mRNA_H-paniculata_contig13262.2038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13262.2038.1
Unique NamemRNA_H-paniculata_contig13262.2038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A835YQR3_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQR3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.460e-58
Identity = 114/201 (56.72%), Postives = 133/201 (66.17%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAEG 603
            VERVGQ LA+G L+DI AVPTSE+T   A  L IPL TL++ P+L VAIDGADT    T  LVKGG                 +VIVD+SK++EGLG  F LPVEIIQ+   H+RRQ+E LPSL GC+A LR+     PYVTDNGNYI DL F  PIA P QAA E+S  VGVVEHGLFLDMA+  ++A   GV    A G
Sbjct:   89 VERVGQLLANGKLKDIVAVPTSERTRAHAAQLSIPLATLDEHPALDVAIDGADTVDRGTLALVKGGGGALLREKIVEVAAKKLVVIVDESKLSEGLGPHFDLPVEIIQFCQTHIRRQIEGLPSLKGCKANLRM-----PYVTDNGNYIADLKFDAPIADPSQAAAELSDTVGVVEHGLFLDMASVCIIAGKDGVTTTHAPG 284
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A836CI02_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI02_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.050e-57
Identity = 112/198 (56.57%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVIT 594
            VER+GQ L  G L+DI A+PTS +T EQA  LGIPLTTL+  P++ VAIDGADT    T  LVKGG                FIVIVD+SK+A+G+G  F LPVEIIQ+ HEH+RR+VE+LPSL GC+A LR+  D+ PYVTDN NYIVD  F  PI  P QA  E+  VVGVVEHGLFL M T  ++A   G+ V T
Sbjct:   79 VERLGQLLKDGTLKDIIAIPTSIRTKEQAEGLGIPLTTLDSHPNIDVAIDGADTVDNATLALVKGGGGALLREKIVEVQAKEFIVIVDESKMADGVGPHFDLPVEIIQFCHEHIRREVENLPSLKGCKAVLRMSGDK-PYVTDNANYIVDCKFDTPIKDPVQAGAELLNVVGVVEHGLFLGMTTACIIAGKDGISVKT 275
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A7S1AKJ2_NOCSC (Ribose-5-phosphate isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKJ2_NOCSC)

HSP 1 Score: 189 bits (479), Expect = 1.820e-51
Identity = 107/203 (52.71%), Postives = 132/203 (65.02%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQS-------PYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRV 588
            VERVGQ+L SG+L DI AVPTS +T EQA SLGIPLTTL+    L VAIDGAD  V     LVKGG                FIVIVD+SK+ EGLG  F +PVEI+ +  EH  R++ +LP+L+GC+  LRL +  +       P VTDNGNYIVDL F+ P+A P++AA ++ AV GVVEHGLF  MAT  +VA   G+ V
Sbjct:   38 VERVGQKLKSGELVDILAVPTSIRTKEQAESLGIPLTTLDSHSDLDVAIDGAD-GVDPALNLVKGGGGAHFREKIVELSAKKFIVIVDESKLVEGLGPGFPVPVEIVPFCCEHTIRKIAALPALAGCEPVLRLGDAANNKCDGDRPAVTDNGNYIVDLKFKAPLADPREAAQQLKAVCGVVEHGLFCGMATACIVAGKDGISV 239
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 189 bits (481), Expect = 3.800e-51
Identity = 104/198 (52.53%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVIT 594
