mRNA_H-paniculata_contig13347.2093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13347.2093.1
Unique NamemRNA_H-paniculata_contig13347.2093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: D7G1F6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.460e-7
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   28 QEFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGL---RANKDTQNPTVEAATAEGQETEVAGE 225
            Q F++M+V+ELK EL+ RGL VSG+K+VLIQRL D+++ L    A    + PT    +++G   E++ E
Sbjct:    4 QAFEDMRVVELKVELKARGLPVSGLKAVLIQRLHDHDNSLVEKLAQAKDEEPTAAVKSSDGAGAELSPE 72          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A5C6NSK6_9TELE (Myocardin (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NSK6_9TELE)

HSP 1 Score: 54.3 bits (129), Expect = 1.830e-6
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    4 VPSQNG-VLQEFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQE 207
            VP + G +L   D+M+V+ELK+EL+ RGL VSG K+ L++RL+ Y+D  +   +T + T    T  G E
Sbjct:  263 VPGKPGNLLPNLDDMRVVELKSELKQRGLTVSGSKNELVERLRSYQDLKKGCGNTSSLTAGGTTGSGAE 331          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A668RGB7_OREAU (SAP domain-containing protein n=31 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A668RGB7_OREAU)

HSP 1 Score: 52.8 bits (125), Expect = 6.850e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   37 DNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQE 207
            D MKV ELK+EL++R L VSG K+ LI+RL+ Y++  R +  T +PT    T  G E
Sbjct:  370 DEMKVAELKSELKLRNLPVSGTKNDLIERLRTYQELSRGSDTTSSPTAGCTTGPGAE 426          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: UPI0008540F4E (MKL/myocardin-like protein 2 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008540F4E)

HSP 1 Score: 51.6 bits (122), Expect = 1.740e-5
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   13 QNGVL--------QEFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATA 195
            QNGV            D+MKV ELK EL++RGL VSG K+ LI+RL+ Y+D      +  N T  A TA
Sbjct:  378 QNGVQFKKAGPLPSNLDDMKVAELKMELKLRGLPVSGTKTELIERLKPYQDLNNNGVNANNATAVATTA 446          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A484CL68_PERFV (SAP domain-containing protein n=11 Tax=Percidae TaxID=8165 RepID=A0A484CL68_PERFV)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    7 PSQNGVLQEFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQE 207
            P    +    D MKV ELK+EL++R L VSG K+ LI+RL+ Y++    +  T +PT   AT  G E
Sbjct:  421 PKPTFLPPNLDEMKVAELKSELKLRSLPVSGTKNDLIERLRTYQELNGVSDTTSSPTAGGATGPGAE 487          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A7M4FT48_CROPO (Myocardin related transcription factor B n=6 Tax=Longirostres TaxID=1298654 RepID=A0A7M4FT48_CROPO)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-5
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   37 DNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQET 210
            D++KV ELK EL++RGL VSG K+ LI+RL+ Y+D L  N  T + T   AT+ G+ T
Sbjct:  408 DDLKVAELKMELKLRGLPVSGTKTDLIERLKPYQD-LNNNGVTTSNTTTTATSTGEVT 464          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: UPI00097D00E6 (MKL/myocardin-like protein 2 isoform X1 n=6 Tax=Pleuronectoidei TaxID=30942 RepID=UPI00097D00E6)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-5
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 GVLQ-EFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATA 195
            GVL    + MKV ELK EL++RGL VSG K+ LI+RL+ ++D LR +  T  P     T+
Sbjct:  403 GVLPANLEEMKVAELKLELKLRGLPVSGTKTDLIERLKPFQDNLRTSAPTSIPQPTTTTS 462          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A151N1K1_ALLMI (MKL/myocardin-like protein 2 isoform A n=9 Tax=Crocodylia TaxID=1294634 RepID=A0A151N1K1_ALLMI)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-5
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   37 DNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQET 210
            D++KV ELK EL++RGL VSG K+ LI+RL+ Y+D L  N  T + T   AT+ G+ T
Sbjct:  411 DDLKVAELKMELKLRGLPVSGTKTDLIERLKPYQD-LNNNGVTTSNTTTTATSTGEVT 467          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: A0A6P8SYM2_GEOSA (myocardin-related transcription factor B isoform X2 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SYM2_GEOSA)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-5
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   37 DNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQETEVAGE 225
            D+MKV ELK EL++RGL VSG K+ LI+RL+ Y+D    +  T N T  A TA    T  AGE
Sbjct:  401 DDMKVAELKMELKLRGLPVSGTKTDLIERLKPYQDCHNNSATTGNAT--ATTASTVATSCAGE 461          
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Match: UPI00155E5BAE (myocardin-related transcription factor A-like isoform X1 n=2 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155E5BAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.390e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   37 DNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLRANKDTQNPTVEAATAEGQETEVAGEQHPAKIT 246
            D MKV ELK+EL++R L VSG K  LI+RL+ Y++    +  T +PT   AT  G E      +  A IT
Sbjct:  406 DEMKVAELKSELKLRSLPVSGTKIDLIERLRTYQELNGGSDTTSSPTAGGATGPGAEGTAKSSKSAASIT 475          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13347.2093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F6_ECTSI5.460e-743.48Elongation of fatty acids protein n=2 Tax=Ectocarp... [more]
A0A5C6NSK6_9TELE1.830e-642.03Myocardin (Fragment) n=1 Tax=Takifugu flavidus Tax... [more]
A0A668RGB7_OREAU6.850e-647.37SAP domain-containing protein n=31 Tax=Pseudocreni... [more]
UPI0008540F4E1.740e-544.93MKL/myocardin-like protein 2 n=1 Tax=Nanorana park... [more]
A0A484CL68_PERFV1.750e-541.79SAP domain-containing protein n=11 Tax=Percidae Ta... [more]
A0A7M4FT48_CROPO2.380e-550.00Myocardin related transcription factor B n=6 Tax=L... [more]
UPI00097D00E62.380e-546.67MKL/myocardin-like protein 2 isoform X1 n=6 Tax=Pl... [more]
A0A151N1K1_ALLMI2.380e-550.00MKL/myocardin-like protein 2 isoform A n=9 Tax=Cro... [more]
A0A6P8SYM2_GEOSA2.380e-550.79myocardin-related transcription factor B isoform X... [more]
UPI00155E5BAE2.390e-542.86myocardin-related transcription factor A-like isof... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13347contigH-paniculata_contig13347:396..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.9691691-CDS-H-paniculata_contig13347:395..6771622929057.9691691-CDS-H-paniculata_contig13347:395..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13347 396..677 +
1691480715.0948956-CDS-H-paniculata_contig13347:395..6771691480715.0948956-CDS-H-paniculata_contig13347:395..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13347 396..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13347.2093.1prot_H-paniculata_contig13347.2093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13347 396..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13347.2093.1

