mRNA_H-paniculata_contig13299.2064.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13299.2064.1
Unique NamemRNA_H-paniculata_contig13299.2064.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.130e-10
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNA 180
            W+    E+  LASLARR+L   A  AQ ER FSSAGL++TK R R+DP+N+ L+V L+N 
Sbjct:  484 WRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A818J104_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A818J104_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 2.310e-9
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAW 183
            W EH D+  +LA +A+ +L   A+ A+ ER FSSAG I+T+IR+ LDPD++  LV LK A+
Sbjct:  540 WNEHKDDLWILARIAKSVLVIPASSAESERHFSSAGQIVTEIRSSLDPDHVEALVVLKEAY 600          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.240e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAWEMVE 195
            WK++  E+  +  LA+R+L+  A  A  ER FS A LI TK R  L PDN+N+LV LK  ++++E
Sbjct:   98 WKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLIE 162          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-7
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAWEMVE 195
            WK++  E+  +  LA+R+L+  A  A  ER FS A LI TK R  L PDN+N+LV LK  ++++E
Sbjct:  165 WKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLIE 229          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A819BUY0_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819BUY0_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 6.260e-7
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAW 183
            W  H D+  LLA +A+ +L   A+ A+ ER FS AG I+T++R+ LDP+ +  LV LK A+
Sbjct:  290 WYSHKDDLSLLAKIAKSVLVIPASSAESERHFSMAGQIVTELRSSLDPEYVEALVVLKEAY 350          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A814M280_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814M280_ADIRI)

HSP 1 Score: 50.8 bits (120), Expect = 1.140e-6
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAW 183
            W +  D   LLA +A+ +L   A+ A+ ER FS AG I+T++R+ LDP+ +  LV LK A+
Sbjct:   19 WHKQKDNLSLLAKIAKSVLVIPASSAESERHFSIAGQIVTELRSSLDPEYVEALVVLKEAY 79          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A0H2RHD7_9AGAM (Cytochrome P450 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RHD7_9AGAM)

HSP 1 Score: 53.1 bits (126), Expect = 1.650e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNA 180
            W  H D++ + ASLAR  LA +A+    ER FSSAG+ ++K RNRL+ D +  L SLK+A
Sbjct:  256 WGLHADDYPVWASLARDYLAIMASSVSSERAFSSAGITISKRRNRLNFDIVEALQSLKSA 315          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A815HX65_9BILA (Hypothetical protein n=10 Tax=Rotaria TaxID=231623 RepID=A0A815HX65_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 4.230e-6
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAW 183
            W+ H D+   LA +A+ +L   A+  + ER FS AG I+T++R+ LDP+ +  LV LK A+
Sbjct:  598 WRNHKDDLSFLAQIAKSVLVIPASSVESERHFSIAGQIVTELRSSLDPNYVEALVVLKEAY 658          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 50.4 bits (119), Expect = 6.550e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSL 171
            WK +   F  LA LARR L   A     ER FS+AGL +T++R+RL PD++N+L+ L
Sbjct:  111 WKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Match: A0A822CAH6_9BILA (Hypothetical protein n=9 Tax=Rotaria TaxID=231623 RepID=A0A822CAH6_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 7.920e-6
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDNLNLLVSLKNAW 183
            WK   D   +LA++A+ L    A+ A+ ER FS AG I+T+ R+ LDPD +  LV LK A+
Sbjct:  605 WKNQKDTINILANIAKSLFVIPASSAESERHFSIAGQIVTEQRSLLDPDTVEALVVLKEAY 665          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13299.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE9.130e-1053.33Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A818J104_9BILA2.310e-949.18Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A7S3PTX0_9STRA7.240e-844.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PUA6_9STRA1.580e-744.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A819BUY0_9BILA6.260e-744.26Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A814M280_ADIRI1.140e-642.62Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A0H2RHD7_9AGAM1.650e-648.33Cytochrome P450 n=1 Tax=Schizopora paradoxa TaxID=... [more]
A0A815HX65_9BILA4.230e-640.98Hypothetical protein n=10 Tax=Rotaria TaxID=231623... [more]
UPI0007B8209D6.550e-647.37zinc finger BED domain-containing protein 1-like n... [more]
A0A822CAH6_9BILA7.920e-644.26Hypothetical protein n=9 Tax=Rotaria TaxID=231623 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13299contigH-paniculata_contig13299:308..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue7e-08
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.7251225-CDS-H-paniculata_contig13299:307..5051622929053.7251225-CDS-H-paniculata_contig13299:307..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13299 308..505 -
1691480713.5984156-CDS-H-paniculata_contig13299:307..5051691480713.5984156-CDS-H-paniculata_contig13299:307..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13299 308..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13299.2064.1prot_H-paniculata_contig13299.2064.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13299 308..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13299.2064.1

>prot_H-paniculata_contig13299.2064.1 ID=prot_H-paniculata_contig13299.2064.1|Name=mRNA_H-paniculata_contig13299.2064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
WKEHCDEFLLLASLARRLLATVAALAQFERPFSSAGLILTKIRNRLDPDN
LNLLVSLKNAWEMVEE
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mRNA from alignment at H-paniculata_contig13299:308..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13299.2064.1 ID=mRNA_H-paniculata_contig13299.2064.1|Name=mRNA_H-paniculata_contig13299.2064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig13299:308..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAGGAACACTGCGACGAATTTCTGCTACTCGCGTCGCTTGCCCGCCG CTTGCTTGCCACCGTGGCAGCACTGGCACAATTTGAACGCCCGTTCTCGA GCGCCGGGCTGATTCTCACCAAGATACGCAACAGACTGGACCCAGACAAC CTCAACCTATTGGTGTCGCTCAAGAACGCGTGGGAAATGGTCGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13299:308..505-

>mRNA_H-paniculata_contig13299.2064.1 ID=mRNA_H-paniculata_contig13299.2064.1|Name=mRNA_H-paniculata_contig13299.2064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig13299:308..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAGGAACACTGCGACGAATTTCTGCTACTCGCGTCGCTTGCCCGCCG
CTTGCTTGCCACCGTGGCAGCACTGGCACAATTTGAACGCCCGTTCTCGA
GCGCCGGGCTGATTCTCACCAAGATACGCAACAGACTGGACCCAGACAAC
CTCAACCTATTGGTGTCGCTCAAGAACGCGTGGGAAATGGTCGAGGAGTG
GAAGGAACACTGCGACGAATTTCTGCTACTCGCGTCGCTTGCCCGCCGCT
TGCTTGCCACCGTGGCAGCACTGGCACAATTTGAACGCCCGTTCTCGAGC
GCCGGGCTGATTCTCACCAAGATACGCAACAGACTGGACCCAGACAACCT
CAACCTATTGGTGTCGCTCAAGAACGCGTGGGAAATGGTCGAGGAG
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