mRNA_H-paniculata_contig1330.2069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1330.2069.1
Unique NamemRNA_H-paniculata_contig1330.2069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A6H5KV34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV34_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 6.410e-42
Identity = 140/417 (33.57%), Postives = 188/417 (45.08%), Query Frame = 3 
Query:   75 GSVSTLNGEAPREYPKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLED-VESCTLSGSTPLSVAVEHGYPDVVDELLAKGVSVDRRDAASRQSLLGNAVIANTSLQNRVRLVRSLLRAGADPNGVTACTGGGTAATASEAVATAERMENGTTQVQVTPCPQSCYRQGKEIKRAENPQGGAEIYDSFTPLHHACRVVGGVDVVEVLLGAGADADGLAGREANVSAAGPGVQCPGCSVRPLHIAAAHGNATVVRALTWKGCRLDAETPDPS---RSTPLALAVQGGHLEATRALVEAGASIQAVPRREDGTQLAPSLARMAARMKRGDLVSVLTAALVKRDCAESWIIEWASEVNGKSPEQVIGTAGGIGANGSEAGGVETGEDEEQ 1313
            G+ +T+         ++ GRTPLH+AA NG V   RVLL AGA   H  N ++ESPLL+AA+GGHAEVV LLLE LG    V + T +G TPL VA+ +G+ D+V +++  GV  D+            A+  +    +RV                                                  P       K + + +NP G         PLH ACR  GG  +VE LL  GAD         N S                           V ALT +GC LD +T DPS    STPL +AVQ           +AGA+I AVPR +DG + A SLAR+AA M+RGD+V++L  A+V RD +E+W  EWA+    +         GG+ A     GG + G +EE+
Sbjct:  586 GTAATIRRGGGSPNRRKEGRTPLHFAAMNGSVGAARVLLAAGAPPAHRRNRKRESPLLLAAKGGHAEVVELLLEALGPGGHVNAATAAGDTPLGVALANGHGDIVVQVIGWGVRDDK------------ALCLDIGRDDRVP-------------------------------------------------PLDLTNVLKTLPK-DNPAGAGTARVLSAPLHAACRG-GGRTLVEALLEKGADV--------NASRDPXXXXXXXXXXXXXXXXXXXXXXEAVGALTLRGCLLDVKTRDPSGWVSSTPLGIAVQEXXXXXXXXXXDAGAAIDAVPRGQDGKERATSLARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFR--------VGGLSAAAGAVGGADVGAEEEE 923
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: D7FVK0_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK0_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 8.500e-42
Identity = 135/382 (35.34%), Postives = 174/382 (45.55%), Query Frame = 3 
Query:   75 GSVSTLNGEAPREYPKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGL-EDVESCTLSGSTPLSVAVEHGYPDVVDELLAKGVSVDRRDAASRQSLLGNAVIANTSLQNRVRLVRSLLRAGADPNGVTACTGGGTAATASEAVATAERMENGTTQVQVTPCPQSCYRQGKEIKRAENPQGGAEIYDSFTPLHHACRVVGGVDVVEVLLGAGADADGL---AGREANVSAAGPGVQCPGCSVRPLHIAAAHGNATVVRALTWKGCRLDAETPDPSRSTPLALAVQGGHLEATRALVEAGASIQAVPRREDGTQLAPSLARMAARMKRGDLVSVLTAALVKRDCAESWIIEWAS 1208
            G+ +T+         ++ GRTPLH+AA NGRV   RVLL AGA   H  N ++ES         HAEVV LLLE L     V++ T +G TPL VA  +G+ DVV +LL KG +V  RD  +    LG            V  +++LL+                                                        +NP G         PLH ACR  GG  +VE LL  GAD +     AG E                +RPLH+AAAHGNA  V ALT +GC LD +T DPS STPL                       AVPR +DG + A SLAR+AA M+RGD+V+++  A+V RD +E+W IEWA+
