGTCAGCGGTGAC
GAAGGGGGGTAGGCGGACATCGAGCCTCCACCCCGATGTTGACTGCTATG
ACTCGGCGGGCGAGTGGGCGTCGGAGGGTAGTGATGGGTTGACGCCCGTG
CTTCGCGCCAAGTTGTCTCGTCGGCGGTCATCTGGTGCGTATACTGATCG
TGCCTCCGCCTCCGCCGTCGCTGCGGTAACCGGTGGGTCCTTGCTATTTA
GGGAGACCGCCGTGAACAGAGATGGCGTGGGCCACGGCGCTTGCAGTGGG
AACGAGCAAGATGATGTTGAGGAGTCAGAGAAAGACCAGGTCACAGACGT
TGCCGCCGCCGCCGCCGCCGCCACCGCCGTAATGACTCAAACCGCTGGGG
AAAGTGCGCTAGAGGAATCGATCGCCCTCGGCGACAACGGTGCGGGTGGT
GCGCCTGGGAAGAGGATGGCGCCGCCGCCGAGATTGGCCGTGGAGAAGAG
CGAAGAGGGGGTAGCAGCGGGTGCTGGGAGTGATGTTGGTGGGGAGGTTT
CGTCCTCGGGCCATGGGTCCGTGTCACCGCGAAGGCGGCGCATTGGAGGT
GGCATCAGAGAGAGGATGAAGATGTTCGAGCAGGGCAGGGAGTTGCGACG
GGGAAATGAGGACAGCGGCGTAAGCGGAGCAACGGTCGGTAGCAGGCGGA
GTAGGGGTGCGGAGGACAAGGGATTGGAAAAACTGGGTGGGTTTAGTATT
GATTTCAGACGTGTCTGTTCGTTTTCTGAGAAAATTTCACCAAAAAGGCT
TGATGAGGTTGACCAGAGTACGCGAAAATCTCGTCCTCTTTGCGACATAT
TAGACTATGACTTGTGTGTGCAGCGAGACATGATATGCAGGTTTAACCAA
CCTTCCCCTCTGTCAGTTGACTCGTGTTGACGTCAATGCAGTCTGTGACT
ATCCTTGCCTGCACCCTATTTTTTGTTCGCTGAATTTTTATGTGCCTTTA
ACTATACCTTACACAAACGTTTGCTTCGTATCTGATGTAGGGAGTTCTCT
CCGTTGGCCACCTTCCAGCCAGACGGCTGGCACTAAGAAGGCAGGAGGTG
TGTTTGAAGGACGAGAGCTCGTATTGGAAGCAAGATCATTAAGAAGGAAG
TCTTCGGTGGGGTCACAGGTGCGGCGTGCATACAATAGATAGTATGGATG
GAGCGTGGGGGGGAATTCTGGTGTATGTGTTTTGTAAGAACCATCTCGCC
CTTCCACGGCGGCATTCTTAAAATGCAGTAAAAAATAGTGTGAGATGAGT
CTACTGAATTGGCTTTTGCTGCCTTTGTTTCCCCCAATACGCTGATCCAT
CTTCATGATCGTGGCGCTGTTGCTTGCCCTTTTATGTATCCTTTATCCCC
GTTTCCCGCTAAGGGTGGAGAAACGGACCCGCCGCCGCGGACGCAGTTTC
TTCGAGGCGGATCGGAGAAAAAACCACCCCGGATCGAGCCATCGCCCGCA
CCACGAGCGGCACCTTCTCTAGCGCCCCCGCCGGTCCCGCCGTCGCCCGC
ACCACGAGCGGCACCTTCACTAGCGCCCCCGCTGGTCCCGCCGTCGCCCG
CACCACGAGCGGCACCTTCTCTAGCGCCCCCACCGGTCCCGCCGTCGCCC
GCACCACGAGCGGCACCTTTTCTAGCGCCCCCACCGGTCCCGCCGTCGCC
CGCACCACGAGCGGCACCTTTTCTAGCGCCCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig13351:1815..3998-

>mRNA_H-paniculata_contig13351.2096.1 ID=mRNA_H-paniculata_contig13351.2096.1|Name=mRNA_H-paniculata_contig13351.2096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3270bp|location=Sequence derived from alignment at H-paniculata_contig13351:1815..3998- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCGAAGAGGGGCTAGCGGAGGACGCACAAGAGGTCGAGCAGGCGGC
GGAAGAAACGAGAGAGGGCTCGCCGTCGCGAGCGCAACAGCAGCGAAGCC
ACACCATATCGGTCAGTTTGGCGTCTTCGCTGGTTGCAGAGGATGTCGTT
ATCATGGATGAAAATGACGTTGGTGACAGAGAAGCAGGCGCCACGGGGAA
ATCTATTGCTGTTGGACCGGCAGCCCGGGCCGCTGCCGCTGCCGCTGCCG
CCGGTAATTCAGGCGAGCCTCGGGCAGAAGCAGGACGAGGAAGAGACCTC
GATAAGAGGCCAGTGGGTAAGGTTTCTGACCTTCGAGGAACGTTCTTCGG
TACCATGAAGAGCGTAACGGGCAGGGCAACCGCAACTCTCCAAAGCCGGT
CGTCACTACCTACTGGTGCCGGTGCGGGTAAAGGCAGCTATGATGTAGAA
GCCGACGAGATGGCTGACGAAGCACAGGAAGAGAAAGGGTCAGCGGTGAC
GAAGGGGGGTAGGCGGACATCGAGCCTCCACCCCGATGTTGACTGCTATG
ACTCGGCGGGCGAGTGGGCGTCGGAGGGTAGTGATGGGTTGACGCCCGTG
CTTCGCGCCAAGTTGTCTCGTCGGCGGTCATCTGGTGCGTATACTGATCG
TGCCTCCGCCTCCGCCGTCGCTGCGGTAACCGGTGGGTCCTTGCTATTTA
GGGAGACCGCCGTGAACAGAGATGGCGTGGGCCACGGCGCTTGCAGTGGG
AACGAGCAAGATGATGTTGAGGAGTCAGAGAAAGACCAGGTCACAGACGT
TGCCGCCGCCGCCGCCGCCGCCACCGCCGTAATGACTCAAACCGCTGGGG
AAAGTGCGCTAGAGGAATCGATCGCCCTCGGCGACAACGGTGCGGGTGGT
GCGCCTGGGAAGAGGATGGCGCCGCCGCCGAGATTGGCCGTGGAGAAGAG
CGAAGAGGGGGTAGCAGCGGGTGCTGGGAGTGATGTTGGTGGGGAGGTTT
CGTCCTCGGGCCATGGGTCCGTGTCACCGCGAAGGCGGCGCATTGGAGGT
GGCATCAGAGAGAGGATGAAGATGTTCGAGCAGGGCAGGGAGTTGCGACG
GGGAAATGAGGACAGCGGCGTAAGCGGAGCAACGGTCGGTAGCAGGCGGA
GTAGGGGTGCGGAGGACAAGGGATTGGAAAAACTGGGGGGGCGAAGAGGG
GCTAGCGGAGGACGCACAAGAGGTCGAGCAGGCGGCGGAAGAAACGAGAG
AGGGCTCGCCGTCGCGAGCGCAACAGCAGCGAAGCCACACCATATCGGTC
AGTTTGGCGTCTTCGCTGGTTGCAGAGGATGTCGTTATCATGGATGAAAA
TGACGTTGGTGACAGAGAAGCAGGCGCCACGGGGAAATCTATTGCTGTTG
GACCGGCAGCCCGGGCCGCTGCCGCTGCCGCTGCCGCCGGTAATTCAGGC
GAGCCTCGGGCAGAAGCAGGACGAGGAAGAGACCTCGATAAGAGGCCAGT
GGGTAAGGTTTCTGACCTTCGAGGAACGTTCTTCGGTACCATGAAGAGCG
