mRNA_H-paniculata_contig13284.2052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13284.2052.1
Unique NamemRNA_H-paniculata_contig13284.2052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A6H5L6Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z3_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.360e-51
Identity = 88/125 (70.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:   16 RYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQGGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGW 390
            RYRG  HA +++V+ EGL G+TRG  AS++RVMVGSA QLS Y+SCK AVL TG+FEDN+YAYLASS VAGLVVTT +NP DVVSTRLY QG GV ERYTG LDCA KT+ AEGFRG+   Y GW
Sbjct:  161 RYRGTWHAFTDIVQKEGLRGLTRGTSASVMRVMVGSATQLSVYSSCKAAVLGTGLFEDNVYAYLASSSVAGLVVTTTMNPLDVVSTRLYAQGTGVAERYTGPLDCAVKTVSAEGFRGL---YKGW 282          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: D8LT33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT33_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 5.210e-43
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   64 GLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQGGGVTERYTGVLDCATKTLKAEGFRGV 369
            GL G+TRG  AS++RVMVGSA QLS Y+SCK AVL TG+FEDN+YAYL+SS+ AGLVVTT +NP DVVSTRLY QG GV ERYTG LDCA KT+ AEGFRGV
Sbjct:  218 GLRGLTRGTSASVMRVMVGSATQLSVYSSCKAAVLGTGLFEDNVYAYLSSSLAAGLVVTTTMNPLDVVSTRLYAQGTGVAERYTGPLDCAVKTVSAEGFRGV 319          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A835YMV3_9STRA (Solute carrier family 25 member 34 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.420e-37
Identity = 73/127 (57.48%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   13 YRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQGGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGWA 393
            + YRGM  A   ++  EG  G+ RGM A++ RVM GSAAQLSSY+SCK  V STG F   +Y Y+ASS+VAGLVVTT +NPFDVVSTRLY+Q       YTG +DC  KT +AEG RG    Y GWA
Sbjct:  129 FHYRGMTDAFRSIIADEGWRGLARGMDAAVPRVMAGSAAQLSSYSSCKRLVQSTGFFHSELYTYIASSLVAGLVVTTVMNPFDVVSTRLYSQSAKHLV-YTGPIDCFKKTFRAEGLRGF---YKGWA 251          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A5D6Y7N2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7N2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.200e-32
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQG--GGVTERYTGVLDCATKTLKAEGFRGVRVGYVGWA 393
            +N +Y Y GM      ++RTEG+ G+ RGM  ++ RV +GS  QL++Y   KT V + G+ ED    +L SS+V+GLVVTTA+NPFDVVSTRLY+Q    G  E YTGV DC  KT +AEG RG    Y GWA
Sbjct:  156 INAQYAYNGMLDGFRHILRTEGVKGLYRGMSGAIPRVSIGSGTQLATYTQAKTLVAAAGI-EDGFQVHLGSSIVSGLVVTTAMNPFDVVSTRLYSQKVVNGKGELYTGVFDCLAKTFRAEGIRGF---YKGWA 284          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A485KSQ5_9STRA (Aste57867_11310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSQ5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.330e-32
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQ----GGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGWA 393
            +N +Y Y+G   A  +++  +G+ G+ RG+  ++ RV VGSAAQLS+Y S K  VLSTG+ ED ++ +LA+S+V GL VTTA+NPFDVVSTRLY+Q    G GV   Y+GVLDC  KT   EG RG+   + GWA
Sbjct:  154 INAQYHYKGTFDAFRQIIAKDGVMGLYRGVNGAIPRVAVGSAAQLSTYASSKHIVLSTGLLEDGVWCHLAASLVTGLAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YSGVLDCFKKTFGVEGVRGL---FKGWA 283          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A6A5AIL5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIL5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.520e-32
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQ----GGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGWA 393
            +N +Y Y+G   AI +++  +G+ G+ RG+  ++ RV VGSAAQLS+Y S K  VLSTG+ ED I  +LA+S+V GL VTTA+NPFDVVSTRLY+Q    G GV   Y+GV+DC  KT  AEG RG+   + GW+
