prot_H-paniculata_contig1333.2085.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1333.2085.1
Unique Nameprot_H-paniculata_contig1333.2085.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length124
Homology
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.880e-68
Identity = 102/123 (82.93%), Postives = 111/123 (90.24%), Query Frame = 0
Query:    1 MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNTPVDAMSAAIEDLSQEMESLQAMFQDQVVIAKQNMEQEEYGS 123
            MNAPERSE WRLNDDEKKLAYTPDTKIPHAGTF I+KEDHTLGNLLRMQLLADRQVRFAGYMQPHPL N I++KVQTNGDNTPVDA+SAA EDLSQEME L+ +FQ+QV  AK   EQE++GS
Sbjct:    1 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 123          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 9.510e-54
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 0
Query:   17 KKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNTPVDAMSAAIEDLSQEMESLQAMFQDQVVIAKQNMEQEEYGS 123
            ++LAYTPDTKIPHAGTF I+KEDHTLGNLLRMQLLADRQVRFAGYMQPHPL N I++KVQTNGDNTPVDA+SAA EDLSQEME L+ +FQ+QV  AK   EQE++GS
Sbjct:   64 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 170          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.560e-48
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 0
Query:    1 MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNTPVDAMSAAIEDLSQEMESLQAMFQDQVVIAKQNMEQEEY 121
            MNAPERSE WRLN+ E+K+ Y PDTKIP+AG F I KEDHTLGNL+RMQLL DRQVRFAGY+ PHPL N++ VKVQTNG+ TP+DA+S AIEDL+ E+++L   F + V+  K+  E  +Y
Sbjct:    1 MNAPERSESWRLNEGEEKVDYEPDTKIPNAGNFIIKKEDHTLGNLIRMQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A6U1NZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZH5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.010e-36
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 0
Query:    1 MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNT-PVDAMSAAIEDLSQEMESLQAMFQDQVVIAKQN 115
            MNA +RS+ +RL + EKKL Y PDTKIP+AGTF + +EDHTLGNLLRMQLL D  VRFAGY  PHPL++ + VK+QT      P+ AMS +IEDLS E + L+  F++ +   KQ+
Sbjct:    1 MNAQDRSQSYRLAEGEKKLTYEPDTKIPNAGTFTLNREDHTLGNLLRMQLLQDSSVRFAGYQHPHPLVHHLLVKIQTTDPPANPIQAMSTSIEDLSSEFDFLEQRFKEDIDRFKQD 116          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 128 bits (321), Expect = 7.870e-36
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 0
Query:    2 NAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNT-PVDAMSAAIEDLSQEMESL 101
            N PERS+ + L DDE+K+ Y PDTK+ +AGTF + KEDHT+GNLLRMQLL D QV+FAGYM PHPL+N I++KVQT+     P +++SAAIEDLS E + L
Sbjct:    3 NRPERSDAFLLGDDEEKIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A7R9U3J4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3J4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.670e-35
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 0
Query:    1 MNAPERSECWR--LNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNTPVDAMSAAIEDLSQEMESLQAMFQDQV 109
            MNAP+RSECW     D+E K+ Y  DTKIP+AGTF I++EDHTLGNLLRM+LL D+ VRFAGY+ PHPL ++I ++VQ   + TP+ +++ A++ L Q+ ++L   F+ QV
Sbjct:    1 MNAPDRSECWTSGYEDEENKVTYQKDTKIPNAGTFTIMREDHTLGNLLRMELLKDQNVRFAGYIAPHPLEHVIKLRVQAADNVTPIRSVTQAVDHLQQQFDTLSKSFESQV 111          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A7S2NUR5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUR5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.330e-34
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    2 NAPERSECWRLNDD--EKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDN-TPVDAMSAAIEDLSQEMESLQAMFQD 107
            NAPERS C+ L++D  E K+ YTPDTK+ +AG F I KEDHTLGNLLRMQLL + +VRF+GY  PHPLI+++ +KVQT+  N +PV+ +SAAIEDLS E + L+   +D
Sbjct:    3 NAPERSACFLLDEDAGEVKITYTPDTKVANAGMFIINKEDHTLGNLLRMQLLRNPEVRFSGYRIPHPLIHLVELKVQTSSGNVSPVEVVSAAIEDLSNESDHLETAARD 111          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: F0Y9X2_AURAN (RNA_pol_L_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9X2_AURAN)