            VER+GQ+L SG+L+DI A+PTS +T EQA SL IPL TL+  P L VAIDGAD  V +   LVKG                 FIVIVDDSK+  GLG + A+PVE+  + +EH  ++++  PSL+GC AKLR+ + + PYVTDN NYIVDL+F KPIA   +AA E+  +VGVVEHGLFLDM T +++A   GV + T
Sbjct:   93 VERLGQKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPVLDVAIDGADE-VDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVPGLGVSGAMPVEVTPFCYEHTLKRLKDAPSLAGCDAKLRM-DGEKPYVTDNDNYIVDLYFEKPIADANKAAEEMINMVGVVEHGLFLDMTTAVLIAGKNGVEMKT 288
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A482SU09_9ARCH (Ribose-5-phosphate isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU09_9ARCH)

HSP 1 Score: 187 bits (474), Expect = 5.680e-51
Identity = 106/208 (50.96%), Postives = 132/208 (63.46%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRL-------KEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAEG 603
            VERVGQ+L SG+L ++  +PTSE+T EQA  LGIPL TLN+   L V IDGAD  V     LVKGG                FI IVD+SK+++GLG  F LPVEI  + HEH  R ++SLPSL+GC+A LR+       K+  +  +TDNGNYIVDL+F  PI   QQAA E+   VGVVEHGLF+ MAT ++VA   G+RV    G
Sbjct:   15 VERVGQKLKSGELNNVICIPTSERTKEQAVKLGIPLVTLNEKSKLDVVIDGADD-VDVHLNLVKGGGGALLREKMVEVVADKFICIVDESKLSKGLGPHFPLPVEITPFCHEHTLRVIQSLPSLTGCKAVLRMGNVANNKKDGDNIAITDNGNYIVDLYFTAPIRDVQQAAKELKNTVGVVEHGLFVKMATAVIVAGKDGIRVAGKGG 221
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: K8ESN8_9CHLO (Ribose-5-phosphate isomerase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ESN8_9CHLO)

HSP 1 Score: 189 bits (480), Expect = 5.730e-51
Identity = 104/208 (50.00%), Postives = 133/208 (63.94%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRL-------KEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAEG 603
            VER+GQ+L SG+L+DI A+PTSE+T EQA SLGIPL TLN+   L VAIDGAD  V     LVKGG                FIVIVD+SK+ +GLG  F LPVEI  + HEH  R +  LPSL+GC+A +R+        +  +  VTDNGNYIVDLHF+ PI    +AA ++   VGVV+HGLF+ M+  ++VA   G+RV   +G
Sbjct:   81 VERLGQKLKSGELKDIVAIPTSERTREQAESLGIPLCTLNEKSKLDVAIDGADE-VDPDLALVKGGGGALLREKMVEVMAKKFIVIVDESKLCKGLGPGFPLPVEITPFCHEHTARTIAELPSLAGCEAVIRMGSSSTNKPDGDNVAVTDNGNYIVDLHFKAPIKDVNKAASDLKNTVGVVDHGLFVGMSYQVIVAGSDGIRVAGTDG 287
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A0A6T6DAD6_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DAD6_9RHOD)

HSP 1 Score: 188 bits (477), Expect = 1.800e-50
Identity = 102/198 (51.52%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVIT 594
            VER+GQ+LASG+L+DI A+PTS +T +QA  L IPL TL+  P L VAIDGAD   +E   LVKG                 FIVIVDDSK+  GLG + A+PVEI  +  +H   ++ + P+L+GC AKLR+  + +PYVTDN NYIVDL+F  PI  P+ AA EI+++VG+VEHGLFLDM T  ++A  GG+ V T
Sbjct:  101 VERLGQKLASGELKDIVAIPTSIRTKDQAEGLKIPLVTLDTHPILDVAIDGADEVDSE-LNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVSGLGISGAMPVEITPFCWQHSLNRLLNAPTLAGCTAKLRMDANGNPYVTDNDNYIVDLYFDTPIKDPKAAAEEINSMVGIVEHGLFLDMTTACIIAKSGGIEVKT 297
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: M1VF90_CYAM1 (Ribose-5-phosphate isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VF90_CYAM1)

HSP 1 Score: 187 bits (475), Expect = 3.960e-50
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGV 582
            VER+GQ+LA+G L+DI+ VPTS +T EQARSL IPLTTL++D  L VAIDGAD  V     LVKG                 FIVIVD+SK+  GLG + A+PVE+  +  +H  R++ +LP+L+GC+A+ R     + YVTDNGNYIVDL+F KPIA   QAA  +   VGVVEHGLFLDMA+ ++VA   GV
Sbjct:  106 VERLGQKLAAGALRDIRCVPTSVRTEEQARSLNIPLTTLDEDAELDVAIDGADE-VDSALNLVKGRGGALLREKMVEVCAKQFIVIVDESKLVPGLGVSGAMPVEVTPFCWQHTMRKIAALPALAGCRAEARRDAAGALYVTDNGNYIVDLYFEKPIADAYQAAQALRDTVGVVEHGLFLDMASVVIVAGAQGV 298
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BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: A4RY01_OSTLU (Ribose-5-phosphate isomerase n=3 Tax=Ostreococcus TaxID=70447 RepID=A4RY01_OSTLU)

HSP 1 Score: 185 bits (470), Expect = 4.320e-50
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRL-------KEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAEG 603
            VERVGQ+LASG+L+D+  +PTSE+T EQA SL IPL TLN+   L VAIDGAD  V     LVKGG                F+VIVD+SK+ +GLG  F LPVEI  + H H  R +  LP+L+GC+  LR+        +  +  VTDNGNYIVDLHF+ P+A P  AA ++   VGVV+HGLF+ MA  ++VA   G+RV   +G
Sbjct:   39 VERVGQKLASGELKDVICIPTSERTREQAESLNIPLCTLNEKSELDVAIDGADE-VDPALALVKGGGGALLREKMVEVMAKKFVVIVDESKLCKGLGPGFPLPVEITPFCHMHTLRTIGKLPALAGCEPILRMGSSSNNKNDGDNIAVTDNGNYIVDLHFKTPLADPVAAANQLKNTVGVVDHGLFVGMAYQVIVAGSDGIRVAGTDG 245
[Close]
BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Match: C1E203_MICCC (Ribose-5-phosphate isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E203_MICCC)

HSP 1 Score: 183 bits (465), Expect = 1.060e-49
Identity = 101/208 (48.56%), Postives = 134/208 (64.42%), Query Frame = 1 
Query:    1 VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAIDGADTAVAETFGLVKGGXXXXXXXXXXXXXXXXFIVIVDDSKIAEGLGAAFALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRL-------KEDQSPYVTDNGNYIVDLHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAEG 603
            VER+G++L SG+L+DI A+PTSE+T EQA SLGIPL TLN+   L VAIDGAD  V     LVKGG                F+VIVD+SK+ +GLG  F LPVEI  + H H  R + +LPS++GC+A LR+        +  +  VTDNGNYIVDLHF++PI    +AA E+   VGVV+HGLF+ M+  ++VA   G++V   +G