Sbjct:  588 GTAATVRRGVASPNRRKEGRTPLHFAAMNGRVGAARVLLAAGAPPAHRRNRKRESXXXXXXXXXHAEVVELLLEALRPGTHVDAATAAGETPLGVASANGHDDVVVQLLRKGAAVVGRDDKAPCLDLGWXXXXXXXXLTSV--LKTLLK--------------------------------------------------------DNPAGAGTARVLSAPLHAACRG-GGRTLVEALLEKGADVNASQDPAGEEEGRRR----------MLRPLHVAAAHGNAEAVGALTLQGCLLDVKTRDPSGSTPLXXXXXXXXXXXXXXXXXXXXXXXAVPRGQDGKERATSLARLAADMRRGDMVALMARAIVDRDSSETWAIEWAA 900
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A4U7ARC8_9PEZI (Ankyrin repeat-containing protein 25 n=1 Tax=Elsinoe australis TaxID=40998 RepID=A0A4U7ARC8_9PEZI)

HSP 1 Score: 77.4 bits (189), Expect = 2.860e-11
Identity = 47/114 (41.23%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:  117 PKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLEDVESCTLSGSTPLSVAVE--HGYPDVVDELLAKGVSVDRRDAASRQSLL 452
            P   G TPLH AA    +ETVR+LL+AGA V    + +K +PL  AA+ GH  V+ LLL  +G+ +V +  L G TPL +AV+      D V  LL  G   D  D      LL
Sbjct:  953 PTNWGMTPLHRAARTSSLETVRMLLDAGADVNQQDDLKKRTPLHEAAKAGHPPVMQLLLSHVGIVNVNATDLKGQTPLHLAVQVTDANEDNVKLLLESGAQADLIDETGTTPLL 1066
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A166LSU7_9AGAM (Ankyrin (Fragment) n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166LSU7_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 1.210e-9
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:  123 RLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQ--LGLEDVESCTLSGSTPLSVAVEHGYPDVVDELLAKG 407
            +LG T LH+A+SNG  + V +LL+ GA +     EQ ++PLL A    H + + LL  +   G+ DV  C   G+TPLS+A E G+ ++V  LLA G
Sbjct:   26 KLGYTALHFASSNGYTDIVELLLDHGAAIDAIA-EQHKTPLLCALAHNHHDTISLLFARGATGI-DVNMCFSDGTTPLSLASEAGFLEIVTVLLALG 120
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A0R3SDP3_HYMDI (ANK_REP_REGION domain-containing protein n=3 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SDP3_HYMDI)

HSP 1 Score: 67.8 bits (164), Expect = 1.630e-8
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  129 GRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLEDVESCTLSGSTPLSVAVEHGYPDVVDELL-AKGVSVDRRDAASRQSLLGNAVIANTSLQNRVRLVRSLLRAGADPN 536
            G T LH+AA+ G +E V  L+E G V     NE +E+PL++AA+ GHA++V LLL+ LG          G +PL+ A      DV+  LL +K   + +R+         NA ++ +SL+    +   LL  GAD N
Sbjct:  212 GNTALHWAAARGHLECVSGLIEYG-VPLDPMNECEETPLMLAAQNGHADIVNLLLK-LGASSNFELNRFGDSPLTFACFKAREDVISILLNSKHRPIGKREL--------NAALSRSSLRGSAAVTEMLLERGADVN 338
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A8H6MUW5_9PEZI (Uncharacterized protein n=1 Tax=Colletotrichum sojae TaxID=2175907 RepID=A0A8H6MUW5_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 4.470e-7
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:  123 RLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQL 302
            RLG TPLH AA +G +E++ +LL AGA +T    E+K++PL++AA GGH +++  LLE L
Sbjct:  212 RLGETPLHDAAWSGSIESLELLLNAGADITVASEEEKDTPLILAAMGGHVDIMTRLLECL 271
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: UPI001D1A4692 (LOW QUALITY PROTEIN: ankyrin-1-like n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A4692)

HSP 1 Score: 62.8 bits (151), Expect = 5.270e-7
Identity = 71/225 (31.56%), Postives = 96/225 (42.67%), Query Frame = 3 
Query:  141 LHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLEDVESCTLSGSTPLSVAVEHGYPDVVDELLAKGVSVDRRDAASRQSLLGNAVIANTSLQNRVRLVRSLLRAGADPNGVTACTGGGTAATASEAVATAERMENGTTQVQVTPCPQSCYRQGKE-----IKRAENPQGGAEIYDSFTPLHHACRVVGGVDVVEVLLGAGAD 800
            LH AA+NGR    R L++   +     ++++E+PLL+AA  GH      LLE+       +  + G TPL  A  +G  D+V  LL KG  V    A  R + L  A     +++    +VR LLR GADPN V                  A R+         TP   S      +     I+   N   GA  +   TPL  AC   G V  V+ LL AGAD
Sbjct:   28 LHLAATNGRTNVCRYLVQDLGIPVDTLSDERETPLLLAATFGHTATAAWLLERGA--SARAPDVDGETPLQWAAYNGDRDLVMLLLYKGADVGA--ANPRGTALHVA-----AMRGCPEVVRVLLRHGADPNKV------------------ASRV--------FTPLVPSLLGGSLQCMKLLIEAGANVHAGA--FSGATPLLLACSHRGNVGFVKCLLKAGAD 215
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A1L9WGZ6_ASPA1 (Uncharacterized protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A1L9WGZ6_ASPA1)

HSP 1 Score: 63.5 bits (153), Expect = 6.610e-7
Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 3 
Query:  117 PKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLEDVESCTLSGSTPLSVAVEHGYPDVVDELLAKGVSV 416
            P   G TPLH+AA  G    V +LL   ++  +  +  + +PL +AAR GH +V+  L+++ G  D E+ ++ G  P+S+A ++ +  VV+ L  KG ++
Sbjct:  982 PDLEGYTPLHHAAEKGHSAVVSMLLRETSIAVNSKSRTQATPLWLAARNGHLDVLKALIKRGG--DTEARSIDGQAPISIARQNKHEKVVNLLFGKGSTI 1079
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A319DAK7_9EURO (Ankyrin (Fragment) n=2 Tax=Aspergillus TaxID=5052 RepID=A0A319DAK7_9EURO)

HSP 1 Score: 62.4 bits (150), Expect = 9.950e-7
Identity = 48/151 (31.79%), Postives = 69/151 (45.70%), Query Frame = 3 
Query:   84 STLNGEAPREYPKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLE-----------------------------------QLGLEDVESCTLSGSTPLSVAVEHGYPDVVDELLAKG-VSVDRRD 428
            S L+ +   E     G T LHYAA  G  E V+  L+ G     D N+  ++PL +AA  GHA+VV  LL+                                   QL   DVE+    G TP+ +AV+ GY DVV+EL+ +G + ++RR+
