mRNA_H-paniculata_contig1330.2068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1330.2068.1
Unique NamemRNA_H-paniculata_contig1330.2068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1330.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1330contigH-paniculata_contig1330:3431..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size785
Cds size516
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.4974115-UTR-H-paniculata_contig1330:3430..36991622929054.4974115-UTR-H-paniculata_contig1330:3430..3699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 3431..3699 +
1691480713.8958693-UTR-H-paniculata_contig1330:3430..36991691480713.8958693-UTR-H-paniculata_contig1330:3430..3699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1330 3431..3699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.512141-CDS-H-paniculata_contig1330:3699..42151622929054.512141-CDS-H-paniculata_contig1330:3699..4215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 3700..4215 +
1691480713.903754-CDS-H-paniculata_contig1330:3699..42151691480713.903754-CDS-H-paniculata_contig1330:3699..4215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1330 3700..4215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1330.2068.1prot_H-paniculata_contig1330.2068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1330 3700..4215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1330.2068.1

>prot_H-paniculata_contig1330.2068.1 ID=prot_H-paniculata_contig1330.2068.1|Name=mRNA_H-paniculata_contig1330.2068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
MSRHTLPSLHSTIVHSYKRRREAHAHAHKLSCRSMAWSINRVNWVATLSS
TSQQRTPVTTLRSRTSNGVEKAATRRPTVPAAAVALVVTLERILRLKNWP
IRKLRAPFPFLSSIWSTHFRLCIATTTTTREKTPAQRRERARKKKKRDEN
PPKKSSCITLLVTSVTRASLP*
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mRNA from alignment at H-paniculata_contig1330:3431..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1330.2068.1 ID=mRNA_H-paniculata_contig1330.2068.1|Name=mRNA_H-paniculata_contig1330.2068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=785bp|location=Sequence derived from alignment at H-paniculata_contig1330:3431..4215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGACCGAGTACCTACCAGTCCTGTAGACCTCACACGAGACATTTTTT
TGGTACGTAGTATCGCGCACAGAATAATGATCATTCAACGCGCCCACAAT
CCGTTTCGGGCAAGAGTCGGCAGGGGGCGACTGCTTGCCTCTATACAGGT
CATCCTCCAAAACCTAAGAGAAAATCCTCTTCCGGACTTTCGCAGTTCAT
TTCAGGGCCACACTCGGCGTTACAACCCCATGACAAATATCATCAACACT
ACACTGCACCTTTCTGCTAATGAGTAGACACACTTTGCCCTCTCTCCATT
CAACAATTGTCCATTCCTACAAACGACGCAGAGAAGCACACGCACACGCA
CACAAACTTTCGTGCCGGTCCATGGCTTGGTCAATAAACAGAGTAAACTG
GGTAGCTACGCTCTCGAGCACGTCTCAACAACGAACGCCAGTCACAACAC
TTCGTTCAAGAACATCGAACGGCGTAGAAAAGGCAGCAACACGAAGACCC
ACAGTACCAGCAGCAGCAGTAGCACTAGTGGTAACACTAGAGAGAATTCT
CCGTTTAAAAAATTGGCCAATCAGAAAACTGCGGGCACCTTTTCCCTTTC
TCTCTAGTATTTGGAGCACCCACTTCCGTTTGTGTATTGCCACAACAACA
ACAACTCGCGAAAAAACTCCAGCCCAACGCAGAGAGAGGGCACGCAAAAA
AAAAAAGAGAGACGAAAATCCCCCAAAAAAATCATCGTGCATCACCCTCC
TTGTTACCTCTGTGACAAGGGCCTCTCTCCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1330:3431..4215+

>mRNA_H-paniculata_contig1330.2068.1 ID=mRNA_H-paniculata_contig1330.2068.1|Name=mRNA_H-paniculata_contig1330.2068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig1330:3431..4215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAGACACACTTTGCCCTCTCTCCATTCAACAATTGTCCATTCCTA
CAAACGACGCAGAGAAGCACACGCACACGCACACAAACTTTCGTGCCGGT
CCATGGCTTGGTCAATAAACAGAGTAAACTGGGTAGCTACGCTCTCGAGC
ACGTCTCAACAACGAACGCCAGTCACAACACTTCGTTCAAGAACATCGAA
CGGCGTAGAAAAGGCAGCAACACGAAGACCCACAGTACCAGCAGCAGCAG
TAGCACTAGTGGTAACACTAGAGAGAATTCTCCGTTTAAAAAATTGGCCA
ATCAGAAAACTGCGGGCACCTTTTCCCTTTCTCTCTAGTATTTGGAGCAC
CCACTTCCGTTTGTGTATTGCCACAACAACAACAACTCGCGAAAAAACTC
CAGCCCAACGCAGAGAGAGGGCACGCAAAAAAAAAAAGAGAGACGAAAAT
CCCCCAAAAAAATCATCGTGCATCACCCTCCTTGTTACCTCTGTGACAAG
GGCCTCTCTCCCGTGAATGAGTAGACACACTTTGCCCTCTCTCCATTCAA
CAATTGTCCATTCCTACAAACGACGCAGAGAAGCACACGCACACGCACAC
AAACTTTCGTGCCGGTCCATGGCTTGGTCAATAAACAGAGTAAACTGGGT
AGCTACGCTCTCGAGCACGTCTCAACAACGAACGCCAGTCACAACACTTC
GTTCAAGAACATCGAACGGCGTAGAAAAGGCAGCAACACGAAGACCCACA
GTACCAGCAGCAGCAGTAGCACTAGTGGTAACACTAGAGAGAATTCTCCG
TTTAAAAAATTGGCCAATCAGAAAACTGCGGGCACCTTTTCCCTTTCTCT
CTAGTATTTGGAGCACCCACTTCCGTTTGTGTATTGCCACAACAACAACA
ACTCGCGAAAAAACTCCAGCCCAACGCAGAGAGAGGGCACGCAAAAAAAA
AAAGAGAGACGAAAATCCCCCAAAAAAATCATCGTGCATCACCCTCCTTG
TTACCTCTGTGACAAGGGCCTCTCTCCCGTGA
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