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Homology
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: A0A6H5JG92_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG92_9PHAE) HSP 1 Score: 118 bits (295), Expect = 3.980e-23 Identity = 80/228 (35.09%), Postives = 115/228 (50.44%), Query Frame = 1
Query: 2569 QVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLI-----HGDRGYSPSWNLILWVAGACVTTIDAA-DGHLAGLPSNWPPVTDGDNVKYVSNC--------LRQGKFDFFISLDESGGKRS--QQQLAAAACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 3204
+++AVA P S R ++ FAVAA + IVHP Y++ G + +T YLLP+GRS L +R LIMP + G PFQ + V++ D+ +W IL V GA V +D +G AG + D V++ S C L++G+ I + + + S + ++ AA E G GS+EWA QC+AHGR+L P A CPWFPL
Sbjct: 819 RIIAVAAPGSDRTPEFHFAVAAGMPIVHPSYVEACSGMEIEVETGRYLLPLGRSGLGNRPLIMPFRSSRGR----------------PFQDQLVILCVDNPTVDQAALENWLFILKVGGATVRVLDVGGEGGCAG--------GNADGVEH-SRCTHDAALQLLQEGRVYCVIGSESTAVRYSAARSEIQKAAVEAGTLTGSLEWALQCMAHGRLLLPSAATCPWFPL 1021
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: D7FH86_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH86_ECTSI) HSP 1 Score: 113 bits (282), Expect = 1.220e-21 Identity = 104/338 (30.77%), Postives = 144/338 (42.60%), Query Frame = 1
Query: 2356 GRSRACDPVPARERKGVGVILTGCGKKYRR---------------IVNDLGGIE---IVFPPRTGAN-----------FLDFFSDTNGNAGARARDIDCR------------QVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLI-----HGDRGYSPSWNLILWVAGACVTTIDAADGHLAGLPSNWPPVTDGDNVKY-------VSNCLRQGKFDFFISLDESGGKRSQQQLAA--AACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 3204
G + + P GVGVIL G G++ R+ I+ + GG + + RT AN D NG+ A A D R +++AVA P S R ++ AVAA + IVHP Y+ G + +T YLLP+GRS L +R LIMP + SG PFQ + V++ D+ +W +L VAGA V D G G D D V++ L++G+ I + + + S + A AA E G GS+EWA QC+AHGR+L P A CPWFPL
Sbjct: 531 GATHSSSPPREGPLAGVGVILAGLGEQPRQEMEAKIRNLGAEVVDILGESGGWKSWLLGESTRTVANSGSTAEPSSARHTSGSGDCNGDPCATANS-DARTPESTKLTKPQMRMIAVAAPGSDRTPEFQLAVAAGMPIVHPSYVAACSGMEIEVETGRYLLPLGRSGLGNRPLIMP-------------FRSGR---GRPFQDQLVILCVDNPAADQAALENWLFMLKVAGATVRVFDV--GGEGGCAEG-----DADGVEHSLCTHDAALQLLQEGRVYCVIGSESTAVRVSTARSAIEKAAVEAGTLAGSLEWALQCMAHGRLLLPSAATCPWFPL 844
BLAST of mRNA_H-paniculata_contig13273.2043.1 vs. uniprot
Match: D7FW83_ECTSI (BRCT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW83_ECTSI) HSP 1 Score: 107 bits (267), Expect = 9.970e-20 Identity = 77/232 (33.19%), Postives = 107/232 (46.12%), Query Frame = 1
Query: 2566 RQVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADTQNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNVLIHGD-----RGYSPSWNLILWVAGACVTTIDAA---------DGHLAGLPSNWPPVTDGDN--VKYVSNCLRQGKFDFFISLDESGGKRSQQQLAA---AACEVGVTLGSMEWASQCIAHGRILAPLADFCPWFPL 3204
R+++ VATP S R K+ A+AA + IVHP ++ Y+LP+GRSAL DR L+MP + G+ PFQGKN++ GD + +W L VAGA + D AG S P T+ ++ ++ G+ I + G + AA AA +G GS+EWA+QCI HGR+L P A CPWFPL
Sbjct: 1346 RRMITVATPDSDRTHKFQLALAAGMPIVHPSWVGACSSVATVIPPLGYILPLGRSALGDRGLLMPPVGSARGR---------------PFQGKNIIFCGDGLDGGKNAVDNWVFSLTVAGATAIVLHEGXXXXXXXXXDRKNAGAAS---PGTEAGQCTLEGALKLVKDGQVFCVIGPKSADGGSASASTAAVEEAAEVMGTPAGSLEWATQCIIHGRLLLPNAGTCPWFPL 1559
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 107.8 |
| Seed ortholog evalue | 9.2e-21 |
| Seed eggNOG ortholog | 2880.D7FW83 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | BRCA1 C Terminus (BRCT) domain |
| EggNOG OGs | 2CKM1@1,2S28W@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 3204 |
| Cds size | 954 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13273.2043.1 >prot_H-paniculata_contig13273.2043.1 ID=prot_H-paniculata_contig13273.2043.1|Name=mRNA_H-paniculata_contig13273.2043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MAERAAVGPEHSAASSGKKRRRRCDGYDQSQCWLAGRSRACDPVPARERK GVGVILTGCGKKYRRIVNDLGGIEIVFPPRTGANFLDFFSDTNGNAGARA RDIDCRQVLAVATPASYRKAKYMFAVAARIDIVHPLYLDHIQGARVPADT QNYLLPIGRSALSDRSLIMPHPPTFGGKRAGGQYVSGAPPDDGPFQGKNV LIHGDRGYSPSWNLILWVAGACVTTIDAADGHLAGLPSNWPPVTDGDNVK YVSNCLRQGKFDFFISLDESGGKRSQQQLAAAACEVGVTLGSMEWASQCI AHGRILAPLADFCPWFPL back to topmRNA from alignment at H-paniculata_contig13273:1603..6291- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig13273.2043.1 ID=mRNA_H-paniculata_contig13273.2043.1|Name=mRNA_H-paniculata_contig13273.2043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4689bp|location=Sequence derived from alignment at H-paniculata_contig13273:1603..6291- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTGTACTCCACTGCTGTGGCGATGTTGGTGAGCACAAGAGAGATGGGAAA
GCGGATGACGCGAATGGCCCTAAAGTCAGTGCTCTGCCCAGCGTCCGTTT
CACCAGCTCGCGTGTCGCGCACAGAGGTGCAGCTGCAAGCCCATCCGGAG
CGAGGCGCCCGTCCCCGCCCCGGCCCATGGGTCAAGGCAATGGCGTTTTT
ATCCGCAACGGTGCCCACCCACCGTCGCCTGCTAAATTAGCGACCTCTGC
