mRNA_H-paniculata_contig13265.2039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 103 bits (256), Expect = 4.420e-22 Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ +S+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 37 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 140
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.220e-21 Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query: 2 FWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 301
F + S RR + + FPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VRQ++ KLEE+ Q+GVAV GG E + + A+ HQ G W+I
Sbjct: 579 FCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWII 678
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 104 bits (260), Expect = 4.090e-21 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 36 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 139
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE) HSP 1 Score: 104 bits (260), Expect = 4.440e-21 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 355 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 458
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 104 bits (260), Expect = 4.720e-21 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 426 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 529
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 5.160e-21 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = -1
Query: 2 VGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 289
+ S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 1 MSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 96
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 104 bits (260), Expect = 5.240e-21 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 405 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 508
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 102 bits (255), Expect = 7.750e-21 Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 127 GREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVV 230
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 103 bits (258), Expect = 8.140e-21 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR ++ AFPP+FW L QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ HQ G W++
Sbjct: 404 GREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVV 507
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 101 bits (251), Expect = 8.430e-21 Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = -1
Query: 2 GYGRFWPVVGSFSRRSMEQADAFPPDFWELFLQSNLTPLGEKCRPICVGSTMRCTLAAGVVRQYRRKLEEVNLSERQYGVAVLGGAELMGLRAKTHHQLGRWLI 313
G F + S RR + +AFPP+FW L+ QS+L LGEKCRP+C+G T R +AAG VR+++ KLEE+ Q+GVAV GG E + + A+ Q G W++
Sbjct: 82 GREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVV 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13265.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13265.2039.1 >prot_H-paniculata_contig13265.2039.1 ID=prot_H-paniculata_contig13265.2039.1|Name=mRNA_H-paniculata_contig13265.2039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp MVCFRAEAHELRATQDRYPVLPLRQVNLLQFPPVLPDHPSGQSTPHRRSYback to top mRNA from alignment at H-paniculata_contig13265:1965..2967+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13265.2039.1 ID=mRNA_H-paniculata_contig13265.2039.1|Name=mRNA_H-paniculata_contig13265.2039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-paniculata_contig13265:1965..2967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13265:1965..2967+ >mRNA_H-paniculata_contig13265.2039.1 ID=mRNA_H-paniculata_contig13265.2039.1|Name=mRNA_H-paniculata_contig13265.2039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig13265:1965..2967+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |