mRNA_H-paniculata_contig13285.2055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13285.2055.1
Unique NamemRNA_H-paniculata_contig13285.2055.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13285.2055.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.600e-6
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = -1 
Query:  177 PATEKCLAEGSRPNPLIHHIGVLQHIFLFAG-DSYLFVAGVSKRWREAWGHNSRKVTAISVAMQSIACVQWAKKCRCPWNETTSKAAASSGRIDVL 461
            P T    +  +  NPL     +L+H+  FA  + +LFVAGVS+ WR+AWG      T +  A+QS + + WA+     W  +    AAS G +  L
Sbjct:  713 PRTRPLSSPSAPVNPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATL 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13285.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE3.600e-634.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13285contigH-paniculata_contig13285:224..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size752
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.3827388-UTR-H-paniculata_contig13285:223..3961622929052.3827388-UTR-H-paniculata_contig13285:223..396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13285 224..396 +
1691480713.1268878-UTR-H-paniculata_contig13285:223..3961691480713.1268878-UTR-H-paniculata_contig13285:223..396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13285 224..396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.3979037-CDS-H-paniculata_contig13285:396..9751622929052.3979037-CDS-H-paniculata_contig13285:396..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13285 397..975 +
1691480713.139169-CDS-H-paniculata_contig13285:396..9751691480713.139169-CDS-H-paniculata_contig13285:396..975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13285 397..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13285.2055.1prot_H-paniculata_contig13285.2055.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13285 397..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13285.2055.1

>prot_H-paniculata_contig13285.2055.1 ID=prot_H-paniculata_contig13285.2055.1|Name=mRNA_H-paniculata_contig13285.2055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MQHINSTAGGCGLGRCLIPRTSALLCPLDTGNRLHRHRNGGDLAAIMAPR
LSPPLGHPGHEQVAVSGEEEDVLQHTDMVDQRIRPRSFGEAFFSSGYMLR
ISSGVYSLRRSARGSTSTLLYVRFNHDRVSCYTARGLRYFYLPVGSLQMA
TFGQFVTTAHCRALRKKHSISTVRRRANARSSTNGTHRTKAL*
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mRNA from alignment at H-paniculata_contig13285:224..975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13285.2055.1 ID=mRNA_H-paniculata_contig13285.2055.1|Name=mRNA_H-paniculata_contig13285.2055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=752bp|location=Sequence derived from alignment at H-paniculata_contig13285:224..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTGGCCCACTTCAACAACTCCAGATGCCCCCCTCTAGCCGCCAGCGT
ACACGTCTGCTCGTCCCACGGAGCGCCATTGGCTCGGCACCACTGCAACA
TCTCTAGCTCCCCCCTCTCAGAGGCAGCCGCACAGGTGCGCGAGTCCCAG
TGGCAGCGCTTGGCTCGGCACCAATGCAGCACATCAATTCGACCGCTGGA
GGCTGCGGCCTTGGACGTTGTCTCATTCCACGGACATCGGCACTTCTTTG
CCCACTGGACACAGGCAATCGACTGCATCGCCACAGAAATGGCGGTGACC
TTGCGGCTATTATGGCCCCACGCCTCTCTCCACCTCTTGGACACCCCGGC
CACGAACAGGTAGCTGTCTCCGGCGAAGAGGAAGATGTGCTGCAGCACAC
CGATATGGTGGATCAGAGGATTAGGCCGAGATCCTTCGGCGAGGCATTTT
TCAGTAGCGGGTACATGCTCAGAATCTCCAGCGGCGTCTACTCGTTGAGG
AGAAGCGCGAGGGGGAGCACCTCCACACTCCTCTACGTCCGCTTTAATCA
TGATAGGGTGTCGTGTTACACAGCTCGTGGTCTGCGTTACTTTTATTTAC
CGGTTGGCTCTTTGCAGATGGCTACGTTTGGTCAGTTCGTAACAACGGCC
CACTGCAGGGCGTTGAGGAAGAAGCATTCAATATCCACAGTCCGACGTCG
AGCCAACGCAAGGAGCTCCACCAACGGAACCCACCGAACGAAGGCCCTCT
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig13285:224..975+

>mRNA_H-paniculata_contig13285.2055.1 ID=mRNA_H-paniculata_contig13285.2055.1|Name=mRNA_H-paniculata_contig13285.2055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig13285:224..975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCACATCAATTCGACCGCTGGAGGCTGCGGCCTTGGACGTTGTCT
CATTCCACGGACATCGGCACTTCTTTGCCCACTGGACACAGGCAATCGAC
TGCATCGCCACAGAAATGGCGGTGACCTTGCGGCTATTATGGCCCCACGC
CTCTCTCCACCTCTTGGACACCCCGGCCACGAACAGGTAGCTGTCTCCGG
CGAAGAGGAAGATGTGCTGCAGCACACCGATATGGTGGATCAGAGGATTA
GGCCGAGATCCTTCGGCGAGGCATTTTTCAGTAGCGGGTACATGCTCAGA
ATCTCCAGCGGCGTCTACTCGTTGAGGAGAAGCGCGAGGGGGAGCACCTC
CACACTCCTCTACGTCCGCTTTAATCATGATAGGGTGTCGTGTTACACAG
CTCGTGGTCTGCGTTACTTTTATTTACCGGTTGGCTCTTTGCAGATGGCT
ACGTTTGGTCAGTTCGTAACAACGGCCCACTGCAGGGCGTTGAGGAAGAA
GCATTCAATATCCACAGTCCGACGTCGAGCCAACGCAAGGAGCTCCACCA
ACGGAACCCACCGAACGAAGGCCCTCTAAATGCAGCACATCAATTCGACC
GCTGGAGGCTGCGGCCTTGGACGTTGTCTCATTCCACGGACATCGGCACT
TCTTTGCCCACTGGACACAGGCAATCGACTGCATCGCCACAGAAATGGCG
GTGACCTTGCGGCTATTATGGCCCCACGCCTCTCTCCACCTCTTGGACAC
CCCGGCCACGAACAGGTAGCTGTCTCCGGCGAAGAGGAAGATGTGCTGCA
GCACACCGATATGGTGGATCAGAGGATTAGGCCGAGATCCTTCGGCGAGG
CATTTTTCAGTAGCGGGTACATGCTCAGAATCTCCAGCGGCGTCTACTCG
TTGAGGAGAAGCGCGAGGGGGAGCACCTCCACACTCCTCTACGTCCGCTT
TAATCATGATAGGGTGTCGTGTTACACAGCTCGTGGTCTGCGTTACTTTT
ATTTACCGGTTGGCTCTTTGCAGATGGCTACGTTTGGTCAGTTCGTAACA
ACGGCCCACTGCAGGGCGTTGAGGAAGAAGCATTCAATATCCACAGTCCG
ACGTCGAGCCAACGCAAGGAGCTCCACCAACGGAACCCACCGAACGAAGG
CCCTCTAA
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