GGCGACGTCGGGTAAAAGTCCTTCGCCATCGAAAGGCAGCGCCATCTCCG
ACGACGTGCCGAAGTGGACCCAGAGGACGGGTCCGGGCAGCGCCCGTGCG
GTAGAGCGACGTAGCAAGAATAACGAAGACTCTCGCGTGCGGAAGGGCTC
GTTTCAGTCGCAGAACATTCTCACGCTTGGTGTGCCGCCGGATCGCCGGG
CGTTGCCACAGGCCGGCGCGAATAGGGGGAAGAGAGATGGGGACATGCAA
GAGGTTAGAGAGTCGTCACGGGGGCAAGGGAGTCTGACAGAGGATCGAGA
AGACGGTGGAGGGAAGGAGGAAGAAGAGACACAGGAGCATGAGGGCGAAG
GACGGAAGAAGAACCGCGCCAGGGTGAGTAATTTGTTGAGCACGCAGGAA
CTGCTCGAGGATAGGACAGTCAAGCGGCTTGCAAATCGAGCGCCCAGTAC
GCTCGCGACTGTCATGGGAAGGGCTGGAGCACGACTGCACGAGACAACAA
GGTAGGCGGCGGGTATGAAGTCACAGGGTACTGTGCTGTTGTCGGGCATT
ACTCTGCCTTGAAGATACGATTGTATAACCCGTGTTTTGCGGGGATCGGA
AATCGGGGCTTGGTACTTGTTACCGGGTCGTGGGCTTAAGCTCCTCTCCT
CACAACGCTTCCGAGTGGTGTATATAGAGGTTGCACACTCTGGGGTGGAA
AGAAAGGAAAGGTACCCTGTATGAGATTTGATCATCATCTACTGTGTATA
TTGGCAATGTTCCTCTATCCCTGAAACGTTCAAATGATGTCCAAAAGTGT
AACGGTAGGGGGGCGTTGCCTCAAAAGGATCTACTCTTATCACATGCTTT
TACGGCTTTCGAAACTGTTCAGGCATGAAGGAACATTTCCAAGAGCTTGT
GATGGTTGAATGTATGATAAATTATCAGCTGGGACACTTAGCTGTTTTTG
ATTTCATGCGTCGAGGTTCTGAATTCCGAATCCAATTCTGCTGATGCATG
TCTTTCCCTAGATATGCCGGAGGCATACTGCCTCGCACGCTCTCCTCTCT
TTCTTTTTACCAAGGTCTTTACAGAATACAGGGCTATTGCAAACTGACAG
TTGATGTTCAAAGATTTGGAGGACTGTCTTTTGTCTTTTGTATCTTATAG
TTTGTATTTTTATATTTCTATCCTTTGAAGTCTCTTCCTTTTCTTTTTCT
CGGGGAAACCAATCCGTTTGTTCAAAAGTGCTGCTATTTCCAGGTAGTTC
TCTTTCTCGATTTAAAAAATAGATGGAAGCCGAAAAATCGTATTTGTTCT
GCGTCCGGCGACACTTACAGCGGGGCCCCCTCGCCAGCCGAGAGGGCGAG
CAGAGCGTGACTTCGCCACGTCGCTTCCCAGGCAACATGACAGTACATGG
CCCTAGTCGTTTTGTTTATGCTGCATGGAACTCACAACAAGTTCGTATAA
TACGATATAACACTGTTTCGGCCTTGTCACCCAAACCTACGATGATAGAG
GAGGTACGTTTTGCATCGTTGTCAATGCTGTGGGTGATAAGTCTTGCTTT
TATGTACTGTAGGGTGCATGCCAACTGATTAAAACAATATTTTCGTCACC
AGGAAATAAGGGGCCTGCTCGTGTTCAGGCGCCAAGCGCCATGTATTGTT
GCACTATTAACTCCGATCCGTTACAGCATAACCGTGTGACAGCACGGTTA
CCGTTGGTTTATTAGTACACGAAACGAAATAGCAGTACTGCAACTGCTCA
GTCGCAACGCGTGTGCCGTTGAATGTTATTCTTGGCGGTATTTGCGCAAC
AGAAGACGAAAACGCACCAAGACGTGCCGGACAATCATCCTGTTAAGTGA
GCTACTCGATACTCACAGCTCCTCCGTTTGCCGGACTATTTCCCTTACCT
GTGACTGATTTCTCGCAGTCCCAGTTCCACCGAGAGTCCGCAAGGTAACA
GCGATGATATATTCCAGGTCAACGATGACGAAGACTCTGACGACGGACGA
GTTTTACGGAGCCCTGAAAAGCGTGGTAATGGGAGCTCCCGAGGCAGGAA
CCAGAAAAAGGGGGCGAAGAACAAGGCTTTTCCATCGCGTCCTGCTGCAA
GCAGTGCGACCTACAATGGTGAGGGTGGTGAAACGGCTAATCGCGTCCGT
GTTCGCGTCTGCGCCCCTTCTACTATCGCTGGAACAGCCGCTACCAAAAC
ACACGGCATGCCAGACCCCAGCCACGATAGACCCCATCATTCGCCGCAAA
CGTGTCCACAGCGTGCAAGGGCCATGTCGTCTGGTTCAGGCTCTGGCTCT
GGCCGCGATGACGCTGGTGCTGAGGAGGAGGAGAACGCGGCAGACGTACC
TGTCGGCGCGGAAAGCGCAAATACCTCTACCTCCGCACCGAACCGGATTC
CCGCCGCTGGCGATCCCGCTCTAGCGATCGCGGAACCTGCCCGTGCTCCT
GTAACCCGGCCTACTCGGCGCATGCGCCCTGTCCGCGCCTCGGCCGGTGG
CTCAACGGCCGCGCCCTCGTCTTTGCAAGGGACTGGGACAGCGAGTGGCA
TATCCCACAGCAGCATCTGGCGTGTCCTGTGGGATTTTCTCAAAGTCGAG
GAAGGGTGGACCTTCACGAAAGGAAAAGGTCTGATCGATTTCATATACAT
CATGCCTTCTAAGGAAGGGCGCCCCTCGATGAGCTTCACGCACCCGGATG
ATGTGTGCGCCTATGCGCGTGGAAACAGCGACCTCTTCGCTCGATTTCAG
GCCATGGAGGCGGAGAATCTCGTGCGGCAGGATGGTAACGGTAGTGGTGT
TGGCCGTAACAGCAGAACGGGTCCTGCAGCGAAAAAAAATAACAGCTCCA
AGGCCAGGGAGACTCGTTGTGGCGCTGGCGTTGGCGCTGGGAGGAGCATC
GCCGCTTCCAGCGAATCTGAGACTGACACAGATGGGGAAGGAAACATCGG
CCAACCGAACGGATCCGCAGTGAGACAAGGGGCAAGCACTACTTCCGAAA
CCCGGCTTCCTGGTTCCGGAAAACTCAAATTGAGCGTAGTTCGAAAGGAC
AGAGAAAATGGGGTGCCTGCTACAGCTGCTTCGAGGGCTAACTTCGCTAC
GGCAAACAGACGCGGGCCGAAGGGTATGAAGAAAGACTCTGGGCGTGATC
CTTCCGGAGCAGCAACGGCAGCCAGGCGCGGGCCCGAGCAACCGCGGAAT
AAAGCCCCGGGTCGGCTCTCGAAAAAGCGTTCCGCCGATGGCCAGCGATC
GAAGCCGATAAAAAAAAAGAGACAGGGATTGCGGGAAGAAGATGCATGCC
AGTCCGATGTAGCAGAGAATGTGCGCTATGGAGATCAGGAGATGCGAAGG
GAAGAGGCTGCCAATGACTACAATTTGCATCAGAACGACAGCGACGATAG
CGACGACGATTCGGACCGGCCAATCCAATGGCAGAACGAGCTGCAGTCGG
CCCTGAACACAGCGCAGCTTCTTCAGGAAAGAAACGTCGCCGCCGTTGCG
ACGGCTACGATCAAAGCCAGTGTTGGTTGGCCGGCCGCTCCCGCGCGTGC
GACCCCGTTCCTGCACGTGAGCGATGATCGGAGTGGCGAAAACAGGCGCA
ACTCCAGTGTAGAATCTGGTCCCCACCCCCTGAAAGGTGTAGGTGTAATT
CTCACGGGCTGCGGAAAAAAGTACCGTCGCATCGTTAATGATCTAGGAGG
AATCGAGATTGTATTTCCTCCCAGAACAGGCGCCAACTTTCTTGATTTTT
TCTCTGACACCAACGGAAACGCGGGCGCAAGGGCGCGGGATATCGACTGC
CGGCAAGTCCTTGCCGTGGCCACACCAGCGAGTTACCGCAAGGCGAAGTA
TATGTTCGCGGTGGCGGCCAGGATCGATATCGTGCACCCCCTCTACCTCG
ATCATATCCAAGGTGCACGAGTCCCTGCGGACACCCAGAATTACCTGCTG
CCTATCGGGCGCTCGGCCCTATCAGACCGCAGCCTCATCATGCCGCATCC
CCCGACATTTGGTGGGAAGAGGGCCGGTGGGCAGTACGTCAGTGGTGCCC
CCCCCGACGATGGTCCCTTTCAAGGCAAAAATGTGCTTATACACGGCGAT
CGGGGCTACTCGCCCAGCTGGAACCTAATATTATGGGTGGCGGGCGCATG
CGTGACTACCATCGACGCGGCCGACGGTCACCTGGCTGGACTGCCGAGCA
ACTGGCCCCCTGTGACAGACGGAGATAACGTCAAATACGTCTCGAACTGT
CTGAGACAGGGCAAGTTCGACTTCTTCATCAGTCTTGACGAGAGCGGGGG
CAAACGGTCGCAACAACAGCTGGCTGCTGCCGCTTGTGAGGTCGGTGTTA
CACTGGGCAGCATGGAGTGGGCTTCCCAATGCATCGCGCATGGGCGCATA
