mRNA_H-paniculata_contig1328.2049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1328.2049.1
Unique NamemRNA_H-paniculata_contig1328.2049.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1328.2049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1328contigH-paniculata_contig1328:11850..15831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size691
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.1178896-CDS-H-paniculata_contig1328:11849..124761622929051.1178896-CDS-H-paniculata_contig1328:11849..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1328 11850..12476 -
1691480712.8627229-CDS-H-paniculata_contig1328:11849..124761691480712.8627229-CDS-H-paniculata_contig1328:11849..12476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1328 11850..12476 -
1622929051.132179-CDS-H-paniculata_contig1328:15768..158311622929051.132179-CDS-H-paniculata_contig1328:15768..15831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1328 15769..15831 -
1691480712.8707535-CDS-H-paniculata_contig1328:15768..158311691480712.8707535-CDS-H-paniculata_contig1328:15768..15831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1328 15769..15831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1328.2049.1prot_H-paniculata_contig1328.2049.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1328 11850..15831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1328.2049.1

>prot_H-paniculata_contig1328.2049.1 ID=prot_H-paniculata_contig1328.2049.1|Name=mRNA_H-paniculata_contig1328.2049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
ERRGGNDNDTTKLTNDLRLCEMADSTPSTPSPRQKRSSRRSSNATAAAAA
AVPSVPSPSPTASPGPAVSSSPRGGSSSPGRRGQSRTGSVDQGDGDGGPA
AEPVAVLTGESVTAAVANATPANAAPATMTSDSSADATAASVATATATAT
ATASATPALAPAVDVPVKATASISSVASSPSQMGRGRGGGRTIRGRSKST
TRGGGGRRGGCGGGSGDARGGRGDSVRRGR
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mRNA from alignment at H-paniculata_contig1328:11850..15831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1328.2049.1 ID=mRNA_H-paniculata_contig1328.2049.1|Name=mRNA_H-paniculata_contig1328.2049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3982bp|location=Sequence derived from alignment at H-paniculata_contig1328:11850..15831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGCGTGGTGGCAACGACAACGACACAACAAAATTGACCAACGACCT
GCGACTCTGTGAGGTTAGCACGACTGTTCTCTTGTTTGAAATCAGGAAAA
CAGCCCAACGCAACAGTACCGTAAAGTTGGTGGGAGCCAGAGGCAGGCGC
AGGTAGGGGTTAAGTGAAGTTGACAAGGTGTGGCGTTTTCTTTGTGAGCG
TTTATATGCATTTGCCTGCCTCGGTATCGTAGCTCAGAGTTCGACACCCA
TGTCGATTTGTGTGCAACAGCCAGTAGCGTGTTAGCGAAAGAGACTGTCA
TGATGTTTTACCCTGCTGTCATCCTTTGCCCCTTGTGCAGTTATCGGTGA
TACGATGACACCGTAACAGCAATGCTCATGCTCAGGAATTGCCACCCGAC
CTTCCGTAGTCCTGTGCCCAATCGCTGTTGCGAGAATACTTCAATTCAAG