Sbjct:   15 VERLGEKLKSGELKDIIAIPTSERTREQAESLGIPLCTLNEKSVLDVAIDGADE-VDPDLALVKGGGGALLREKMVEVMAKKFVVIVDESKLCKGLGPGFPLPVEITPFCHMHTLRTIAALPSVAGCEAVLRMGSSSTNKPDGDNIAVTDNGNYIVDLHFKEPIKDVNKAAEELKNTVGVVDHGLFVGMSYQVIVAGKDGIKVAGTDG 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13262.2038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQR3_9STRA3.460e-5856.72Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
A0A836CI02_9STRA1.050e-5756.57Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
A0A7S1AKJ2_NOCSC1.820e-5152.71Ribose-5-phosphate isomerase n=1 Tax=Noctiluca sci... [more]
A0A7S0T664_9RHOD3.800e-5152.53Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A482SU09_9ARCH5.680e-5150.96Ribose-5-phosphate isomerase n=1 Tax=archaeon TaxI... [more]
K8ESN8_9CHLO5.730e-5150.00Ribose-5-phosphate isomerase n=1 Tax=Bathycoccus p... [more]
A0A6T6DAD6_9RHOD1.800e-5051.52Ribose-5-phosphate isomerase n=1 Tax=Compsopogon c... [more]
M1VF90_CYAM13.960e-5053.09Ribose-5-phosphate isomerase n=1 Tax=Cyanidioschyz... [more]
A4RY01_OSTLU4.320e-5049.04Ribose-5-phosphate isomerase n=3 Tax=Ostreococcus ... [more]
C1E203_MICCC1.060e-4948.56Ribose-5-phosphate isomerase n=1 Tax=Micromonas co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13262contigH-paniculata_contig13262:853..5099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score189.1
Seed ortholog evalue2e-45
Seed eggNOG ortholog41875.XP_007513978.1
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0019253,GO:0019685,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0071704,GO:0098542,GO:1901576
EggNOG free text desc.Ribose-5-phosphate isomerase
EggNOG OGs34HQ9@3041,37IAG@33090,COG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size2221
Cds size609
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13262.2038.1prot_H-paniculata_contig13262.2038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13262 853..3487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.8669178-CDS-H-paniculata_contig13262:852..11511622929049.8669178-CDS-H-paniculata_contig13262:852..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 853..1151 +
1691480712.3661427-CDS-H-paniculata_contig13262:852..11511691480712.3661427-CDS-H-paniculata_contig13262:852..1151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 853..1151 +
1622929049.883937-CDS-H-paniculata_contig13262:2354..25161622929049.883937-CDS-H-paniculata_contig13262:2354..2516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 2355..2516 +
1691480712.3774743-CDS-H-paniculata_contig13262:2354..25161691480712.3774743-CDS-H-paniculata_contig13262:2354..2516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 2355..2516 +
1622929049.8994489-CDS-H-paniculata_contig13262:3339..34871622929049.8994489-CDS-H-paniculata_contig13262:3339..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 3340..3487 +