CTGGCACCTTTGGCGGACTTTTGCCCCTGGTTTCCGTTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig13273:1603..6291- >mRNA_H-paniculata_contig13273.2043.1 ID=mRNA_H-paniculata_contig13273.2043.1|Name=mRNA_H-paniculata_contig13273.2043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig13273:1603..6291- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCAGAACGAGCTGCAGTCGGCCCTGAACACAGCGCAGCTTCTTCAGG AAAGAAACGTCGCCGCCGTTGCGACGGCTACGATCAAAGCCAGTGTTGGT TGGCCGGCCGCTCCCGCGCGTGCGACCCCGTTCCTGCACGTGAGCGATGG CAGAACGAGCTGCAGTCGGCCCTGAACACAGCGCAGCTTCTTCAGGAAAG AAACGTCGCCGCCGTTGCGACGGCTACGATCAAAGCCAGTGTTGGTTGGC CGGCCGCTCCCGCGCGTGCGACCCCGTTCCTGCACGTGAGCGGAAAGGTG TAGGTGTAATTCTCACGGGCTGCGGAAAAAAGTACCGTCGCATCGTTAAT GATCTAGGAGGAATCGAGATTGTATTTCCTCCCAGAACAGGCGCCAACTT TCTTGATTTTTTCTCTGACACCAACGGAAACGCGGGCGCAAGGGCGCGGG ATATCGACTGCCGGCAAGTCCTTGCCGTGGCCACACCAGCGAGTTACCGC AAGGCGAAGTATATGTTCGCGGTGGCGGCCAGGATCGATATCGTGCACCC CCTCTACCTCGATCATATCCAAGGTGCACGAGTCCCTGCGGACACCCAGA ATTACCTGCTGCCTATCGGGCGCTCGGCCCTATCAGACCGCAGCCTCATC ATGCCGCATCCCCCGACATTTGGTGGGAAGAGGGCCGGTGGGCAGTACGT CAGTGGTGCCCCCCCCGACGATGGTCCCTTTCAAGGCAAAAATGTGCTTA TACACGGCGATCGGGGCTACTCGCCCAGCTGGAACCTAATATTATGGGTG GCGGGCGCATGCGTGACTACCATCGACGCGGCCGACGGTCACCTGGCTGG ACTGCCGAGCAACTGGCCCCCTGTGACAGACGGAGATAACGTCAAATACG TCTCGAACTGTCTGAGACAGGGCAAGTTCGACTTCTTCATCAGTCTTGAC GAGAGCGGGGGCAAACGGTCGCAACAACAGCTGGCTGCTGCCGCTTGTGA GGTCGGTGTTACACTGGGCAGCATGGAGTGGGCTTCCCAATGCATCGCGC ATGGGCGCATACTGGCACCTTTGGCGGACTTTTGCCCCTGGTTTCCGTTG GAAAGGTGTAGGTGTAATTCTCACGGGCTGCGGAAAAAAGTACCGTCGCA TCGTTAATGATCTAGGAGGAATCGAGATTGTATTTCCTCCCAGAACAGGC GCCAACTTTCTTGATTTTTTCTCTGACACCAACGGAAACGCGGGCGCAAG GGCGCGGGATATCGACTGCCGGCAAGTCCTTGCCGTGGCCACACCAGCGA GTTACCGCAAGGCGAAGTATATGTTCGCGGTGGCGGCCAGGATCGATATC GTGCACCCCCTCTACCTCGATCATATCCAAGGTGCACGAGTCCCTGCGGA CACCCAGAATTACCTGCTGCCTATCGGGCGCTCGGCCCTATCAGACCGCA GCCTCATCATGCCGCATCCCCCGACATTTGGTGGGAAGAGGGCCGGTGGG CAGTACGTCAGTGGTGCCCCCCCCGACGATGGTCCCTTTCAAGGCAAAAA TGTGCTTATACACGGCGATCGGGGCTACTCGCCCAGCTGGAACCTAATAT TATGGGTGGCGGGCGCATGCGTGACTACCATCGACGCGGCCGACGGTCAC CTGGCTGGACTGCCGAGCAACTGGCCCCCTGTGACAGACGGAGATAACGT CAAATACGTCTCGAACTGTCTGAGACAGGGCAAGTTCGACTTCTTCATCA GTCTTGACGAGAGCGGGGGCAAACGGTCGCAACAACAGCTGGCTGCTGCC GCTTGTGAGGTCGGTGTTACACTGGGCAGCATGGAGTGGGCTTCCCAATG CATCGCGCATGGGCGCATACTGGCACCTTTGGCGGACTTTTGCCCCTGGT TTCCGTTG back to top
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