GTTTTGCTTCGCGCACTTTATTTATAGTAGCTGGAGTATTTTGATGTTTG
CTTATCCACCCTGTGGAATCGAGTCATGAAATTAAGCTATTAATAGAGGG
GACACCTACAGGTGAAGCTATCTACTCAGAAGGGGGAGTAGTGAATAATG
CGTTATTTCGGTGCCGACGACGATACCTGCCCCAGGCCGAAGACGTCTCT
CAGTTAGTAAGGGTTTGGCTGATCTACAGAACATAGAGGTCCACATACCA
AGTGTCCTCGTTACATTGAAAGGATACAACACACTTTCGATAGATGCTCC
CGAAGGAAGCACCCACAAATGCACCAGAAAGGATACGGACATGTAGCAGG
TGAAGACGCGACACAAACAAATCAAGCAAACGAATAATATGAGTGCGGAC
ACCGTTTTGTACAGCTGGATAGACAATAGTCAAAACGTAACTGGCAACTC
TGATTCTCAAACGTCAACTGGATTGTGTCAGTGATGTTTATTTTTACTAT
AGACAGTAGCATTGTGTAAACGATGATTCTCCGGAATGGTGCAGGCATTC
TCAAAACCTGTCCATAAATAGCCTCCTCCCTGGTGTCCCTGGATCGCCCT
CTCTTGCTCACTGATTCTCGGACCTTCCTGCTCGTCGCTAGACAGCACGT
ACGACGGGACCCAGATTGAGACATCATCGAGTCAGTCTTATCTTGGCGGT
AGAGACATGTTTCGTGCACTAACATGGACGGTGGGAGTGATTCCGTGGTT
ACTCCTTGACGCGAAGGAGGCTGTTTCATATTTCGGAAAAAGATTATCCG
ACAATGAAATTCGGAACAAAAAACGAACTTGGCAATACGTTTTGGGGAAA
AAAAATGTATCTGACGAAAGAATTGCAACGAAAAATGGTTCTGACACCAA
ACATCGAGCGGTGTGAAAAGTCGTTGCATGCCAACTCTCTGTGCTGGATG
TACTGTACTGTCGTATTGGACTGGCGACCTGAACAGCGGTGACTGGCTCT
GTCTCTGTAATCTTTCGTATTCAGTGTTCATGCGCTGTTTTCTGAGGAGG
GGATGGGGTCAGGATTCATGTGAAAAGGGATGCGCAAAAGTGTTAGTCTG
GTGCGAGGAGCAAGTCGCGCCTGGTTGATTGCTTGGCGATATCGATATCC
TCCCTCGAAAAGGGCCAAGGGGTGCAGTCTGAAGGACAGTTTTGTTTGGT
GGAGCACAGTGTGCTGATTGTCCGAACAGAGTCAAGTGTCAAGGTTCGGC
AAAATCGTAAAAGACCTCGACATTTCTTCACTGTTTACAGTACAAGTGTA
TGTGCAATGATGCCCACGTACCGTGAAGCCGTTGCCTATTACATGGTCTA
TAACCTCGGCGTACAAGGTGGCACATAACTTTCAGTTAAGACACAATACC
CCCCCCCCCCCGCTTTTTCGAGCTTGGGTGGGTTTTATTTCCCTTTTGAC
GGTACTGAATGAAGTACCGGTATTTAGTTTACCGTGTAGTCTCTCGACTG
ACCAGATGGCCCAGATTGTCTCATGTGAATATCTCAGACCCGCTGTCAGT
GGCCGCAGAAGTAGAAAATGGTCGATAAGTATACACGTCACCGAACTCGT
TTCGATTCATAATGATGAGGGCAGATGCTGTGGAGGGATTATCGTGGGTA
AACATGTATGAAATTTGGGATACGATCGATTTTATCCCCCCGCATGTACT
TGAGGGATTTTGACGGGCCTGTGGGATGTGGTGTGTCAACTGGGAGATAC
GTGCCAACTTGCTGATGGTGTCATTTTTCAGTCTCTATTCCTCAAAAATT
GTGTGGTTGTTCCTTGCTTGTCGATATATATATATATATATATGCCACTA
GATAGAAGTGCTCTTTCGACAATGCGACCAGATAAGCTATCAGTGCTCAA
GATAATCGAGTCTGAAACTCGTTGTCACCCGCGGTCATCTGGTTGTGTGG
TACTAGTACTACCCTTAAAAGTGCAGTGCATACCTAGGATGGTAGAGAAC
AGGCGGTACTGCGGAAATTGTAAATTAGCTGCACGAGGGCGTCAATATTA
CAGCAGCGTCGCGCAGAGTCGAGTTCGTGAGAGCGGGTGCTCCCGACCCC
TTGTCCGTTCTTCCAGATTTTTTCGTTATTATGAAAGTGCTATGCTGTGG
ATTCGTAGGGAACGGTTGCCTGCCTAACGCTGTTAACTGTTCATTATGTT
TTGTTCTTATTTTTTTGTATATTTTACAATAGTTACACATAAATTAGGAC
AACTTGTGAATTCCTGCGTGCACGTCCATGTGATCACCCTTCGTTGCAAC
CTACCTGTCCCTTGAACCCTCGAGGAGGCATTCATGCCCAATGTAGTTTT
CATGGTGACGAGGCGTTTTTTCTCTGGACAGGAGTCGCAGCTGACCCGAT
CCTGCAACTTCTTCCTTGCCCTCCTTGTCCAAAAGCTGGTACAATTAACA
CTGACTTCACTTGTAGTTCCGCACACTGTCGTGGAGTGTACAGACTATAA
CAACGCGGGTAACATTTGTTTCCGAGTTTGTCTTTCGCCAAGACTGCGTT
GCTGGTGCCACCAAAGTCCTGCTGTTAGGAAGGTCTCTCTCGTTGAGACT
AGTCGTTGAGAGTATTCCCTTGACGGGCTTTCTCGGAAGTCCCATTGGTC