1691480712.3862984-CDS-H-paniculata_contig13262:3339..34871691480712.3862984-CDS-H-paniculata_contig13262:3339..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13262 3340..3487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.9246993-UTR-H-paniculata_contig13262:3487..50991622929049.9246993-UTR-H-paniculata_contig13262:3487..5099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13262 3488..5099 +
1691480712.394726-UTR-H-paniculata_contig13262:3487..50991691480712.394726-UTR-H-paniculata_contig13262:3487..5099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13262 3488..5099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13262.2038.1

>prot_H-paniculata_contig13262.2038.1 ID=prot_H-paniculata_contig13262.2038.1|Name=mRNA_H-paniculata_contig13262.2038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
VERVGQRLASGDLQDIKAVPTSEKTAEQARSLGIPLTTLNKDPSLSVAID
GADTAVAETFGLVKGGGGALLREKLVAAAAQDFIVIVDDSKIAEGLGAAF
ALPVEIIQYAHEHVRRQVESLPSLSGCQAKLRLKEDQSPYVTDNGNYIVD
LHFRKPIAVPQQAAIEISAVVGVVEHGLFLDMATTMVVAAPGGVRVITAE
GL*
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mRNA from alignment at H-paniculata_contig13262:853..5099+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13262.2038.1 ID=mRNA_H-paniculata_contig13262.2038.1|Name=mRNA_H-paniculata_contig13262.2038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4247bp|location=Sequence derived from alignment at H-paniculata_contig13262:853..5099+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAACGCGTAGGCCAAAGGCTAGCATCGGGAGATCTTCAAGACATCAA
GGCCGTTCCAACTTCAGAGAAAACGGCCGAGCAGGCGCGGTCGCTGGGCA
TACCACTCACGACGTTGAACAAAGACCCGTCGCTAAGCGTAGCAATTGAC
GGCGCAGACACCGCCGTTGCCGAGACGTTCGGTCTGGTAAAAGGCGGTGG
CGGAGCATTGTTGAGGGAAAAGCTGGTTGCTGCCGCTGCCCAGGACTTCA
TAGTGATCGTAGATGACTCCAAGATTGCAGAAGGTCTAGGCGCGGCATTG
TGAGTGATGTAACTGAAATGCACATCGGAGTATAATGACCAAGTGGTAGA
GATGTAGAGAGTAAAGGAACCCTCGATTAATCGACCGTTTATCGAGGGTA
TTGCGCCTTGAAGGAAGCGTCCCGTTTCATGGCTGCCGAAGGATATTGAA
TTAAAGATTTAGCAAGTCATACCGATCGTGGTGCGCGAGAACGTTTGTCA
GACAGAGATAGTCATGCCTTTGGTGATTTTAAAGTACCATCATCGAAAAA
ATTGGTTTGAAATATTCGATGGACACTGCGTTGATTTTGATAGTTGTGTC
GACGTGGCATGCGGTCACTCCTCGTCGGCATTGCGATGCAAGTGTTTGGA
TTGTGACTGTGGACGGGATCGAAGATCGTCGTTGCAGAGAAGGGGTTGGT
GCTTCGACAGGCGCGGTTCGACAATGTTTCTATGGTGTGGGAATTGCCAT
CCAAGACGTAGTTGATTTGATCGACGTTTGTCCCTGGTGAAACTGCATCC
TTGTGACCCTTTCGAGAAAACACCAGTGCAGAAATACGGTTATTCATCGC
ACTGAATCTGTACACCTCAACGGGCGTCGGTCGTGGCTACCGGCCACCGC
ATCCCCACCAACGTGACACCATGCAGGCCCTGACGAATCGGGCCACGGTA
GGTGGGTGGGAGGAGGTACTTTGAGTCGATGTGTTTCAAGTTTTAAGCGG
CACTACAGAGCGGCGCGGCAAAATATTGTTTCCCCTTTGAGCAGTACGAT