Sbjct:  268 SVLDDDEIMEDCLHTGNTALHYAAQYGHGEAVQWCLKEG-FKPDDRNKNDQTPLFLAASSGHADVVHKLLDLDFDRAETALEPKPERSADKGSDXXXXXXXXWFAMQLATVDVEADDYRGRTPMLMAVQRGYLDVVEELMRRGDLLINRRN 417
[Close]
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Match: A0A7S3XQ24_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ24_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-6
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 3 
Query:   96 GEAPREYPKRLGRTPLHYAASNGRVETVRVLLEAGAVVTHDGNEQKESPLLVAARGGHAEVVGLLLEQLGLEDVESCTLSGSTPLSVAVEHGYPDVVDELL 398
            G  P   P   G T LH+AAS GR+ +++VLLE  A   H  N    S L +A + GH EV   L+++   + + +   +G TPL    EHG+ ++ D LL
Sbjct:   40 GGVPVNEPDEHGMTALHHAASLGRINSMKVLLERNAD-PHAMNTDNLSALHLACKAGHLEVCKELIQK-DKDTIFAKDANGRTPLMTVAEHGHAELADYLL 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1330.2069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV34_9PHAE6.410e-4233.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVK0_ECTSI8.500e-4235.34Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A4U7ARC8_9PEZI2.860e-1141.23Ankyrin repeat-containing protein 25 n=1 Tax=Elsin... [more]
A0A166LSU7_9AGAM1.210e-941.24Ankyrin (Fragment) n=1 Tax=Peniophora sp. CONT Tax... [more]
A0A0R3SDP3_HYMDI1.630e-835.77ANK_REP_REGION domain-containing protein n=3 Tax=H... [more]
A0A8H6MUW5_9PEZI4.470e-750.00Uncharacterized protein n=1 Tax=Colletotrichum soj... [more]
UPI001D1A46925.270e-731.56LOW QUALITY PROTEIN: ankyrin-1-like n=1 Tax=Hordeu... [more]
A0A1L9WGZ6_ASPA16.610e-733.00Uncharacterized protein n=2 Tax=Aspergillus TaxID=... [more]
A0A319DAK7_9EURO9.950e-731.79Ankyrin (Fragment) n=2 Tax=Aspergillus TaxID=5052 ... [more]
A0A7S3XQ24_HETAK1.020e-636.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1330contigH-paniculata_contig1330:4292..7904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue3.4e-23
Seed eggNOG ortholog2880.D7FVK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-15_003590.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1422
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1330.2069.1prot_H-paniculata_contig1330.2069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1330 4365..6626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.557597-UTR-H-paniculata_contig1330:4291..43641622929054.557597-UTR-H-paniculata_contig1330:4291..4364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 4292..4364 -
1691480713.9121513-UTR-H-paniculata_contig1330:4291..43641691480713.9121513-UTR-H-paniculata_contig1330:4291..4364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 4292..4364 -