TCTCCTCTGGACAATCTCTTGAGCTTTTATAACAAAAAAAAGCCACTTGG
AGCATTTATTCACAGTAAACTAGGGTAGAGGGTGCTCGGTTCAAAGGTCG
GCACCACCTATGCTCGTACCGACAGCAACAGTCTTATGGCCAAGGTTCAC
CCAAGCCCCCGTTTTACTCTCGAAGGCACAGATAACACTTCAACACTTCA
CACTTGACTGAAAGCATTATTCCCCGTTCTCGCATCTCTTGCAAACGACT
TACAGATGGCTGACTCTACACCATCAACACCCAGCCCAAGACAAAAACGA
TCATCCCGCCGCAGTAGCAATGCTACCGCCGCCGCCGCCGCTGCAGTCCC
TTCAGTGCCCTCCCCAAGCCCCACTGCTTCTCCAGGCCCCGCCGTCTCGT
CATCACCTCGCGGTGGCAGCAGCTCTCCGGGACGGCGCGGCCAATCGCGG
ACGGGAAGCGTGGATCAGGGCGACGGTGACGGCGGGCCAGCAGCAGAACC
TGTAGCAGTCCTGACGGGCGAGTCCGTAACCGCTGCCGTCGCAAATGCTA
CACCCGCTAACGCTGCTCCCGCGACAATGACAAGCGACAGCTCGGCCGAT
GCTACTGCCGCTTCGGTTGCTACTGCTACTGCTACTGCCACTGCCACTGC
TAGTGCTACTCCTGCTCTTGCTCCTGCTGTCGATGTTCCCGTCAAAGCTA
CTGCTAGTATCAGTAGCGTCGCGAGTTCTCCGTCGCAGATGGGGAGGGGC
AGGGGCGGCGGAAGAACGATTCGCGGGCGATCCAAGAGCACTACTCGCGG
TGGTGGTGGCCGCCGCGGCGGCTGCGGCGGTGGGAGTGGTGATGCACGCG
GCGGTCGTGGGGATTCTGTCAGAAGAGGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1328:11850..15831-

>mRNA_H-paniculata_contig1328.2049.1 ID=mRNA_H-paniculata_contig1328.2049.1|Name=mRNA_H-paniculata_contig1328.2049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig1328:11850..15831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGGCGTGGTGGCAACGACAACGACACAACAAAATTGACCAACGACCT
GCGACTCTGTGAGGAGCGGCGTGGTGGCAACGACAACGACACAACAAAAT
TGACCAACGACCTGCGACTCTGTGAGATGGCTGACTCTACACCATCAACA
CCCAGCCCAAGACAAAAACGATCATCCCGCCGCAGTAGCAATGCTACCGC
CGCCGCCGCCGCTGCAGTCCCTTCAGTGCCCTCCCCAAGCCCCACTGCTT
CTCCAGGCCCCGCCGTCTCGTCATCACCTCGCGGTGGCAGCAGCTCTCCG
GGACGGCGCGGCCAATCGCGGACGGGAAGCGTGGATCAGGGCGACGGTGA
CGGCGGGCCAGCAGCAGAACCTGTAGCAGTCCTGACGGGCGAGTCCGTAA
CCGCTGCCGTCGCAAATGCTACACCCGCTAACGCTGCTCCCGCGACAATG
ACAAGCGACAGCTCGGCCGATGCTACTGCCGCTTCGGTTGCTACTGCTAC
TGCTACTGCCACTGCCACTGCTAGTGCTACTCCTGCTCTTGCTCCTGCTG
TCGATGTTCCCGTCAAAGCTACTGCTAGTATCAGTAGCGTCGCGAGTTCT
CCGTCGCAGATGGGGAGGGGCAGGGGCGGCGGAAGAACGATTCGCGGGCG
ATCCAAGAGCACTACTCGCGGTGGTGGTGGCCGCCGCGGCGGCTGCGGCG
GTGGGAGTGGTGATGCACGCGGCGGTCGTGGGGATTCTGTCAGAAGAGGG
AGGATGGCTGACTCTACACCATCAACACCCAGCCCAAGACAAAAACGATC
ATCCCGCCGCAGTAGCAATGCTACCGCCGCCGCCGCCGCTGCAGTCCCTT
CAGTGCCCTCCCCAAGCCCCACTGCTTCTCCAGGCCCCGCCGTCTCGTCA
TCACCTCGCGGTGGCAGCAGCTCTCCGGGACGGCGCGGCCAATCGCGGAC
GGGAAGCGTGGATCAGGGCGACGGTGACGGCGGGCCAGCAGCAGAACCTG
TAGCAGTCCTGACGGGCGAGTCCGTAACCGCTGCCGTCGCAAATGCTACA
CCCGCTAACGCTGCTCCCGCGACAATGACAAGCGACAGCTCGGCCGATGC
TACTGCCGCTTCGGTTGCTACTGCTACTGCTACTGCCACTGCCACTGCTA
GTGCTACTCCTGCTCTTGCTCCTGCTGTCGATGTTCCCGTCAAAGCTACT
GCTAGTATCAGTAGCGTCGCGAGTTCTCCGTCGCAGATGGGGAGGGGCAG
GGGCGGCGGAAGAACGATTCGCGGGCGATCCAAGAGCACTACTCGCGGTG
GTGGTGGCCGCCGCGGCGGCTGCGGCGGTGGGAGTGGTGATGCACGCGGC
GGTCGTGGGGATTCTGTCAGAAGAGGGAGG
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