prot_H-paniculata_contig13273.2043.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13273.2043.1
Unique Nameprot_H-paniculata_contig13273.2043.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length318
Homology
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 9.610e-26
Identity = 80/228 (35.09%), Postives = 115/228 (50.44%), Query Frame = 0
Query:  107 QVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLI-----HGDRGYSPSWNLILWVAGACVTTIDAA-DGHLAGLPSNWPPVTDGDNVKYVSNC--------LRQGKFDFFISLDESGGKRS--QQQLAAAACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 318
            +++AVA P S R  ++ FAVAA + IVHP Y++   G  +  +T  YLLP+GRS L +R LIMP   + G                 PFQ + V++       D+    +W  IL V GA V  +D   +G  AG         + D V++ S C        L++G+    I  + +  + S  + ++  AA E G   GS+EWA QC+AHGR+L P A  CPWFPL
Sbjct:  819 RIIAVAAPGSDRTPEFHFAVAAGMPIVHPSYVEACSGMEIEVETGRYLLPLGRSGLGNRPLIMPFRSSRGR----------------PFQDQLVILCVDNPTVDQAALENWLFILKVGGATVRVLDVGGEGGCAG--------GNADGVEH-SRCTHDAALQLLQEGRVYCVIGSESTAVRYSAARSEIQKAAVEAGTLTGSLEWALQCMAHGRLLLPSAATCPWFPL 1021          
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: D7FH86_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH86_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.680e-24
Identity = 104/338 (30.77%), Postives = 144/338 (42.60%), Query Frame = 0
Query:   36 GRSRACDPVPARERKGVGVILTGCGKKYRR---------------IVNDLGGIE---IVFPPRTGAN-----------FLDFFSDTNGNAGARARDIDCR------------QVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLI-----HGDRGYSPSWNLILWVAGACVTTIDAADGHLAGLPSNWPPVTDGDNVKY-------VSNCLRQGKFDFFISLDESGGKRSQQQLAA--AACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 318
            G + +  P       GVGVIL G G++ R+               I+ + GG +   +    RT AN                 D NG+  A A   D R            +++AVA P S R  ++  AVAA + IVHP Y+    G  +  +T  YLLP+GRS L +R LIMP             + SG      PFQ + V++       D+    +W  +L VAGA V   D   G   G         D D V++           L++G+    I  + +  + S  + A   AA E G   GS+EWA QC+AHGR+L P A  CPWFPL
Sbjct:  531 GATHSSSPPREGPLAGVGVILAGLGEQPRQEMEAKIRNLGAEVVDILGESGGWKSWLLGESTRTVANSGSTAEPSSARHTSGSGDCNGDPCATANS-DARTPESTKLTKPQMRMIAVAAPGSDRTPEFQLAVAAGMPIVHPSYVAACSGMEIEVETGRYLLPLGRSGLGNRPLIMP-------------FRSGR---GRPFQDQLVILCVDNPAADQAALENWLFMLKVAGATVRVFDV--GGEGGCAEG-----DADGVEHSLCTHDAALQLLQEGRVYCVIGSESTAVRVSTARSAIEKAAVEAGTLAGSLEWALQCMAHGRLLLPSAATCPWFPL 844          
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: D7FW83_ECTSI (BRCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW83_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 4.860e-22
Identity = 77/232 (33.19%), Postives = 107/232 (46.12%), Query Frame = 0
Query:  106 RQVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLIHGD-----RGYSPSWNLILWVAGACVTTIDAA---------DGHLAGLPSNWPPVTDGDN--VKYVSNCLRQGKFDFFISLDESGGKRSQQQLAA---AACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 318
            R+++ VATP S R  K+  A+AA + IVHP ++              Y+LP+GRSAL DR L+MP   +  G+               PFQGKN++  GD     +    +W   L VAGA    +            D   AG  S   P T+     ++     ++ G+    I    + G  +    AA   AA  +G   GS+EWA+QCI HGR+L P A  CPWFPL
Sbjct: 1346 RRMITVATPDSDRTHKFQLALAAGMPIVHPSWVGACSSVATVIPPLGYILPLGRSALGDRGLLMPPVGSARGR---------------PFQGKNIIFCGDGLDGGKNAVDNWVFSLTVAGATAIVLHEGXXXXXXXXXDRKNAGAAS---PGTEAGQCTLEGALKLVKDGQVFCVIGPKSADGGSASASTAAVEEAAEVMGTPAGSLEWATQCIIHGRLLLPNAGTCPWFPL 1559          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JG92_9PHAE9.610e-2635.09BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FH86_ECTSI4.680e-2430.77BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FW83_ECTSI4.860e-2233.19BRCT domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 85..173
e-value: 8.0E-6
score: 28.0
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 107..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13273contigH-paniculata_contig13273:1603..2614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13273.2043.1mRNA_H-paniculata_contig13273.2043.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13273 1603..6291 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13273.2043.1 ID=prot_H-paniculata_contig13273.2043.1|Name=mRNA_H-paniculata_contig13273.2043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MAERAAVGPEHSAASSGKKRRRRCDGYDQSQCWLAGRSRACDPVPARERK
GVGVILTGCGKKYRRIVNDLGGIEIVFPPRTGANFLDFFSDTNGNAGARA
RDIDCRQVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADT
QNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNV
LIHGDRGYSPSWNLILWVAGACVTTIDAADGHLAGLPSNWPPVTDGDNVK
YVSNCLRQGKFDFFISLDESGGKRSQQQLAAAACEVGVTLGSMEWASQCI
AHGRILAPLADFCPWFPL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf