Homology
BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match:
A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)
HSP 1 Score: 129 bits (325), Expect = 1.240e-28
Identity = 97/202 (48.02%), Postives = 105/202 (51.98%), Query Frame = 1
Query: 223 RGSRRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGH-------VQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGYVRSPMAGQQAGMMVMQSPQPWQQVHIDPQTQAMAAAAG------GGLPPVAYGAGPTTGPHGLYT-HSYVDPAQAA 786
RGSRR VNAGEWKGQRGMQRN MAEKSDPDFVRNYD+YRPSFAPYRQLADP GGG GGG QQP P PRLL Q A+ + GQ HAMM G+QG+ + GQ G M + QAM GG P V YGA H +Y YVDPAQAA
Sbjct: 574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGG----GGGRGXXXXXXXXXXXQQPQPSPRLLQQ-------HPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQ---LRGQMPGQM---------------EAQAMXXXXXXXXXXXGGAPSV-YGA--AVPGHAMYAAQGYVDPAQAA 743
BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match:
D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)
HSP 1 Score: 104 bits (260), Expect = 2.450e-20
Identity = 64/125 (51.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 232 RRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGHVQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGY-VRSPMAGQ 603
RR VNAGEWKGQRGMQRN MAEKSDPDFVRNYDNYRPSFAPYRQLADP G GG G A+ + GQ HAMM G+QG+ +R M GQ
Sbjct: 694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG----RGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.24e-28 / Id = 48.02 Expect = 2.45e-20 / Id = 51.20 Sequence A0A6H5KC01_9PHAE D8LM72_ECTSI
Match Name E-value Identity Description
A0A6H5KC01_9PHAE 1.240e-28 48.02 SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more] D8LM72_ECTSI 2.450e-20 51.20 R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-18_002725.1 Exons 3 Model size 1302 Cds size 1302 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13350.2095.1
>prot_H-paniculata_contig13350.2095.1 ID=prot_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp
GFGRGRGKPLPGRGDGERGAAVAVGGGGGTRGPGVDGPDRGNGMVSGDFR back to top mRNA from alignment at H-paniculata_contig13350:4801..6986+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13350.2095.1 ID=mRNA_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2186bp|location=Sequence derived from alignment at H-paniculata_contig13350:4801..6986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GGGTTCGGTCGCGGCCGCGGCAAGCCTCTCCCGGGGAGGGGCGACGGGGA
GCGGGGCGCCGCGGTCGCCGTGGGAGGAGGAGGAGGAACCCGAGGCCCCG
GCGTTGATGGCCCTGATCGGGGCAATGGTATGGTGTCGGGAGATTTTAGG
CGTCACGATGGAGCCGGGAGAGGAGGCGGTGGAGGGAGAGGCGGCGGCGG
TGGTGGTGGTGGTGGTGGAGGGCGGGGTAGTCGGAGAGCTCCAGTTAACG
CGGGGGAATGGAAAGGGCAGCGAGGAATGCAGCGCAACTGCATGGCGGAG
AAGTCGGACCCGGATTTTGTGCGTAATTACGACAACTATCGGCCAAGTTT
CGCGCCGTATAGGCAGCTAGCAGACCCGAACGGGGGCGGTTTCACCACCG
GCGGTGGTGGACATGTACAGGGACAGCCGCAGCAGCCTCATCCGCCTCCG
CGATTGCTCCACCAGCAGCAGGTGTGCGTGTGTACGCGTGAGAGTGCTTT
ACGGTGTTGGTTG GTATCGGCGTTTTAAGGTTCGTAGTTGTTTATTGTTG
CTATATTTCCCTCGTGTCCGACGTCAAAACCGTGTTGGGTATTTTGTCCC
ATCGTCGTTTATCTGTTCGCACAATGTGCAGAAGCATCTGGTCTGGTACT
TTGCCATGGGTATTTTTTTTGTCCAAAGCACTTCATCGTTGGTACGGTCG
AATCTGTCAAACCGTTTCGGGCAGATTAATTTTTTCTAGACACAGAGATT
TTGGTGTTTAATCGTAATCGCGAACTTTTGTTTTTTTTTGTACACATTCG
CGAGTATTTTTGTTTGTCGTGTACGTGTGGTCCCTTTTATTTCTTCCTAT
ATCTTGGCTCTCTTTTTTTTCTCCAACTTCTGTTGTGGGGGGAAACAGGC
GATGAACGTCGCCGGGCAGCCGGTTCACGCTATGATGCCAGGAATACCCG
GGATCCAGGGGTATGTCCGCAGTCCAATGGCAGGACAG GTGTGTCTGTGT
TGTGTATATGTGTGTAGGGTGGCTTGCGAGAAATTGAACCGCAGCGTAAT
TCCTGTCCGCCAAGCCAAGCTGCCGCGTGAGCCTAATGGAGACCGACTCT
CCATCCTCCCTCCCTCCCTCCCTCCTTCCTCTTGTTGCCCTGGAGGTCAC
TACCCACGAAATGTGAAACGCTTTCATCCCCTTCCATCCGCCAAACCTTT
GCTTTTCTTTCGTTGGATAATATCCGTGCTTATCGGATTCTTGAAAAGAC
CTTCATCGACCACTACCACCACTACGACAGCCTCTTTTTCTAATGCAGTT
ATCTGTGCTCCTCGTCATGGTCGCTTTCTCTGTGTTCGCCCGTTTCAACA
AAACAGCCGTCTAAATACATATACGCACATAGTCACTCATATTTTCATGT
ATCAACAACGAACAAACAAGAAACGCGATGCGCTGCTGCTCTGCTGATTC
TGTCGCTGCTACTGCTGCAACACCAAAAAAGCAACAGCAAGCGGGAATGA
TGGTCATGCAATCCCCTCAGCCATGGCAGCAAGTCCACATAGATCCCCAA
ACCCAGGCCATGGCAGCGGCTGCCGGAGGCGGACTTCCTCCGGTAGCCTA
CGGTGCGGGCCCCACAACCGGTCCCCATGGGCTATACACCCACAGTTACG
TGGATCCGGCTCAAGCGGCGGCAGCTGCCTCCGCCGGAGGCTCCCCCGGC
GGGATGGGGGTAATTGTTCCGGGGGCAGGGGTACGTGGAGTTCCTATGGC
GGGCGGCCCAGGGTCAGTCATGGCTCACCAGTTGCAGCAGCAGCAGCAGT
CGTCGCACTCGAGGGGACACCAAGGGCAGCAACTGGTTCAGCAGCATCCC
CAGCCTCATGCCCACCACACCCAGCAGCAGCAGCAGCAGCAGCAAGCGAT
GACGGCTTACATGGCTCAGGGACAGCAGCAAGGCCAAGCGCAGCAGTCAG
CGGGTCAAGCGCAGCAGCAACAGGGCATGGCTGGCGTTGTTCAGTCTTCG
CCGCAGCAGCAGCATGCGGCCGGGCAACAGGCTGGACAACTGTTGCGCCA
GCAGCAGCAGCAGCAGCAACAGCAGCAGCAAATGCAAACGGGCGGCGCAG
CGGCCGCCGGTATACCCATGTCTGGCGGTTACATGACAGCACAAGACTAT
TACGGTGCTCAGGCGGCTCAGCAGCATGCCTGGTGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig13350:4801..6986+
>mRNA_H-paniculata_contig13350.2095.1 ID=mRNA_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at H-paniculata_contig13350:4801..6986+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top