mRNA_H-paniculata_contig13296.2060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13296.2060.1
Unique NamemRNA_H-paniculata_contig13296.2060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13296.2060.1 vs. uniprot
Match: D8LE11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE11_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.160e-31
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 ALWDELQERHGRGVYCMLRKGLQNALLARLARPLDDGRMSKNKVNKIFQVLIRSCFVLHSRGGHGED 201
            ALW ELQ+RH +GVYCMLRKGLQNALL RLARPLD GRMSKNKVNKIFQVLIRSCFVLHSRGGH +D
Sbjct:   48 ALWGELQDRHAQGVYCMLRKGLQNALLVRLARPLDGGRMSKNKVNKIFQVLIRSCFVLHSRGGHVDD 114
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BLAST of mRNA_H-paniculata_contig13296.2060.1 vs. uniprot
Match: A0A6H5L6J3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.350e-22
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   49 MLRKGLQNALLARLARPLDDGRMSKNKVNKIFQVLIRSCFVLHSRGGHGED 201
            MLRKGLQNALL RLARPL+ GRMSKNKVNKIFQVLIRSCFVLHSRGGH +D
Sbjct:    1 MLRKGLQNALLVRLARPLNGGRMSKNKVNKIFQVLIRSCFVLHSRGGHADD 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13296.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE11_ECTSI1.160e-3188.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6J3_9PHAE9.350e-2290.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13296contigH-paniculata_contig13296:2422..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.8e-27
Seed eggNOG ortholog2880.D8LE11
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000981,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002694,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009611,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0014070,GO:0016070,GO:0016071,GO:0016310,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0023014,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0033077,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034612,GO:0034641,GO:0034655,GO:0035019,GO:0035556,GO:0035925,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0045577,GO:0045595,GO:0045596,GO:0045598,GO:0045599,GO:0045619,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0048103,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051254,GO:0051301,GO:0051384,GO:0051716,GO:0051726,GO:0060216,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0070371,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071364,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097011,GO:0097012,GO:0097159,GO:0098727,GO:0140110,GO:1900151,GO:1900153,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902105,GO:1903311,GO:1903313,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000113,GO:2000736,GO:2000737,GO:2001141
EggNOG free text desc.DNA binding
EggNOG OGsKOG1595@1,KOG1595@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.308787-CDS-H-paniculata_contig13296:2422..25241622929053.308787-CDS-H-paniculata_contig13296:2422..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13296 2423..2524 -
1691480713.4220028-CDS-H-paniculata_contig13296:2422..25241691480713.4220028-CDS-H-paniculata_contig13296:2422..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13296 2423..2524 -
1622929053.3296707-CDS-H-paniculata_contig13296:2706..28531622929053.3296707-CDS-H-paniculata_contig13296:2706..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13296 2707..2853 -
1691480713.432425-CDS-H-paniculata_contig13296:2706..28531691480713.432425-CDS-H-paniculata_contig13296:2706..2853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13296 2707..2853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13296.2060.1prot_H-paniculata_contig13296.2060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13296 2423..2853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13296.2060.1

>prot_H-paniculata_contig13296.2060.1 ID=prot_H-paniculata_contig13296.2060.1|Name=mRNA_H-paniculata_contig13296.2060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
ALWDELQERHGRGVYCMLRKGLQNALLARLARPLDDGRMSKNKVNKIFQV
LIRSCFVLHSRGGHGEDGDDELCLHAPLSSSEQ
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mRNA from alignment at H-paniculata_contig13296:2422..2853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13296.2060.1 ID=mRNA_H-paniculata_contig13296.2060.1|Name=mRNA_H-paniculata_contig13296.2060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig13296:2422..2853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGTGGGATGAGCTGCAGGAACGGCATGGTCGGGGGGTGTACTGTAT
GCTTCGGAAGGGTCTACAAAACGCTCTCCTCGCACGGCTTGCTCGCCCTT
TGGACGACGGGCGCATGAGTAAAAACAAGGTCAACAAGATTTTTCAGGTG
AAGGCGTATGTATGTTGTACGTGTGTATCAGCACGTAACGTTCTGCAGTG
TATAATCTTGCCCCGCGTAGTTGTTTTGTCCCTTCTTGGGCAGGTATGTG
GCAGATTTTATTATATCCACACGCACGCACCGCTGTGTACCTCGGCGTTT
TGGGTTGGTTTGCTTTTTTGTTTTTGCAGGTTCTGATTCGATCGTGCTTC
GTTCTGCATTCTCGAGGAGGTCATGGCGAGGACGGTGACGATGAGCTGTG
CCTGCATGCACCCTTATCTAGCAGTGAACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13296:2422..2853-

>mRNA_H-paniculata_contig13296.2060.1 ID=mRNA_H-paniculata_contig13296.2060.1|Name=mRNA_H-paniculata_contig13296.2060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig13296:2422..2853- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTGTGGGATGAGCTGCAGGAACGGCATGGTCGGGGGGTGTACTGTAT
GCTTCGGAAGGGTCTACAAAACGCTCTCCTCGCACGGCTTGCTCGCCCTT
TGGACGACGGGCGCATGAGTAAAAACAAGGTCAACAAGATTTTTCAGGCG
CTGTGGGATGAGCTGCAGGAACGGCATGGTCGGGGGGTGTACTGTATGCT
TCGGAAGGGTCTACAAAACGCTCTCCTCGCACGGCTTGCTCGCCCTTTGG
ACGACGGGCGCATGAGTAAAAACAAGGTCAACAAGATTTTTCAGGTTCTG
ATTCGATCGTGCTTCGTTCTGCATTCTCGAGGAGGTCATGGCGAGGACGG
TGACGATGAGCTGTGCCTGCATGCACCCTTATCTAGCAGTGAACAAGTTC
TGATTCGATCGTGCTTCGTTCTGCATTCTCGAGGAGGTCATGGCGAGGAC
GGTGACGATGAGCTGTGCCTGCATGCACCCTTATCTAGCAGTGAACAA
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