mRNA_H-paniculata_contig13282.2051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13282.2051.1
Unique NamemRNA_H-paniculata_contig13282.2051.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13282.2051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13282contigH-paniculata_contig13282:602..7126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size798
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13282.2051.1prot_H-paniculata_contig13282.2051.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13282 670..6948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.9571288-UTR-H-paniculata_contig13282:601..6691622929051.9571288-UTR-H-paniculata_contig13282:601..669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13282 602..669 +
1691480713.000128-UTR-H-paniculata_contig13282:601..6691691480713.000128-UTR-H-paniculata_contig13282:601..669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13282 602..669 +
1622929052.0571575-UTR-H-paniculata_contig13282:6948..71261622929052.0571575-UTR-H-paniculata_contig13282:6948..7126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13282 6949..7126 +
1691480713.0414073-UTR-H-paniculata_contig13282:6948..71261691480713.0414073-UTR-H-paniculata_contig13282:6948..7126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13282 6949..7126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.9770315-CDS-H-paniculata_contig13282:669..10101622929051.9770315-CDS-H-paniculata_contig13282:669..1010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 670..1010 +
1691480713.0095372-CDS-H-paniculata_contig13282:669..10101691480713.0095372-CDS-H-paniculata_contig13282:669..1010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 670..1010 +
1622929052.0127645-CDS-H-paniculata_contig13282:4297..44241622929052.0127645-CDS-H-paniculata_contig13282:4297..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 4298..4424 +
1691480713.018437-CDS-H-paniculata_contig13282:4297..44241691480713.018437-CDS-H-paniculata_contig13282:4297..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 4298..4424 +
1622929052.0334568-CDS-H-paniculata_contig13282:6864..69481622929052.0334568-CDS-H-paniculata_contig13282:6864..6948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 6865..6948 +
