mRNA_H-paniculata_contig13276.2046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13276.2046.1
Unique NamemRNA_H-paniculata_contig13276.2046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A6H5JUU7_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 5.720e-35
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSLAQKIGDEAFE 243
            +CGI++SFF+TQLSDNG GYR+QGVKRFLKKAKIDLF LDKF+ PINV ++HWTLAVINFRL+RLEYYDSL    GD  FE
Sbjct:  381 KCGIMSSFFYTQLSDNGRGYRYQGVKRFLKKAKIDLFDLDKFIFPINVNQNHWTLAVINFRLERLEYYDSLGAPFGDAGFE 461
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: D7FMM6_ECTSI (Protease, Ulp1 family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.660e-34
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSLAQKIGDEAFE 243
            +CGI++SFF+TQLSDNG GYR+QGVKRFLKKAKIDLF LDKF+ PINV ++HWTLAVINFRL+RLEYYDSL     D  FE
Sbjct:  632 KCGIMSSFFYTQLSDNGRGYRYQGVKRFLKKAKIDLFDLDKFIFPINVNQNHWTLAVINFRLERLEYYDSLGAPFDDAGFE 712
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A427YAD4_9TREE (Smt3-specific protease n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427YAD4_9TREE)

HSP 1 Score: 76.6 bits (187), Expect = 1.610e-14
Identity = 33/67 (49.25%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   13 VNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSL 213
            +NSFF+ +LS+ G  Y    +KR+ K+AK+D+F+LD+F++PINV+ +HW  A +NF  +R+EY+DSL
Sbjct:  461 MNSFFYQKLSEQG--YEKANLKRWTKRAKVDIFELDQFLVPINVSNAHWVCASVNFAKKRIEYFDSL 525
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A836CHU4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-14
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSL 213
            R    NS+F ++L++N   Y + GV+R+ KKAK+D+F LDK ++P NV   HW LAVI  + +R++YYDS+
Sbjct:   20 RSHFFNSYFLSKLTENS--YNYPGVRRWTKKAKVDIFTLDKVIMPANVGNMHWCLAVIYVQERRIQYYDSM 88
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A7S2NR69_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NR69_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 9.770e-14
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSL 213
            RC    + F+T+LS  G  Y ++ VKR+ KK  ID+F+ +  ++PI+   +HWTLAVINF+L+R EYYDSL
Sbjct:   56 RCHFCQTNFYTKLSGGGGSYDYKSVKRWTKK--IDIFQKELVIVPIHCHGNHWTLAVINFKLKRFEYYDSL 124
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A7S0QCY7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QCY7_9CRYP)

HSP 1 Score: 70.9 bits (172), Expect = 1.690e-12
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSL 213
            +C   N++F+++L+++G  Y ++ VKR+ KK  +D+FKLDK ++PIN    HW LAVI+FR +R E YDS+
Sbjct:  331 KCWFANTYFYSKLTEDG-AYCYRNVKRWTKK--VDMFKLDKLIIPINDNNVHWFLAVIDFRAKRTEVYDSM 398
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A0A8LC68_9SACH (WGS project CCBQ000000000 data, contig 00015 n=1 Tax=Kluyveromyces dobzhanskii CBS 2104 TaxID=1427455 RepID=A0A0A8LC68_9SACH)

HSP 1 Score: 70.5 bits (171), Expect = 2.350e-12
Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   16 NSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSLAQKIGDEAF 240
            NSFF++ L+D G    +QGV+R++K+ K+D+  L+K  +PIN+  SHWTLA+++ + Q++ Y DSL+       F
Sbjct:  422 NSFFYSTLADRG----YQGVRRWMKRKKVDILDLEKIFVPINLNDSHWTLAIVDLKNQKIFYLDSLSSGTSSVGF 492
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BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: J7R5A6_KAZNA (ULP_PROTEASE domain-containing protein n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7R5A6_KAZNA)