1622929054.611604-UTR-H-paniculata_contig1330:6626..68391622929054.611604-UTR-H-paniculata_contig1330:6626..6839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 6627..6839 -
1691480713.9397042-UTR-H-paniculata_contig1330:6626..68391691480713.9397042-UTR-H-paniculata_contig1330:6626..6839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 6627..6839 -
1622929054.6291761-UTR-H-paniculata_contig1330:7512..79041622929054.6291761-UTR-H-paniculata_contig1330:7512..7904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 7513..7904 -
1691480713.947792-UTR-H-paniculata_contig1330:7512..79041691480713.947792-UTR-H-paniculata_contig1330:7512..7904Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 7513..7904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.5786474-CDS-H-paniculata_contig1330:4364..47371622929054.5786474-CDS-H-paniculata_contig1330:4364..4737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 4365..4737 -
1691480713.9239404-CDS-H-paniculata_contig1330:4364..47371691480713.9239404-CDS-H-paniculata_contig1330:4364..4737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 4365..4737 -
1622929054.5941987-CDS-H-paniculata_contig1330:6255..66261622929054.5941987-CDS-H-paniculata_contig1330:6255..6626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 6256..6626 -
1691480713.9317257-CDS-H-paniculata_contig1330:6255..66261691480713.9317257-CDS-H-paniculata_contig1330:6255..6626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 6256..6626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1330.2069.1

>prot_H-paniculata_contig1330.2069.1 ID=prot_H-paniculata_contig1330.2069.1|Name=mRNA_H-paniculata_contig1330.2069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MENGTTQVQVTPCPQSCYRQGKEIKRAENPQGGAEIYDSFTPLHHACRVV
GGVDVVEVLLGAGADADGLAGREANVSAAGPGVQCPGCSVRPLHIAAAHG
NATVVRALTWKGCRLDAETPDPSRSTPLALAVQGGHLEATRALVEAGASI
QAVPRREDGTQLAPSLARMAARMKRGDLVSVLTAALVKRDCAESWIIEWA
SEVNGKSPEQVIGTAGGIGANGSEAGGVETGEDEEQQEAVKNGSLCS*
back to top

mRNA from alignment at H-paniculata_contig1330:4292..7904-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1330.2069.1 ID=mRNA_H-paniculata_contig1330.2069.1|Name=mRNA_H-paniculata_contig1330.2069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3613bp|location=Sequence derived from alignment at H-paniculata_contig1330:4292..7904- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCGGGGATGAGGAGAGGGTCAAGGGTGGCGATGACGGCGACGGTTGC
CGCGGCGACGGCGGCGGCGGCAACGGTAGTGTGAGTACCTTGAATGGGGA
AGCCCCGAGAGAGTACCCGAAAAGGTTAGGGCGGACGCCGCTGCACTATG
CCGCGTCGAACGGGCGGGTGGAGACTGTGCGAGTTTTGCTGGAGGCCGGG
GCCGTTGTGACTCATGATGGGAACGAGCAAAAGGAGTCTCCGCTACTTGT
GGCGGCGCGGGGAGGGCACGCAGAGGTCGTCGGGCTGTTGCTCGAGCAGC
TTGGGCTGGAGGACGTGGAGTCGTGTACGTTGTCTGGGAGCACGCCCCTA
AGCGTTGCGGTGGAACACGGGTATCCCGATGTGGTGGACGAGGTGATAGT
TGCTCGAGTTGCTGGATATTTTGTTAGTGGGCAGGTCATACAAACAGCTA
CGCCAGTGGCGCGTGACATGTGACAACTAAGAGACGTGGATAAAGAATGA
AAAATGTTTCTAGATAAATGTCATCATCGTCATCGTCACCGTCACCATAT
TAAAAAACATAAAACTACATTTGTTCATGAACTTACCACTATGTCGTCGG
CGACGCTTTTTTTTGTTGATATCTCGCGTTTCTTGGTTGAATACTTTGTC
GCTGCCGACTTTGCAGCTGCGCTACGATTGTATTGCTGGTTTGAGTGTAT
GCTGATTTTTCAATGTAATGACATTTGTTCGAACTTTTCATTTTTTAATT
GCCTCGAATGTATGCTTTTGGCCTAAAGCTATTCAATCATCGTGTGGTGC
GTACTTAGATCAGTGGTCCTATTTGGATGATGACTTCGTCTGTACGAATG
TAGGAATGTAGGAATGACATACGACGTTTCATTTTTTCGAAGATTGTGCA
AAGTGACAGAACATGGCTCCGTGTTCTATACACGACACACCAGCAATCTA
GTCCTACAGACACTCTGCGTAGCCCCCTTCTCCTCCCTACCCTACTCCGT
CGACTTCGGCCTAACCCCTCATGCTTTCTGCAACAATTCGCCCGACCCTC
CGCGAAATCCAATAGCTCCTCGCAAAAGGCGTCAGCGTCGACCGGCGAGA
TGCTGCCTCCCGCCAGTCCCTCCTTGGTAACGCCGTTATTGCCAACACCT
CTCTACAAAACCGGGTACGTCTGGTACGTTCTCTCTTGCGAGCGGGCGCC
GATCCCAACGGCGTTACTGCATGCACGGGGGGGGGGACAGCGGCGACGGC
ATCGGAAGCGGTGGCGACGGCGGAACGGATGGAGAATGGCACGACTCAGG
TTCAGGTCACTCCGTGCCCCCAGTCTTGTTACAGGCAAGGAAAGGAGATA
AAACGGGCCGAAAACCCACAAGGTGGGGCAGAAATATATGATTCTTTTAC
TCCACTTCACCATGCGTGTAGAGTGGTTGGAGGGGTAGATGTGGTGGAGG
TGTTGCTAGGAGCAGGGGCGGACGCCGATGGACTCGCGGGGCGTGAGGCG
AACGTGTCGGCGGCCGGGCCGGGTGTGCAGTGTCCCGGGTGTTCGGTGCG
GCCCTTGCACATCGCTGCGGCGCATGGCAATGCTACCGTAGTCCGCGCGT
TGACTTGGAAGGGCTGCAGGCTTGATGCAGAGACGCCGGATCCCAGCAGG
TGGGGTTTGAGGGTGATGACGAATCGCAAACGGTACGAAGCTTGACGCAT
CTAAGGAGTGCGAGCGGTGTTCGTGGCAGTTGGCTTCCATATTGCGCTTG
TCTGCGTTTTTTTCGGGTGTTAGCTTCCATGACTGGAGTGTGCTTGAGTC
TAGTCTTTTGGAAATTGAAGCTGGCAATCCTCGAATGCAATCATCTGATT
TTAATAATCAGTAGCTGCCAGTAGCAGATGTTGTCAGGTTGCTGCAAAAT
TGACAATAACGTGGGCCCGTGTGCGGCGTAGCGTCGAATCTACCGAAGTG
TAATGTCTGCTCGCGAGGGAACATGTTGAGACGCAATTTTATCTAGATGA
ACCGCTACTCTTTCATGACCCTATTGGTACTTGGTTGTCCCTTGTAGCGC
CGGTTCCCATCCTTAGCTAGTTTTTAGCGAAAACAAAGGAAAACGACGCG
TACCACACGAGTGCCGCGATAGGGAGTCACCGCTTACAGGCAGACATTCC
AATCAGCACAGAGAAGCAGTGGGCACAGTTTGATATATATTATATATCTT
TTGATACGACCGTTGTTCCGAGATAGCCTCTTTGAACAACTCAATTTATT
TTCAAAGGCGCTAGAGTAAGGGTTGAGGGTGTACTTGCGGTACATTGCAG
TACTTGCAGTGTATACCGAAGATCTACCCGTCTACGGGGTACATCACTCT
CTTGTGTTATGGATGTCTTGCTTTTTTATTACACTATTTTATTATGTTAT
CATTTTTTTTTCGTAATCTACACTGCTTGTGACTCCCCAATAGCCGTGTC
CTTGGACAGGCCTTGCCAAGATCCGTCGATAGACGGGCGTTCGCGAGAGC
ACAGTACCTGTCGTCTCGAGGAAATTTATTCAGAAAAAAGGATGGCTGTG
TTACTTGCTTATCTCTGTTTTCCTCCTGGAGCACTGGGCGAGCTTCGAGT
GCTGTTGCTAGCTTCAAGAAAGCGTTGTAGTGAGGGAGAGGCGTCGAAAA
AATCGCGACCCTTTCACGAGAAAGTCGCTGAGATCATTCGAATATCGAAA
GAGTATGGCCTGACTCACCATAGCGTACCGCGTAACTCGAACACCGAATA
CGGTATACCGTATACCGTATACCGGAAAACAATGATCAAGATGAAAACCG
TACCGTTTTTGCTAGATTCAAATACCATTACCGAGGGGACCCTGGTAAAA