1691480713.0276499-CDS-H-paniculata_contig13282:6864..69481691480713.0276499-CDS-H-paniculata_contig13282:6864..6948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13282 6865..6948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13282.2051.1

>prot_H-paniculata_contig13282.2051.1 ID=prot_H-paniculata_contig13282.2051.1|Name=mRNA_H-paniculata_contig13282.2051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MGDCRHPTVQELFLGEASSARNEPSSSVSKSWEGDGDDDDDDHGDDDDND
DDDDGETEWVVEEEKERDEGVREKADGEDVLSPRGGSAGGGGGGDGDGDG
DGDGDGDGGASGAGNSCCSSATAATAATEGAKTPKSTFLSLGTMSDLVQQ
GSSRGQELSEAAELGAMRSPPGAGSDAGSCAAM*
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mRNA from alignment at H-paniculata_contig13282:602..7126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13282.2051.1 ID=mRNA_H-paniculata_contig13282.2051.1|Name=mRNA_H-paniculata_contig13282.2051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6525bp|location=Sequence derived from alignment at H-paniculata_contig13282:602..7126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGGCAGCAGCAGCGGAGGCGGATCACTCTGCCCCTGTGGCCACACCG
ACAGCTCCCCGGGTGGGTATGGGCGATTGTCGACACCCTACCGTACAAGA
GCTGTTCCTAGGAGAGGCGAGCAGCGCTAGGAACGAGCCTTCCTCAAGCG
TTTCCAAGTCTTGGGAGGGCGACGGCGACGACGATGACGATGACCATGGC
GATGACGATGACAATGACGATGACGATGACGGAGAGACGGAATGGGTGGT
AGAGGAGGAGAAGGAAAGGGACGAGGGAGTGAGAGAAAAAGCTGACGGGG
AGGATGTTTTGTCCCCGCGTGGTGGTAGTGCTGGTGGCGGCGGCGGCGGT
GATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGGTGCTTC
GGGCGCAGGGTGAGTTTTGGGGAAGGGGTGGGGGGCAAGAGACGTACTCA
TGTTCTGCATGTCTTAGATATTAGACCATTTTCCACGCGGCCTCGGGAAG
ACGAGGGGGGAGGGCGACGAGGAGGTTTTGGTTCATAAATTATTCCCATC
ACAGTCATTAGGAAATCAGCTCTGACGCGTCATATAATAACTCACCACTT
GTAGACATGCTTGTATCTATTATTTGTGTCTACCCAAGATAAACGATGAT
ACTTGGAGATTGTTGTTGCGAATGCTCCATTCGTATTGTTTCGCGAGGTG
AAAGAAACTATGCTATATACCCCCCCCGACCCGTGTTCTGAATCCTGCGA
TTGTGAATAGATGTTGGCCTGAAAAGTCGAGGGTTTAACCAAAGGCAGTG
AGTGGGGCAAGGCAAAAAAACAAAACTGAGCCACATTTGGGAATGTAGGA
AAAGACCGATTAGCCCATCGGAGATCGCTCTGAGAAACAAAACTCCGTCC
TCCCTTTGTCGGACACATGGCCAATAATCTAGCCATTGCTGTGGGACCCG
CTAACGATGAGCACCCCACCCCCTCCCCCCCCCGCCCCCCGACACCCTCT
GTCGTCTCGAGGATGCGTGGCCAATAGTCTAATAACTACGGTATGTAAGA
CAAAATATGGGCATGCCTCCTTTTTCATTCTATTTTGCCGATAAGTATAC
ACAGTTGGATTGTGCGGTCGACTGCATCATCTTACCTCAGCAGATGGTCA
CTAGGTGGTCGTATACCCGGCGAACAGTCACACACGCCAAATCCTGTTTA
TTTTCCCGGATGATGCTGTTATAGATTGAAAACTCTGTCTGCCCGAGCTT