HSP 1 Score: 124 bits (312), Expect = 1.580e-34
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 0
Query:    1 MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDN-TPVDAMSAAIEDLSQEMESLQAMFQDQVVIAK 113
            MNAPER + ++L+DDEK++ Y  D KIP+AGTF I KEDHT+GNLLRMQ+L     +FAGY  PHPL+N   VK+QT   N TP+ A   AIEDL  EM+ L   F++QV   K
Sbjct:    1 MNAPERHKKYQLDDDEKRMTYKNDEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGAFQRAIEDLQSEMDILDRNFREQVAKKK 114          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: B8C993_THAPS (Probable dna-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C993_THAPS)

HSP 1 Score: 124 bits (312), Expect = 1.890e-34
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 0
Query:    1 MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNT-PVDAMSAAIEDLSQEMESLQAMFQDQV 109
            MNAPERS  + L+DDE+K+ Y PDTK+ +AGTF   KEDHT+ NLLRMQLL D  V+FAGYM PHPLI+ I++K+QT      P + +SAAIEDLS E + L     D +
Sbjct:    1 MNAPERSSAFLLDDDEEKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHLLTQVTDAI 110          
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Match: A0A7R9WNF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNF7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.130e-34
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    1 MNAPERSECWRLNDD--EKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLINMINVKVQTNGDNT-PVDAMSAAIEDLSQEMESLQAMFQDQV 109
            MNAPER+  + L++D  E K+ YT DTK+ +AGTF + KEDHT+GNL RMQLL D  VRFAGY  PHPL++ +N+K+QTN     PV+ +S+AIEDLS E + L + FQ+ +
Sbjct:    1 MNAPERTAAFLLDEDLGEVKIEYTADTKVTNAGTFKLNKEDHTVGNLFRMQLLRDPSVRFAGYYHPHPLVHFLNMKIQTNNSTVAPVEVLSSAIEDLSNETDHLTSQFQEAI 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1333.2085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST3_9PHAE2.880e-6882.93RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
D7G4D0_ECTSI9.510e-5479.44RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A836CIX8_9STRA2.560e-4863.64Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
A0A6U1NZH5_9STRA3.010e-3656.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0SS38_THAOC7.870e-3661.39RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
A0A7R9U3J4_9STRA2.670e-3553.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2NUR5_9STRA1.330e-3458.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0Y9X2_AURAN1.580e-3455.26RNA_pol_L_2 domain-containing protein n=1 Tax=Aure... [more]
B8C993_THAPS1.890e-3456.36Probable dna-directed RNA polymerase II 13.6 kDa p... [more]
A0A7R9WNF7_9STRA2.130e-3454.46Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..117
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 1..117
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 32..102
e-value: 6.8E-26
score: 89.9
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..120
e-value: 1.8E-41
score: 142.4
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 1..108
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 35..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1333contigH-paniculata_contig1333:7881..14249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1333.2085.1mRNA_H-paniculata_contig1333.2085.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1333 6354..14259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1333.2085.1 ID=prot_H-paniculata_contig1333.2085.1|Name=mRNA_H-paniculata_contig1333.2085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MNAPERSECWRLNDDEKKLAYTPDTKIPHAGTFHIVKEDHTLGNLLRMQL
LADRQVRFAGYMQPHPLINMINVKVQTNGDNTPVDAMSAAIEDLSQEMES
LQAMFQDQVVIAKQNMEQEEYGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR036603RBP11-like
IPR008193RNA_pol_Rpb11_13-16kDa_CS