mRNA_H-paniculata_contig133.2067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 174 bits (441), Expect = 6.160e-46 Identity = 93/221 (42.08%), Postives = 144/221 (65.16%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMSWHRK--PGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 R+ETV ++K L +L H +L+N E++ R+ P + TPLSL RA+KL ++LPALL S DG+ +R++R+ A+ RG IS LPWL+ Y +AA++R R V + D++++A ACRH GG+ +AARALL++ +P N++T+ ++ AKF ED+ A+ A A AIA S G WRP++ +P+ LI ++ +++ S G+DG RFSHL+ I Sbjct: 349 RFETVKKIKPWLASDHARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSI 569
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 164 bits (414), Expect = 2.330e-42 Identity = 88/221 (39.82%), Postives = 136/221 (61.54%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 R++TV +V+ +L H L+N +++ TPLS R +KL ++LP +L S DG+ +R+ R+ ++ RG IS VLPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 179 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 399
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.660e-41 Identity = 86/220 (39.09%), Postives = 135/220 (61.36%), Query Frame = 1 Query: 4 YETVVQVKQGLQCRQIQLFLHCTDLLNHEMSWHRKPGAET--PLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 ++TV +V+ +L H L+N +++ + T PLS R +K ++LP +L S DG+ +R+ R+ ++ RG IS VLPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 250 FQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGAPLSTIRVIKRWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 469
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE) HSP 1 Score: 154 bits (390), Expect = 6.510e-41 Identity = 79/179 (44.13%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 121 TPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 TPLS R +KL ++LP +L S DG+ +R+ R+ ++ RG IS VLPWLI YT+AA+AR R + D+++ AA ACRH GG+ +AA ALL+D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 195 TPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIEYTKAASARSRGPAPEDTPDDKFKTAAQACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 373
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.120e-40 Identity = 93/244 (38.11%), Postives = 140/244 (57.38%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI------RRDDSRVMLDSARNLGK 708 R++TV +V+ +L H L+N +++ TPLS R +KL ++LP +L DG+ +R+ R+ ++ R IS VLPWLI YT+AA+AR R D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ +V +++ S G+DG RFSHL+ I R + S M R L K Sbjct: 178 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHFFDGRIARKHRYKSLKREDISSVLPWLIEYTKAASARSRGPAREDRPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIK 421
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.330e-40 Identity = 86/221 (38.91%), Postives = 132/221 (59.73%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 R++TV +V+ +L H L+N +++ TPLS R +KL ++LP +L S DG+ +R+ R+ RG IS LPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF +ED + A A AIAASR G WRP+ +P L+ ++ +++ G+DG RFSHL+ I Sbjct: 186 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNWFKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFTREDPVQVEQANAEAIAASRTEEEEGSAPRWRPETEFDPRVLLQVINSRSSNFGAGNDGRRFSHLKSI 406
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 157 bits (396), Expect = 5.140e-40 Identity = 86/221 (38.91%), Postives = 134/221 (60.63%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 R++TV +V+ L H L+N +++ TPLS R +KL ++LP +L S DG+ +R+ R+ ++ RG IS VLPWLI T+AA+AR R + + D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF ED + A A A AASR G WRP+ +P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 200 RFQTVKKVQPRFASDHACLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLPGILHSFDGRIARKKRYNSLKRGDISSVLPWLIECTKAASARSRGSAREDTPDDKFKRAAQACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 420
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5KQQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ8_9PHAE) HSP 1 Score: 149 bits (376), Expect = 4.400e-39 Identity = 83/221 (37.56%), Postives = 129/221 (58.37%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 R++TV +V+ +L H L+N +++ TPLS R + L ++LP +L S DG+ +R+ R ++ RG IS LPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARAL +D+ + N++T+ + A+F ED + A A AIAASR G WRP+ P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 164 RFQTVKKVQPRYASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVITLWYLLPGILHSFDGRIARKKRHKSLKRGDISSALPWLIEYTKAASARSRGPAREDTPDDKFKRAAQACRHSGGVKDAARALFADQPSLGNDETWACLKAEFPHEDPVQVEQAVAEAIAASRTEEEGGSAPRWRPETEFAPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 384
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 130 bits (327), Expect = 8.510e-31 Identity = 79/218 (36.24%), Postives = 119/218 (54.59%), Query Frame = 1 Query: 1 RYETVVQVKQGLQCRQIQLFLHCTDLLNHEMS--WHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHL 648 R++TV +V+ +L H L+N +++ TPLS R +KL ++LP G IS VLPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARALL+D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ ++ +++ S G+DG FSHL Sbjct: 170 RFQTVKKVQPRFASDHARLQTHVLHLVNKQLAEGGGASSATGTPLSTIRVIKLWYLLP---------------------GVISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQCFSHL 366
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 128 bits (321), Expect = 5.990e-30 Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 226 NRGGISVVLPWLIAYTEAAAARRRSTVGSTSTVDRYRKAAAACRHKGGISNAARALLSDELAPANEDTFGKVSAKFGQEDAPAMAAAKAAAIAASRDSLAAGGDTAWRPDDRCNPETLIAIVK*KNALSTVGSDGLRFSHLQCI 657 RG IS VLPWLI YT+AA+AR R + D++++AA ACRH GG+ +AARALL D+ +P N++T+ ++ AKF ED + A A AIAASR G WRP+ +P+ L+ ++ +++ S G+DG RFSHL+ I Sbjct: 264 KRGDISSVLPWLIEYTKAASARSRGPAREDTPDDKFKRAARACRHSGGVKDAARALLVDQTSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSI 407 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig133.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig133.2067.1 >prot_H-paniculata_contig133.2067.1 ID=prot_H-paniculata_contig133.2067.1|Name=mRNA_H-paniculata_contig133.2067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp MSWHRKPGAETPLSLPRAVKLNHVLPALLLSTDGQFSRRDRFLAVNRGGIback to top mRNA from alignment at H-paniculata_contig133:42609..43368+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig133.2067.1 ID=mRNA_H-paniculata_contig133.2067.1|Name=mRNA_H-paniculata_contig133.2067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig133:42609..43368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig133:42609..43368+ >mRNA_H-paniculata_contig133.2067.1 ID=mRNA_H-paniculata_contig133.2067.1|Name=mRNA_H-paniculata_contig133.2067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig133:42609..43368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |