mRNA_H-paniculata_contig13320.2077.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13320.2077.1
Unique NamemRNA_H-paniculata_contig13320.2077.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13320.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13320contigH-paniculata_contig13320:3421..4263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.7449327-CDS-H-paniculata_contig13320:3420..34841622929055.7449327-CDS-H-paniculata_contig13320:3420..3484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13320 3421..3484 +
1691480714.360427-CDS-H-paniculata_contig13320:3420..34841691480714.360427-CDS-H-paniculata_contig13320:3420..3484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13320 3421..3484 +
1622929055.7599554-CDS-H-paniculata_contig13320:4108..42631622929055.7599554-CDS-H-paniculata_contig13320:4108..4263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13320 4109..4263 +
1691480714.3684762-CDS-H-paniculata_contig13320:4108..42631691480714.3684762-CDS-H-paniculata_contig13320:4108..4263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13320 4109..4263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13320.2077.1prot_H-paniculata_contig13320.2077.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13320 3421..4263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13320.2077.1

>prot_H-paniculata_contig13320.2077.1 ID=prot_H-paniculata_contig13320.2077.1|Name=mRNA_H-paniculata_contig13320.2077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
TNNADSPDLLHLHTYLFAQKRDFDPIATGIYRKNKTTAITWGDTSPAPSC
HWLWFYLSPPEPQRPAAPFRRR*
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mRNA from alignment at H-paniculata_contig13320:3421..4263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13320.2077.1 ID=mRNA_H-paniculata_contig13320.2077.1|Name=mRNA_H-paniculata_contig13320.2077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig13320:3421..4263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACAACGCGGACTCACCTGACCTACTCCATCTGCACACGTATTTATT
TGCGCAGAAAAGAGGTGAGTAAGAGTTGATGGGCGTAGCATTGATTTGGC
AATCGATGAATGCCTGGGGTTGTATGATCTTGGACAAGAATTGAAGTGTC
ATCAATAATTGGGATTTGGGGCCTGTCTGTGTTTCCACTTGGTTGCTACC
TCGTAGGGTATCTATGCTATAGTTGTCCTTGCTGGTTTTCGTGTGTTTTT
CAGCTCACTCGTGGGCGCACGGACAGGTTGTAACTGAGTCCATTGGTCTA
ATGGGAATACTGTACTCTGCCAAAAACGAGATAGGACACTCGTACGCTCT
TCCATGGCACACTAAATGTTCGGGGTTAGCGATTAGGTTCGTTGGGCACT
ACTCTAACGCTCTGCCAGTGACCAATATTCAAAGTTGTATGGCATAGTTT
GTGCGGGTTGAAGGAAGCTTCGAAATATTTCGCTATGTTTGTCCGCTGAG
GTCAATCTCAACACGGGTTGCGGGGTCTAAATTACAACCATTTCCGAAAG
AGTTCCCTTATATATCAAGCTACTCAGGATGCAACGTGCGCCGTTGGCCT
CCCCGTTTTTTATGCCCGTACCTGTCGGTACGTGTCGATTCCCATACTAC
CGCTCGCCCTTGTTCGTGTCCTATGATGCTTCTACAAGATTTCGATCCAA
TAGCAACAGGGATTTATCGTAAAAACAAAACCACTGCGATAACATGGGGC
GACACGTCTCCGGCGCCGTCCTGCCACTGGCTATGGTTCTACTTGTCACC
GCCCGAACCTCAGCGGCCGGCTGCCCCTTTTCGGCGAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13320:3421..4263+

>mRNA_H-paniculata_contig13320.2077.1 ID=mRNA_H-paniculata_contig13320.2077.1|Name=mRNA_H-paniculata_contig13320.2077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig13320:3421..4263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACAACGCGGACTCACCTGACCTACTCCATCTGCACACGTATTTATT
TGCGCAGAAAAGAGACAAACAACGCGGACTCACCTGACCTACTCCATCTG
CACACGTATTTATTTGCGCAGAAAAGAGATTTCGATCCAATAGCAACAGG
GATTTATCGTAAAAACAAAACCACTGCGATAACATGGGGCGACACGTCTC
CGGCGCCGTCCTGCCACTGGCTATGGTTCTACTTGTCACCGCCCGAACCT
CAGCGGCCGGCTGCCCCTTTTCGGCGAAGGTGAATTTCGATCCAATAGCA
ACAGGGATTTATCGTAAAAACAAAACCACTGCGATAACATGGGGCGACAC
GTCTCCGGCGCCGTCCTGCCACTGGCTATGGTTCTACTTGTCACCGCCCG
AACCTCAGCGGCCGGCTGCCCCTTTTCGGCGAAGGTGA
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