Sbjct:  175 INAQYHYKGTLDAIRQIIAKDGVLGLYRGVNGAVPRVAVGSAAQLSTYASSKHLVLSTGLLEDGILCHLAASLVTGLAVTTAMNPFDVVSTRLYSQKVVNGQGVL--YSGVIDCFKKTFGAEGVRGL---FKGWS 304          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A6G0XPW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPW9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.390e-31
Identity = 67/134 (50.00%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQ----GGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGW 390
            +N +Y YRG   A+ ++V  +G  G+ RG+  ++ RV +GSAAQ+S+Y S K  VLSTG+ ED +  + ASS+V G+ VTTA+NPFDVVSTRLY+Q    G GV   Y+GV+DC  KT  AEG RG+   + GW
Sbjct:  151 INAQYNYRGTFDALRQIVAKDGFVGLYRGVNGAVPRVAIGSAAQMSTYASSKHLVLSTGLLEDGVLCHFASSLVTGVAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YSGVIDCFRKTFGAEGVRGL---FKGW 279          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: W2H888_PHYPR (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=W2H888_PHYPR)

HSP 1 Score: 122 bits (305), Expect = 3.220e-31
Identity = 65/133 (48.87%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQG--GGVTERYTGVLDCATKTLKAEGFRGVRVGYVGWA 393
            +N +Y Y GM     +++R++GL G+ RG  AS+ RV +GS  QL++Y   KT VL+ G FED +  +L SS++ GLVVTTA+NP DVVSTR+Y+Q    G  + Y+GV+DC  KT+K+EG RG    Y GWA
Sbjct:  150 INAQYAYNGMMDGFRQIIRSDGLLGLYRGATASIPRVAIGSGTQLATYTQAKTLVLAAG-FEDGVQVHLGSSILTGLVVTTAMNPMDVVSTRIYSQKVVNGKGKLYSGVMDCIMKTMKSEGVRGF---YKGWA 278          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: K3WA37_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA37_GLOUD)

HSP 1 Score: 121 bits (303), Expect = 8.420e-31
Identity = 66/132 (50.00%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQG--GGVTERYTGVLDCATKTLKAEGFRGVRVGYVGW 390
            +N +Y Y GM     +++RTEG  G+ RGM  ++ RV +GS  QL++Y   KT V++ G+ ED     L SS+V+GLVVTTA+NPFDVVSTRLY+Q    G  E Y GV DC +KT +AEG RG    Y GW
Sbjct:  164 INAQYAYTGMVDGFRQILRTEGPRGLYRGMSGAVPRVSIGSGTQLATYTQAKTLVMAAGI-EDGFQVQLGSSIVSGLVVTTAMNPFDVVSTRLYSQKVVNGKGELYNGVFDCLSKTWRAEGIRGF---YKGW 291          
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Match: A0A1V9Z179_9STRA (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z179_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.150e-31
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNSCKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQ----GGGVTERYTGVLDCATKTLKAEGFRGVRVGYVGW 390
            +N +Y Y+G    + ++V  +G  G+ RG+  ++ RV VGSAAQ+S+Y S K  VLS+G+ ED + A+ A+S+V GL VTTA+NPFDVVSTRLY+Q    G GV   Y GV+DC +KT  AEG RG+   + GW
Sbjct:  150 INAQYHYKGTFDGLRQIVAKDGFSGLYRGINGAIPRVAVGSAAQMSTYASSKHLVLSSGLLEDGVLAHFAASLVTGLAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YDGVVDCFSKTFGAEGVRGM---FKGW 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13284.2052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6Z3_9PHAE3.360e-5170.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT33_ECTSI5.210e-4374.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMV3_9STRA5.420e-3757.48Solute carrier family 25 member 34 n=1 Tax=Tribone... [more]
A0A5D6Y7N2_9STRA1.200e-3251.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485KSQ5_9STRA2.330e-3251.11Aste57867_11310 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A5AIL5_9STRA2.520e-3251.85Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6G0XPW9_9STRA2.390e-3150.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W2H888_PHYPR3.220e-3148.87Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
K3WA37_GLOUD8.420e-3150.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9Z179_9STRA9.150e-3149.25Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13284contigH-paniculata_contig13284:483..1220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog2880.D8LT33
Preferred nameSLC25A34
KEGG koko:K15117,ko:K15348
KEGG TC2.A.29.15
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.isopropylmalate transmembrane transporter activity
EggNOG OGsKOG0755@1,KOG0755@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Exons2
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.140973-CDS-H-paniculata_contig13284:482..6821622929052.140973-CDS-H-paniculata_contig13284:482..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13284 483..682 +
1691480713.066898-CDS-H-paniculata_contig13284:482..6821691480713.066898-CDS-H-paniculata_contig13284:482..682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13284 483..682 +
1622929052.2174587-CDS-H-paniculata_contig13284:1024..12201622929052.2174587-CDS-H-paniculata_contig13284:1024..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13284 1025..1220 +
1691480713.0771422-CDS-H-paniculata_contig13284:1024..12201691480713.0771422-CDS-H-paniculata_contig13284:1024..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13284 1025..1220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13284.2052.1prot_H-paniculata_contig13284.2052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13284 483..1220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13284.2052.1

>prot_H-paniculata_contig13284.2052.1 ID=prot_H-paniculata_contig13284.2052.1|Name=mRNA_H-paniculata_contig13284.2052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MNTKYRYRGMAHAISEVVRTEGLGGMTRGMGASMLRVMVGSAAQLSSYNS
CKTAVLSTGVFEDNIYAYLASSMVAGLVVTTAINPFDVVSTRLYTQGGGV
TERYTGVLDCATKTLKAEGFRGVRVGYVGWA*
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mRNA from alignment at H-paniculata_contig13284:483..1220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13284.2052.1 ID=mRNA_H-paniculata_contig13284.2052.1|Name=mRNA_H-paniculata_contig13284.2052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig13284:483..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACGAAATACAGGTATCGGGGCATGGCCCACGCGATCAGCGAAGT GGTTCGAACGGAGGGCTTGGGCGGGATGACCCGTGGGATGGGCGCCTCTA TGCTGAGGGTAATGGTGGGCTCTGCCGCACAGCTGTCGTCCTATAACTCG TGCAAGACCGCCGTGCTCAGCACCGGCGTGTTCGAGGATAATATCTACGC GTAAGTGAGCGTCGTGAACGAGAGCCGACACCACATATCTATTACAGCAA TATAGAGTGATGTACTAAGAACATGAAAAGACAGAAAAGAAAAGAAATAC GAATGCGTTTGTTTTAAATGCATGTGTTTGTATGCCGCTGTATGCCACTG TATGTCACTGTTCTATCTGCGCTACATGTATCGATTGTTATGGTGCGGAG CTGCATGTAAAGTTCAGTACGGTACATGGTGAAATTCGGAGGTTTTTCGC TTCTCTTGACCGTCGTGCGTAAACCTCCTCCTCCTCATCAACAAAACAAG TACAACATCGGATCATGACAAAAACAATAATGACGAACACAGGTACCTGG CGTCGAGCATGGTGGCGGGGCTCGTGGTTACGACCGCGATTAATCCGTTC GACGTGGTGAGCACAAGACTCTATACTCAAGGAGGGGGCGTTACGGAGCG ATATACAGGCGTGCTGGACTGCGCCACAAAGACGTTGAAGGCTGAAGGTT TTAGAGGGGTACGTGTTGGTTATGTTGGCTGGGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13284:483..1220+

>mRNA_H-paniculata_contig13284.2052.1 ID=mRNA_H-paniculata_contig13284.2052.1|Name=mRNA_H-paniculata_contig13284.2052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig13284:483..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACGAAATACAGGTATCGGGGCATGGCCCACGCGATCAGCGAAGT
GGTTCGAACGGAGGGCTTGGGCGGGATGACCCGTGGGATGGGCGCCTCTA
TGCTGAGGGTAATGGTGGGCTCTGCCGCACAGCTGTCGTCCTATAACTCG
TGCAAGACCGCCGTGCTCAGCACCGGCGTGTTCGAGGATAATATCTACGC
ATGAATACGAAATACAGGTATCGGGGCATGGCCCACGCGATCAGCGAAGT
GGTTCGAACGGAGGGCTTGGGCGGGATGACCCGTGGGATGGGCGCCTCTA
TGCTGAGGGTAATGGTGGGCTCTGCCGCACAGCTGTCGTCCTATAACTCG
TGCAAGACCGCCGTGCTCAGCACCGGCGTGTTCGAGGATAATATCTACGC
GTACCTGGCGTCGAGCATGGTGGCGGGGCTCGTGGTTACGACCGCGATTA
ATCCGTTCGACGTGGTGAGCACAAGACTCTATACTCAAGGAGGGGGCGTT
ACGGAGCGATATACAGGCGTGCTGGACTGCGCCACAAAGACGTTGAAGGC
TGAAGGTTTTAGAGGGGTACGTGTTGGTTATGTTGGCTGGGCATGAGTAC
CTGGCGTCGAGCATGGTGGCGGGGCTCGTGGTTACGACCGCGATTAATCC
GTTCGACGTGGTGAGCACAAGACTCTATACTCAAGGAGGGGGCGTTACGG
AGCGATATACAGGCGTGCTGGACTGCGCCACAAAGACGTTGAAGGCTGAA
GGTTTTAGAGGGGTACGTGTTGGTTATGTTGGCTGGGCATGA
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