ATCAACCCCTTTTAGCACCAGTCCTCCTAAATTCGCGATCTAATCCCTAC
ATAAAAAATAGGGGAAAACGAAGCCTGTATAATGACCTAACAGACATCAT
TACTGGGAGGGGGAGCCGCCATTCTTCTCACAGGCAGTTCAGTACTGACG
AAACATCACAGCATAGACACGTAATAGCCACCGTTTTCCAACAACGAATG
CAGCGTTCCAACGTCTGTTTTTTTCCAGTGCCTCTTCCTCTCCGAAGCAG
CCTCTTGAAAGGCACCCGTTCCCTTCCCTCCTCGGTCTGTCCCGATTTCC
CGGCGGCTATCTTCCAGAAGTACGCCCTTAGCGCTCGCCGTGCAGGGCGG
CCACTTGGAAGCAACGAGGGCTTTGGTCGAGGCCGGCGCGAGCATCCAAG
CGGTACCTCGCCGAGAAGACGGAACGCAGCTCGCTCCCTCACTAGCGCGC
ATGGCCGCTCGCATGAAGCGGGGAGATTTGGTGTCGGTGCTGACGGCGGC
ATTGGTGAAAAGGGATTGCGCGGAGAGCTGGATTATAGAGTGGGCTAGTG
AGGTGAACGGCAAGAGCCCGGAACAGGTGATAGGGACGGCGGGGGGTATC
GGGGCAAACGGCAGCGAGGCAGGTGGTGTTGAGACGGGAGAGGACGAAGA
GCAACAGGAAGCAGTCAAGAACGGTAGTCTGTGTTCTTGATTGCGGACAC
GTTAGGGAGAGAAAGAGGAGGATAGGGCTGTGCTGTGTGTACGGGAGATT
TCTCCAAACTCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1330:4292..7904-

>mRNA_H-paniculata_contig1330.2069.1 ID=mRNA_H-paniculata_contig1330.2069.1|Name=mRNA_H-paniculata_contig1330.2069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig1330:4292..7904- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAATGGCACGACTCAGGTTCAGGTCACTCCGTGCCCCCAGTCTTG
TTACAGGCAAGGAAAGGAGATAAAACGGGCCGAAAACCCACAAGGTGGGG
CAGAAATATATGATTCTTTTACTCCACTTCACCATGCGTGTAGAGTGGTT
GGAGGGGTAGATGTGGTGGAGGTGTTGCTAGGAGCAGGGGCGGACGCCGA
TGGACTCGCGGGGCGTGAGGCGAACGTGTCGGCGGCCGGGCCGGGTGTGC
AGTGTCCCGGGTGTTCGGTGCGGCCCTTGCACATCGCTGCGGCGCATGGC
AATGCTACCGTAGTCCGCGCGTTGACTTGGAAGGGCTGCAGGCTTGATGC
AGAGACGCCGGATCCCAGCAGATGGAGAATGGCACGACTCAGGTTCAGGT
CACTCCGTGCCCCCAGTCTTGTTACAGGCAAGGAAAGGAGATAAAACGGG
CCGAAAACCCACAAGGTGGGGCAGAAATATATGATTCTTTTACTCCACTT
CACCATGCGTGTAGAGTGGTTGGAGGGGTAGATGTGGTGGAGGTGTTGCT
AGGAGCAGGGGCGGACGCCGATGGACTCGCGGGGCGTGAGGCGAACGTGT
CGGCGGCCGGGCCGGGTGTGCAGTGTCCCGGGTGTTCGGTGCGGCCCTTG
CACATCGCTGCGGCGCATGGCAATGCTACCGTAGTCCGCGCGTTGACTTG
GAAGGGCTGCAGGCTTGATGCAGAGACGCCGGATCCCAGCAGAAGTACGC
CCTTAGCGCTCGCCGTGCAGGGCGGCCACTTGGAAGCAACGAGGGCTTTG
GTCGAGGCCGGCGCGAGCATCCAAGCGGTACCTCGCCGAGAAGACGGAAC
GCAGCTCGCTCCCTCACTAGCGCGCATGGCCGCTCGCATGAAGCGGGGAG
ATTTGGTGTCGGTGCTGACGGCGGCATTGGTGAAAAGGGATTGCGCGGAG
AGCTGGATTATAGAGTGGGCTAGTGAGGTGAACGGCAAGAGCCCGGAACA
GGTGATAGGGACGGCGGGGGGTATCGGGGCAAACGGCAGCGAGGCAGGTG
GTGTTGAGACGGGAGAGGACGAAGAGCAACAGGAAGCAGTCAAGAACGGT
AGTCTGTGTTCTTGAAAGTACGCCCTTAGCGCTCGCCGTGCAGGGCGGCC
ACTTGGAAGCAACGAGGGCTTTGGTCGAGGCCGGCGCGAGCATCCAAGCG
GTACCTCGCCGAGAAGACGGAACGCAGCTCGCTCCCTCACTAGCGCGCAT
GGCCGCTCGCATGAAGCGGGGAGATTTGGTGTCGGTGCTGACGGCGGCAT
TGGTGAAAAGGGATTGCGCGGAGAGCTGGATTATAGAGTGGGCTAGTGAG
GTGAACGGCAAGAGCCCGGAACAGGTGATAGGGACGGCGGGGGGTATCGG
GGCAAACGGCAGCGAGGCAGGTGGTGTTGAGACGGGAGAGGACGAAGAGC
AACAGGAAGCAGTCAAGAACGGTAGTCTGTGTTCTTGA
back to top