TAACGGGCAGGGCAACCGCAACTCTCCAAAGCCGGTCGTCACTACCTACT
GGTGCCGGTGCGGGTAAAGGCAGCTATGATGTAGAAGCCGACGAGATGGC
TGACGAAGCACAGGAAGAGAAAGGGTCAGCGGTGACGAAGGGGGGTAGGC
GGACATCGAGCCTCCACCCCGATGTTGACTGCTATGACTCGGCGGGCGAG
TGGGCGTCGGAGGGTAGTGATGGGTTGACGCCCGTGCTTCGCGCCAAGTT
GTCTCGTCGGCGGTCATCTGGTGCGTATACTGATCGTGCCTCCGCCTCCG
CCGTCGCTGCGGTAACCGGTGGGTCCTTGCTATTTAGGGAGACCGCCGTG
AACAGAGATGGCGTGGGCCACGGCGCTTGCAGTGGGAACGAGCAAGATGA
TGTTGAGGAGTCAGAGAAAGACCAGGTCACAGACGTTGCCGCCGCCGCCG
CCGCCGCCACCGCCGTAATGACTCAAACCGCTGGGGAAAGTGCGCTAGAG
GAATCGATCGCCCTCGGCGACAACGGTGCGGGTGGTGCGCCTGGGAAGAG
GATGGCGCCGCCGCCGAGATTGGCCGTGGAGAAGAGCGAAGAGGGGGTAG
CAGCGGGTGCTGGGAGTGATGTTGGTGGGGAGGTTTCGTCCTCGGGCCAT
GGGTCCGTGTCACCGCGAAGGCGGCGCATTGGAGGTGGCATCAGAGAGAG
GATGAAGATGTTCGAGCAGGGCAGGGAGTTGCGACGGGGAAATGAGGACA
GCGGCGTAAGCGGAGCAACGGTCGGTAGCAGGCGGAGTAGGGGTGCGGAG
GACAAGGGATTGGAAAAACTGGGGAGTTCTCTCCGTTGGCCACCTTCCAG
CCAGACGGCTGGCACTAAGAAGGCAGGAGGTGTGTTTGAAGGACGAGAGC
TCGTATTGGAAGCAAGATCATTAAGAAGGAAGTCTTCGGTGGGGTCACAG
GGAGTTCTCTCCGTTGGCCACCTTCCAGCCAGACGGCTGGCACTAAGAAG
GCAGGAGGTGTGTTTGAAGGACGAGAGCTCGTATTGGAAGCAAGATCATT
AAGAAGGAAGTCTTCGGTGGGGTCACAGGGTGGAGAAACGGACCCGCCGC
CGCGGACGCAGTTTCTTCGAGGCGGATCGGAGAAAAAACCACCCCGGATC
GAGCCATCGCCCGCACCACGAGCGGCACCTTCTCTAGCGCCCCCGCCGGT
CCCGCCGTCGCCCGCACCACGAGCGGCACCTTCACTAGCGCCCCCGCTGG
TCCCGCCGTCGCCCGCACCACGAGCGGCACCTTCTCTAGCGCCCCCACCG
GTCCCGCCGTCGCCCGCACCACGAGCGGCACCTTTTCTAGCGCCCCCACC
GGTCCCGCCGTCGCCCGCACCACGAGCGGCACCTTTTCTAGCGCCCCCAG
GTGGAGAAACGGACCCGCCGCCGCGGACGCAGTTTCTTCGAGGCGGATCG
GAGAAAAAACCACCCCGGATCGAGCCATCGCCCGCACCACGAGCGGCACC
TTCTCTAGCGCCCCCGCCGGTCCCGCCGTCGCCCGCACCACGAGCGGCAC
CTTCACTAGCGCCCCCGCTGGTCCCGCCGTCGCCCGCACCACGAGCGGCA
CCTTCTCTAGCGCCCCCACCGGTCCCGCCGTCGCCCGCACCACGAGCGGC
ACCTTTTCTAGCGCCCCCACCGGTCCCGCCGTCGCCCGCACCACGAGCGG
CACCTTTTCTAGCGCCCCCA
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