TTCAATGCTCCATGGTATATCGAGTACAATGCATATAATTCACGTCACAT
GGACATCATCTGCCCCAATTCAAACAAATACGGTAATTCGTTCCATCTAT
CTCGTATTTTATTCGTGTCTTGTATTCGTATTTGTCTGGGGCGTGCGCAG
TTTACAATCATGGCTATATATGCTCATGCGCAGATATCGGGCGCAAAAGT
AAAGAAGTAACCACGAGTCGTGGATTATGGAGAATGACGAGTATGTGGAC
ATCATGTTAAACCAACTCCAGATATTTAGTTATATAATGCATCTCAGATG
AAAACAGGGGGTCGTTTTGTTATTTTCTGCGGTGGGTGACGTTTTTCTTT
TTCTTTTTATCATGGAGTTAATTGTAGAGCGAGAATGGGCGAGCATTGGG
TTTGCTTTGTAACGGACGAAAAACAATACATACCGTGGATGACTGAAGAA
CGTGAAGAGCATTTTATGGCGAATTTTTAAAAGTGTTTACCCCAAGGGTT
ATTCAAGCATGACACGAGCGCCTTTGTTCTTGGTGCGGCGGAAGGACCAT
CTACTACAATATATAGGACTGCCCCTATTAAAAATGCTTCCTTTGTGCTA
TAAATGAATTCGGGTGTGTTTTGGCAGGAGAGATTATCTCCAGATCAATA
CGCTGTTGAGAGGCTGCGTTGGAATCGTTGGAATGCTTAAAAGTCTGATA
GACTCATGGTATGCTACTCCGATGTGCCTTCCGATTTGTGTATGAAAAGT
CATGCCCGTTCATTTTCACGTTTTTCTCGATCGGGTGGCATTTTTTGCGC
CCCGTGCGCTCCCGGTGGATTTCGCCAATTTCCGTGAAATTTTGGGGGAT
CAAGCCCAAAAAACATGTATTTAGGATTATAACGTTGGAAAAAAATTGGA
GATGGTTAAATGCCTGTATAAAAATCAGCCGACTTCACTTATGGCATAGA
GGAAGTAGTCCAAAAAGTAATGATGTGTCTGTGTGTGTGTGTGAAAATGG
TGTTCCATTCTCTACAGACTTTAGTATGGATTATTCTCTTCTATAGGGTA
CTCTCCACATATTTAAGAGTAGAATTATTCGTTGCGAAAGCATGTTATAT
ATATATATATATATATTTTTTTTTTCACGGTCTGCAATTTTCAGCTGACA
ACGTACATGCACAAAAAATGTGCCTTGTCGTTTACCACGACCTGGTCACA
GATGGAAAGGGGTGCTGTTGGCGTGACGTGCTCATGCTTGGAGGAGAGAA
TGGTTATACATGCGGTCGCCAGCGTTACTCCTGGCGCGCTGGCCGCTGTA
CCCTTTTTTGTCGTTTTCAGGGTGGGAGTACCCCCCCCCCCCCCCCCCCC
TTTATCTTCAGTTGTCTATTCGTATTGGTTCCAGGGTTGAACAAAACACG
CGCTGCACAGCTTGTTATGTAGGGCGTCGTAGGCTCCTCCCTCGCGCAAA
GGGTTGTTGATTTATTGGGGTTGATATGACAAATATACTGGTTACCCGAT
GTATTTGTATACTAGGCACCTTCTTAAGCTTCTCAGTCACAAGCCTTTGG
GACTTGCAATGGTTGTTAAAACGTTTTCCTCCGAAATCCGGAAGCTGAGT
TATCGATATGTTGGGGGTTGGTTGGTGTTCGTTTTGTGTGTAGTGAATAT
ACATGCACCCACCCCCTCAGTTGCTCGTAAGTTTGGCGGTGACCATATGT
TATGTACCCGTGATTGTTGGTTGGCTGGTTGCAATCTATTAGTAGGAGAA
GCCTATCTTTTCAGAAGAATTACTGCACCATGTTTGTTTTTCGACAGATT
TCAATGGTTGGCGAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCAA
GTTAGGATAGGCGTACGTACCCAACCGAGATATGAGGTCAGCTGGGGGGA
AACTCAACACGGGGTATGATGCGGTCAACCATATGAGCTTTGTAGAGCTA
CCGACTGTGGCTGGTGCGGTTGACGTGTTAGTGATTTTGAGGAAACCCCC
CCCTCCCCCCCCCCGTCTTACTGACGTAATCTTACTGATCGATAAAAGTG
TACACAAGTAAAGTATGTTTTTTCGGTCAGCTACATAATGTCAACGTGGG
GACAATGGAGCATATATATGTAAAGGCAATTTCATGTTGACATGCAGTGC
ACATGCGAGTGATGCAGTGTTGTGAAGGTTACCCCAGCCCATGTCGTGCC
TGCGAGAAGTCGTGGTAGTTGCTTATGATGGGGGTAACAATCTATGTAAT
GTGAACGGACCTGCCAAGCAGCAAAAATCCAAATGTCCATAAAGTCCATT
CCATACCTCCTTTCCCCTATCCCCTAACTCTATCCACGCGTCCCGCCACC
CTGACATGATGCCCCCCGCCTGTGTATTACTCCAACGCTGTGTGTGGTCG
TGTGTGGTCTTGGCGTGTACGTGTCTCGCGCGACCGCTGCTGCTAGCAAC
AGTTGTTGTTCGTCAGCCACAGCAGCAACAGCAGCGACAGAAGGGGCGAA
AACGCCGAAATCGACGTTTTTGTCTCTAGGAACGATGTCTGACCTGGTAC
AGCAAGGTTCCAGTCGAGGCCAGGTGTGTGTGCGTGTAGGTGTGTGCGCG
CCCACACACGTAAGGCACAAGTAGGGGTCGACAAGCGTGTGTCTAAATAA
ATAGTCATGCTTGATTTCTCAGATCCATATGTATTTGCTGCAAGTTCGCA
AGCGTGGTGGAACTGGCATCACTAAAATAAACAACATTGATTTTTCAAGT
CATGAATAATATATTTAGAGCAGGAACATTCTTGAAATTCCTGGGGTTCC
CTAAAAAAATTCAATCCCGTATCCAGCATCCAGCCGTGTGTTTTTTCTTT
TGCCTCACATCGGAACAGTTTTTATAGATATTCTTCTCCGACCCGCAGAA
GATAGTTTTTTTTCGGGGGGTGAATAGTGTTCGCAGAACAAAATTGCTGT
GTCTGCAATTTGACGGCCTCACTGTATTCCCTAGAATCTAGACTCGGAAG
CAGAGCGTGAGCGTGTATGCCTCCGCGGGAGGCCAATCTTGCGTGAGGAG
CGGTGTGTTCGTGATTACATTGCCTGGGTCATTCGATGTTTGAAGTCTAA
GATACGGGAGTCCCCAGTTGTTCGTTAATCTTTCAAAAAGAAAGCTCTCT
CGTGTTTTTACTACGAAAGCCCTTGTTAAACACTGGAGTCTCAGACGCCA
CGAGCGCCCCCCCCCCCGGGAGTGGAGTCTTCTTGCCCTCGGGATCTTTC
GTTTTGCTTTTGAGGAGACAAATTCAAGTTTCGTCCCCCGGCTAAGGGAC
AAGATATATATATATATATATATGTTAGATCCCCCAGGAGATCAAGGTCG
AAGAAAAGACGAAGAGAACTTGCTGTTATATATACCAATTCTATCTCTCA
CGATCCTGTCTCCAGGCCTTGGGTCAGCGTGTCCATTGACCGTACAAAGA
GCCGTCTAGGCTAACGGTTGAGATGAGGGAAGTTTCACAGCCAGGCAGGC
GTCTTTTCCCATGCTTCGGAAACCGACTGCATTGTGGATTCGTTATCTTG
ATGTGTACTACAGATCTGATTTGCAATATACGGTGTGAGCCCTACTTGTC
GGAAAAACGTTCTCTGTTTGATTTCTTGTTCATAGTTGCTGCATATATAG
CTATAGATCTATCTATCTATCTATCTATCTATCTATCTATAAGAATTAAA
AAAATTGAGCTGTATTGGCATTCTCACTACCCCCCCCCCCCCCCTTTTCC
GCCTGTAAGAGGAATTCTTATTTCATTTGACTGTTTTTTTTTTGTTTTTT
TTTGGGGTCATGTGTGTGCGTGTACATGGAGTCCTGTATAGATAGCGGAC
GGTTTTCCTTAGTGCGATTCGTGGTCATATGTACGAAGTTTCGGTGTTGG
ACCCGGATGCGAGCAAAACCAACGCAGGAAGTAACCCTTACCCTGACCCT
GAACTCCAACCCATAGATCACAAGTGCGGTGGTAGAGGTCAGATCGGGCA
CCAGAAGCTTCTAAAATCGCCCAGGTGCTGTGCCGCTCCGCAGTGTGGCA
CCGACCCTGTAGCCAGGTCATGGAGGGGTTGGGCAGTACGTACCCCTGCA
GTAAAACCAAGTGAAACGAAATTTGATTTATTGATATATTTGACGAGGTT
CTGTGGTAAACTACTGTATAGATGGCGTGTCCGCGGGTGTAGTGTGTTAT
TAAAAGACTTGAAAATTACACCGCCGGAGCGAATGCAAGTATTTGACATA
GTTGGAATGGATTTAGGCGATAGTTTAGTAGTCGTCTGAGTTCCGGCATG
TCGGGGAGAGGAGGGTACATGAAGAAAGAGAGGACATGCTTGTTTATTCG
TTTTGATGGTATTTGCATTTGCCATGATCGTAAGTAGATGAGTCCAGGGC
ACGCATAATGTTTGAAAACGCGTTTTTGTGCCTGGTATGGAACACAATTC
AACATGCCATGCAGTGAATCTGGCACATGATATATCCAGTAACCTTTTGA
CTATGCCAGCGACCCCGGCGCTACATTCTCACGATGTTCTGTGCCCCCCC
CCCCCCCCCTTCGTGGTACATATGATTGGCAACATGAGAATTATATTTGG
TTATTATCCATTAAAGATCGCTCTGACGTGAATAACTCTCTCTATCCTCT
TGAGGACGTGTGGATAATGACATCTAATTATGATATAAGTCATGGTATGC
AAAACACAAGGAAACCCGGTCTTACTCAATGTAATTTTTGCTGATAAGTG
TATATATGCGACTGAAGTCTGTTTGGGGTCAATTGCCGAAAATACCTGCA
ATATGGACACAACGGAGTGTTGGTATGCTACCGGTAGAGCTGCAATTCTA
CTAACTGTGACACGTCGGTTAGATTGATTTACCAATGAGAACCCCGTTTT
GTTTTCAGTCGTTGGTGTAAAATCTTTTTCATGTTTACCCTCCCCATCCA
AAGCGTAAGTACGCTCCCCCCCCACCCCTCCCGACCTCCTGATAACGCCT
TCTTGCAATTCAGGAGCTGTCTGAGGCAGCAGAATTAGGGGCGATGAGGA
GTCCCCCAGGCGCCGGGTCTGATGCTGGAAGTTGTGCGGCGATGTGACGC
TTGTGGTTCAACAGTTGCGGATTCGTTTGGCACTTTGTGTCGGTTCAAAA
GCCCGGTTTGGTGGCTTTTGTGACGCGAACAATTTTCGTGAAATCGTGGC
TTGATTTTGATTAATCATAAAAGAACCTTTTCTCCTGTGTTGACTGTTGT
CAGTTGGTTATTCATGTATATTAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig13282:602..7126+

>mRNA_H-paniculata_contig13282.2051.1 ID=mRNA_H-paniculata_contig13282.2051.1|Name=mRNA_H-paniculata_contig13282.2051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig13282:602..7126+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGATTGTCGACACCCTACCGTACAAGAGCTGTTCCTAGGAGAGGC
GAGCAGCGCTAGGAACGAGCCTTCCTCAAGCGTTTCCAAGTCTTGGGAGG
GCGACGGCGACGACGATGACGATGACCATGGCGATGACGATGACAATGAC
GATGACGATGACGGAGAGACGGAATGGGTGGTAGAGGAGGAGAAGGAAAG
GGACGAGGGAGTGAGAGAAAAAGCTGACGGGGAGGATGTTTTGTCCCCGC
GTGGTGGTAGTGCTGGTGGCGGCGGCGGCGGTGATGGTGATGGTGATGGT
GATGGTGATGGTGATGGTGATGGTGGTGCTTCGGGCGCAGGATGGGCGAT
TGTCGACACCCTACCGTACAAGAGCTGTTCCTAGGAGAGGCGAGCAGCGC
TAGGAACGAGCCTTCCTCAAGCGTTTCCAAGTCTTGGGAGGGCGACGGCG
ACGACGATGACGATGACCATGGCGATGACGATGACAATGACGATGACGAT
GACGGAGAGACGGAATGGGTGGTAGAGGAGGAGAAGGAAAGGGACGAGGG
AGTGAGAGAAAAAGCTGACGGGGAGGATGTTTTGTCCCCGCGTGGTGGTA
GTGCTGGTGGCGGCGGCGGCGGTGATGGTGATGGTGATGGTGATGGTGAT
GGTGATGGTGATGGTGGTGCTTCGGGCGCAGGCAACAGTTGTTGTTCGTC
AGCCACAGCAGCAACAGCAGCGACAGAAGGGGCGAAAACGCCGAAATCGA
CGTTTTTGTCTCTAGGAACGATGTCTGACCTGGTACAGCAAGGTTCCAGT
CGAGGCCAGCAACAGTTGTTGTTCGTCAGCCACAGCAGCAACAGCAGCGA
CAGAAGGGGCGAAAACGCCGAAATCGACGTTTTTGTCTCTAGGAACGATG
TCTGACCTGGTACAGCAAGGTTCCAGTCGAGGCCAGGAGCTGTCTGAGGC
AGCAGAATTAGGGGCGATGAGGAGTCCCCCAGGCGCCGGGTCTGATGCTG
GAAGTTGTGCGGCGATGTGAGAGCTGTCTGAGGCAGCAGAATTAGGGGCG
ATGAGGAGTCCCCCAGGCGCCGGGTCTGATGCTGGAAGTTGTGCGGCGAT
GTGA
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