mRNA_H-paniculata_contig1334.2089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1334.2089.1
Unique NamemRNA_H-paniculata_contig1334.2089.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1334.2089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1334contigH-paniculata_contig1334:5570..6696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1334.2089.1prot_H-paniculata_contig1334.2089.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1334 5588..6696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.3304083-UTR-H-paniculata_contig1334:5569..55871622929057.3304083-UTR-H-paniculata_contig1334:5569..5587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1334 5570..5587 +
1691480714.9090908-UTR-H-paniculata_contig1334:5569..55871691480714.9090908-UTR-H-paniculata_contig1334:5569..5587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1334 5570..5587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.3461769-CDS-H-paniculata_contig1334:5587..56501622929057.3461769-CDS-H-paniculata_contig1334:5587..5650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1334 5588..5650 +
1691480714.923365-CDS-H-paniculata_contig1334:5587..56501691480714.923365-CDS-H-paniculata_contig1334:5587..5650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1334 5588..5650 +
1622929057.3576543-CDS-H-paniculata_contig1334:6546..66961622929057.3576543-CDS-H-paniculata_contig1334:6546..6696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1334 6547..6696 +
1691480714.933504-CDS-H-paniculata_contig1334:6546..66961691480714.933504-CDS-H-paniculata_contig1334:6546..6696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1334 6547..6696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1334.2089.1

>prot_H-paniculata_contig1334.2089.1 ID=prot_H-paniculata_contig1334.2089.1|Name=mRNA_H-paniculata_contig1334.2089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MQHRGRGKGTHYITSQLQQAQQQHQPVASAAPTLAQAQTSASVAQAHVNI
QNQANDQAPTKAQAAQTSAPA
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mRNA from alignment at H-paniculata_contig1334:5570..6696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1334.2089.1 ID=mRNA_H-paniculata_contig1334.2089.1|Name=mRNA_H-paniculata_contig1334.2089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1127bp|location=Sequence derived from alignment at H-paniculata_contig1334:5570..6696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCTATCCTTGGGGACATGCAACATCGCGGCCGTGGCAAGGGTACACA
CTACATCACCTCGCAACTTCAGCAAGCCCAGGTATGGTGCAGCAGGTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTTTTGTTGTTTTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT
ACTGGTTGTGGTGTCGTTGTCGTTGTTGTTGTTTTATTGCTATTGCTGCT
GTTGCTGCTGTTGCTGCTGCTGTTGCTGTAACTCCGTTGCTTTTGGTGGT
GGCGCTGGGGCTGGTGGTGCGTTGACTTCTTTTTGCTGCTCATGCTGGTG
GTGCCGGTGATAGTGTTCTGTGATAAGCGCCAAATGTGATGGACTATTCA
TTTTTGCATCCTTGGTGATGCTGCTGACTGGTCGAAATGCTATCGTTGCA
TCTGCGGAGCGGTTGCGTAGACATGGTAACGTGGATCGTGCGCTGTTTTA
TGTGTAGGGTTGGCATTCGGCAAGGAAAATTCGGCTAGTCCAATTGTGTT
GACTAGCTAAAGCCTTGAAGCAAACATATAGCACACAGCGCTTGTTTGTA
CCCGCCATTCACGTACTCGTGGGCACGTGTAGAGCGACAAACCTTATCTT
TTTTGCACCGTGAGGATTTGTCGTGTGTGCGTACGCCTTGTGTAGTCCAC
GCACAGCACCGTGAGCCGTTCAGTGCGGCCTCTCGAAACGCACTATTTTG
TTTCCGATGAAAAGTGCGTGCTATGCTTCTGCGTATGACCCATTGACAAT
AGCACCCATTTTTGCCCTCGCCGCCAAATGGTCCTGTACCTCTTCGGCCG
TCACACGCCCTCAGAAAGGCCTGCAAACGTTGATCATTTGTTTTTTCGTA
TGTGTTTTGTTTTCCTCGCGGAAGCAGCAGCAACATCAGCCAGTAGCCTC
GGCGGCGCCAACGCTGGCTCAAGCTCAAACGAGTGCTTCAGTCGCCCAAG
CACATGTCAATATTCAAAATCAAGCCAACGATCAAGCGCCCACCAAAGCC
CAGGCAGCACAAACGAGCGCTCCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1334:5570..6696+

>mRNA_H-paniculata_contig1334.2089.1 ID=mRNA_H-paniculata_contig1334.2089.1|Name=mRNA_H-paniculata_contig1334.2089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig1334:5570..6696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACATCGCGGCCGTGGCAAGGGTACACACTACATCACCTCGCAACT
TCAGCAAGCCCAGATGCAACATCGCGGCCGTGGCAAGGGTACACACTACA
TCACCTCGCAACTTCAGCAAGCCCAGCAGCAACATCAGCCAGTAGCCTCG
GCGGCGCCAACGCTGGCTCAAGCTCAAACGAGTGCTTCAGTCGCCCAAGC
ACATGTCAATATTCAAAATCAAGCCAACGATCAAGCGCCCACCAAAGCCC
AGGCAGCACAAACGAGCGCTCCAGCGCAGCAACATCAGCCAGTAGCCTCG
GCGGCGCCAACGCTGGCTCAAGCTCAAACGAGTGCTTCAGTCGCCCAAGC
ACATGTCAATATTCAAAATCAAGCCAACGATCAAGCGCCCACCAAAGCCC
AGGCAGCACAAACGAGCGCTCCAGCG
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