>prot_H-paniculata_contig13347.2093.1 ID=prot_H-paniculata_contig13347.2093.1|Name=mRNA_H-paniculata_contig13347.2093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
HVPSQNGVLQEFDNMKVIELKAELRMRGLMVSGVKSVLIQRLQDYEDGLR
ANKDTQNPTVEAATAEGQETEVAGEQHPAKITPEKSAGGSGTVD
back to top

mRNA from alignment at H-paniculata_contig13347:396..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13347.2093.1 ID=mRNA_H-paniculata_contig13347.2093.1|Name=mRNA_H-paniculata_contig13347.2093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig13347:396..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGTACCGTCACAAAACGGGGTGCTGCAGGAGTTCGACAACATGAAGGT GATTGAACTGAAGGCGGAGCTAAGAATGCGAGGTCTTATGGTAAGCGGGG TTAAATCCGTCCTTATACAACGCCTGCAAGACTACGAAGACGGGTTGCGG GCCAACAAGGACACCCAGAACCCGACGGTGGAAGCGGCGACGGCGGAAGG TCAAGAGACAGAAGTTGCCGGTGAACAACACCCCGCCAAGATAACACCGG AAAAATCTGCAGGAGGATCTGGCACGGTTGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13347:396..677+

>mRNA_H-paniculata_contig13347.2093.1 ID=mRNA_H-paniculata_contig13347.2093.1|Name=mRNA_H-paniculata_contig13347.2093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig13347:396..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGTACCGTCACAAAACGGGGTGCTGCAGGAGTTCGACAACATGAAGGT
GATTGAACTGAAGGCGGAGCTAAGAATGCGAGGTCTTATGGTAAGCGGGG
TTAAATCCGTCCTTATACAACGCCTGCAAGACTACGAAGACGGGTTGCGG
GCCAACAAGGACACCCAGAACCCGACGGTGGAAGCGGCGACGGCGGAAGG
TCAAGAGACAGAAGTTGCCGGTGAACAACACCCCGCCAAGATAACACCGG
AAAAATCTGCAGGAGGATCTGGCACGGTTGATCACGTACCGTCACAAAAC
GGGGTGCTGCAGGAGTTCGACAACATGAAGGTGATTGAACTGAAGGCGGA
GCTAAGAATGCGAGGTCTTATGGTAAGCGGGGTTAAATCCGTCCTTATAC
AACGCCTGCAAGACTACGAAGACGGGTTGCGGGCCAACAAGGACACCCAG
AACCCGACGGTGGAAGCGGCGACGGCGGAAGGTCAAGAGACAGAAGTTGC
CGGTGAACAACACCCCGCCAAGATAACACCGGAAAAATCTGCAGGAGGAT
CTGGCACGGTTGAT
back to top