HSP 1 Score: 70.1 bits (170), Expect = 3.200e-12
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   16 NSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSL 213
            NSFF+T LS+ G    +QGV+R++K+ K+ + KLDK  +PIN+ +SHW L +I+ R +R+ Y DSL
Sbjct:  398 NSFFYTSLSERG----YQGVRRWMKRKKVTIDKLDKIFVPINLKQSHWALGLIDLRRERIVYVDSL 459
[Close]
BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: Q6CKF8_KLULA (KLLA0F11000p n=2 Tax=Kluyveromyces lactis TaxID=28985 RepID=Q6CKF8_KLULA)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-11
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   16 NSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSLAQKIGDEAF 240
            NSFF++ L+D G    +QGV+R++K+ K+D+  L+K  +PIN+  SHWTL +I  +  ++ Y DSL+  +   +F
Sbjct:  409 NSFFYSTLADRG----YQGVRRWMKRKKVDILDLNKIFVPINLNDSHWTLGIIEMKQHKIYYLDSLSSGMNSVSF 479
[Close]
BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Match: A0A066VK85_9AGAM (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066VK85_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 1.480e-11
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   16 NSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAKSHWTLAVINFRLQRLEYYDSLAQKIG 228
            N+FFF +L D  MGY    + ++ KK  ID+FK D  ++P+N+  +HWT A INF+ +R+EY+DS+ +K G
Sbjct:  157 NTFFFAKLED--MGYEKSRIGKWTKK--IDIFKKDIVLIPVNLGNAHWTCAAINFQKKRIEYHDSMGRKRG 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13276.2046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU7_9PHAE5.720e-3576.54ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FMM6_ECTSI5.660e-3475.31Protease, Ulp1 family n=1 Tax=Ectocarpus siliculos... [more]
A0A427YAD4_9TREE1.610e-1449.25Smt3-specific protease n=1 Tax=Apiotrichum porosum... [more]
A0A836CHU4_9STRA1.800e-1446.48ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A7S2NR69_9EUKA9.770e-1449.30Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0QCY7_9CRYP1.690e-1246.48Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0A8LC68_9SACH2.350e-1241.33WGS project CCBQ000000000 data, contig 00015 n=1 T... [more]
J7R5A6_KAZNA3.200e-1248.48ULP_PROTEASE domain-containing protein n=1 Tax=Kaz... [more]
Q6CKF8_KLULA1.120e-1140.00KLLA0F11000p n=2 Tax=Kluyveromyces lactis TaxID=28... [more]
A0A066VK85_9AGAM1.480e-1145.07ULP_PROTEASE domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13276contigH-paniculata_contig13276:788..2308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8.9e-29
Seed eggNOG ortholog2880.D7FMM6
KEGG koko:K07277,ko:K08592
KEGG TC1.B.33
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009909,GO:0009911,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0055044,GO:0065007,GO:0070011,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
Ec32 ortholog descriptionProtease, Ulp1 family
Ec32 orthologEc-23_000900.1
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03029,ko04121
Exons3
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13276.2046.1prot_H-paniculata_contig13276.2046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13276 788..2308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.0470889-CDS-H-paniculata_contig13276:787..8801622929051.0470889-CDS-H-paniculata_contig13276:787..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 788..880 -
1691480712.8288155-CDS-H-paniculata_contig13276:787..8801691480712.8288155-CDS-H-paniculata_contig13276:787..880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 788..880 -
1622929051.068397-CDS-H-paniculata_contig13276:1621..16721622929051.068397-CDS-H-paniculata_contig13276:1621..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 1622..1672 -
1691480712.8397756-CDS-H-paniculata_contig13276:1621..16721691480712.8397756-CDS-H-paniculata_contig13276:1621..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 1622..1672 -
1622929051.0832338-CDS-H-paniculata_contig13276:2209..23081622929051.0832338-CDS-H-paniculata_contig13276:2209..2308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 2210..2308 -
1691480712.8499491-CDS-H-paniculata_contig13276:2209..23081691480712.8499491-CDS-H-paniculata_contig13276:2209..2308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13276 2210..2308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13276.2046.1

>prot_H-paniculata_contig13276.2046.1 ID=prot_H-paniculata_contig13276.2046.1|Name=mRNA_H-paniculata_contig13276.2046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
RCGIVNSFFFTQLSDNGMGYRFQGVKRFLKKAKIDLFKLDKFMLPINVAK
SHWTLAVINFRLQRLEYYDSLAQKIGDEAFE
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mRNA from alignment at H-paniculata_contig13276:788..2308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13276.2046.1 ID=mRNA_H-paniculata_contig13276.2046.1|Name=mRNA_H-paniculata_contig13276.2046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1521bp|location=Sequence derived from alignment at H-paniculata_contig13276:788..2308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGGCATTGTGAACAGCTTCTTCTTTACGCAGCTGTCAGACAACGG
AATGGGGTACCGATTCCAGGGAGTCAAGAGATTTTTAAAGAAAGCCAAGG
TGAAGAGAAGTGCTCCGTTGGGTTAATCATTAAACCCCATTAGGAAGGAA
CCAACCGGACTTTGTAATGGCCAAATATCTAGATTTTTGCTAGCTAACGA
CCAGTCGTGAATAATGACCTATACGAGCACGTCGAGAAATCGCTTATCTT
TGCTCACAAGAAAATTGAAGGAACTCCATCATGATGTCAACGTCTACTTA
ATTACTTGGCTTACAGTGTCTCTATTCGGATGATAGGTATAGAGTGCAAC
ATACTAAATCAATCAATCTGTCTGTTCCATATTTTTTTAACGTGTATCGC
TAGAGACAGATACCGTTGCCCAGATGCAATACCCCGCCAGCACACAGCAT
GGATGACGGTGCTACAGTTGATACAGTGTAAAATTGGTTTAATTTAATTG
TCGTGGTGACATCATTTAACTTTTTTTCGGTTTTATTTTCCGGACCTGTC
GTCGTTTGTTGTCCGTTCCCGCGCTCTCCTCTTTTGTCTCGTGTTTTTTT
CCCTCGGCTGATAAACAAACAACCTTTGCTGCGCAGATCGACCTGTTCAA
GCTAGACAAGTTCATGTTGCCAATCAACGTGGCCAAGGTATGCTTGATAT
GTGCTCTGAGCTTACGGCCAAGCAACTTTCCATTTTTTTCGGGCCCGATT
GTGGCCTATCAGACCTATACATCGCACATTTTTCCAACGACACGAATATG
TTCATCACCGCGGTAGGGTAGACTAAGTGTCAGAGAGGGGGCCTCCGAAT
GTAAAGCCTGGCGTTGTCGGTCTTCACTGTTTTGGTGGTGACCCACCTAA
ACGTTTGAGATTGTTGCCTTGTAAGTTTGTCGTACTTGGGGGAGTGAAGC
GAACGGGAAAACTAATTGAAATGATCAAGGGAATCGATCCTGCATTCGCA
CCTGACTGTACGTACGGCACCGTGGATTACCTCCCCCCCCCAAAACGACA
TAACGAGCCAAGAAAGTAACTAGAGACAGAGCACCCCTGATTTTTTTTGC
CTCCGACGGTTCCTACCTGGACATTTCGTATGAGGCGTTTTGTCGCGCGT
ATCTCGGCGTTTTGTGTGGCAGCAAGGAGCGGGCGTTTTATGTATGCATG
ACGGTCAAGTCAAGTGTCATGTCTCCTACAAATTTGACGTGATAATACCC
TAGATCTAGTTTGTCTGCGGTGCACACGATCTACATAATTTGTTATGTGC
GAGATCCGCTCATGATCATTTGTGCGTAGCGTGTGATATTACGTGTGATA
TTACGAGGAAAATTTGGTTTCAATTTTTTAATCGGAGCATTGTTTGTCTT
TGTCTCCTTGTCTCGTGGCTATGTGCAGAGTCACTGGACCCTGGCGGTTA
TCAACTTTCGTCTACAGCGTCTGGAGTACTACGATTCGCTTGCACAAAAA
ATTGGAGACGAGGCGTTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13276:788..2308-

>mRNA_H-paniculata_contig13276.2046.1 ID=mRNA_H-paniculata_contig13276.2046.1|Name=mRNA_H-paniculata_contig13276.2046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig13276:788..2308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGGCATTGTGAACAGCTTCTTCTTTACGCAGCTGTCAGACAACGG
AATGGGGTACCGATTCCAGGGAGTCAAGAGATTTTTAAAGAAAGCCAAGA
GGTGCGGCATTGTGAACAGCTTCTTCTTTACGCAGCTGTCAGACAACGGA
ATGGGGTACCGATTCCAGGGAGTCAAGAGATTTTTAAAGAAAGCCAAGAT
CGACCTGTTCAAGCTAGACAAGTTCATGTTGCCAATCAACGTGGCCAAGA
TCGACCTGTTCAAGCTAGACAAGTTCATGTTGCCAATCAACGTGGCCAAG
AGTCACTGGACCCTGGCGGTTATCAACTTTCGTCTACAGCGTCTGGAGTA
CTACGATTCGCTTGCACAAAAAATTGGAGACGAGGCGTTTGAGAGTCACT
GGACCCTGGCGGTTATCAACTTTCGTCTACAGCGTCTGGAGTACTACGAT
TCGCTTGCACAAAAAATTGGAGACGAGGCGTTTGAG
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