CATTCCGAGTCGTGCACGATGCACCTGTGGTGATGCGTGAACGCATCATG
CGTGAACGTATGCCATTGGATAGGTTTTCACTGGGGCTTTGTCTTGAGGC
ACTTTGCAGAGTAGTGCTCGTTAAACACCTTCCCCCTCCTACCGTAGCCC
TACTCCGACACTGGTGCCAAGGACCACACCCTGCACGTAGTCCGCTCAAT
GGTGCCCATTGTTCTCTCGTTTTCGTTCCTACTGCACCATATCCAAGGAG
CGAAATACTTTTTACAGTTTTTTGCGTGCCCTATGTTTCTGTTTTCTCCG
GTGATCGCTACGGATATGTATAGCACAACAAAAATTCTCGTAAAAATTTA
ACTCCAGGCCAGCAAGTTACTTTGCTTTTATCCTAAATGCACCACGCTAC
CGTCCGTGTGTTTATTGTGCCCCCGTATGCAACTTCCCCGTGCCGAGGAA
AGCGCGTTACCTGTGGAAATTATCCAATACGCCCACGAGCACGTCCGCCG
ACAAGTGGAATCTCTGCCCAGCCTGAGCGGCTGCCAGGCGAAGCTGAGGC
TGAAGGAGGATCAATCTCCTTACGTGACCGACAATGGAAATTATATCGTT
GATCTTCATTTTCGGTCAGTCCTTTTCGTATGTGTGTATGTGTTTTGCAA
ACACACTTTCCGATCGCCCCGGTGCTCTCGCGCCCCGCGCTCCTTAAAGG
ATAGTGTACGTTCATATTTATAATTTAAGACGCGGTACATGTGATTGGAG
CTAAAATCATACCGCTAAAGTTTTGCCATACGCGTGTATGTCTGAGTCAT
ACATTTAGACTTCATGCTAATACAAACACTGCGTCGTGCCGTCGTCTCAA
CATCTCTTGCTATAATAAAAGTAATTAGTTACGCGTTTCTATACGCAAAT
ATATTAGAAAGGACACCGTTCGGTTATCGTCTGCTATTTCGGAATTACTT
GTTCACTGTCAAGCCTTGCCTTCCCGATACAGCTCTGTTCACTTATGCTG
TCATGTTACCACTCCCCTCTACCCTTTTTTCGCTTGAACACGCGATAATG
AAGGTAGATAGGGTAGGGAAATTGTTTTTAGAGACACATTTGGCAATCTA
GGGAAGAGCGATTGGTCATTATCCATCGGAAATCACTCTGATAGGAACAA
AGTTTCATCCCCCCAAAGACGCGTGGTCAATCGTCGAAAGACTACGATAT
GCAAAACACGACTACCCCCCCCCCCAACCCCTTTTGTTCTTTCAGACACA
CGCAAAATTGTGTTTGAAGGTAGATGTATGTAATACCGAAGATTGACCTA
CATTTACCACCAACATTTCCCGTTTGCTAATTAATTCACCAATAGATGCA
TTTCGATACCTTGTGGCGGCGGTTCACGTTGTGTTGTGGTTTTGATATTT
CTGCTAATGTTTTCGCCGTGTTGAACCTACAAACCAGCAAACCCATCGCT
GTCCCGCAGCAAGCGGCGATCGAGATTTCTGCCGTAGTGGGCGTAGTCGA
GCATGGGCTGTTCTTGGACATGGCCACCACCATGGTTGTCGCTGCTCCTG
GGGGGGTGCGAGTCATCACAGCGGAAGGACTTTGATCAATGTGTGCGATT
ACTTTAGCAGTAGAGCCCCTCCCAAAAGTGTCGTCGTTAGATTGGATTGG
GAGGCAAACGCGGCGGCATCGAAGCTAGAGGGGGAAGAGTGGGGGGGGCA
TAGTCATGTTTTGCATGTCGTAGTTGTGAGGCCATTGACCACACGTTCTC
GGGAGGACCGAGCTTTGTTCCTATTCGAGAGATTTCCAATGACGATTCAT
TCTTTCTTACGTTGTCAAATGTGGCTCGAAAATGTTGCCGGCGGGAGGAG
CAATTTGTTTTTTCCAATTTATTCATGTCTTCAGTCATTTCAGGTGGCCG
ATAGCTCACTTTTACGATACATATACCTGATGTTATTGTAGTGACAAACA
GGGGGTACTGCACCGGACGCATTGCTTGTGTGGTTGTATGATATGCATGC
AGAGCTTGCGTTTTTTCAAATCTGCGTGTACTATCGGAAACTGCATTATT
ACGTGTCGAGAAAGGGAGTCGCCGAGAGGAGGGGGGCGCTCGGTCGAGTG
TTTCACGTATACCTCAGCTTCCATGGTTACGTATTTGAGTTTTGCAGGAT
CGGGAGTGTCCTAGGGCATGTGGTAATGATAAGGTGCAACATAGAACAAG
ACATAGCTCATGGTGTGTTCACTACCTGCAGAAGTGATTGCAGAATATAT
CTGTCACGAGGAGGCGATTATCTGTCGGCGTGGTGCCTGCTATTAACAGA
AGAAATTGACGCATTGGGATAAAGGAGGGCACACCAACGTGATGCGACAG
CGAGTAGTGACGCCACTGAAATACGATATCTATCTGTCTATCGGCAGGAC
AATTTATTTGATGCATCGAGGAAAAGACTGGGCACTAGAGTAGGACACAC
GGCGTTTCAATGTACCTATTGATGTAGTGGAAATCGTGGAAGGGTTTGCT
ACTAAAAGAAGGTGGTGAGGAGGGAGGACTCCGCCTTTGCCGTCTGGATT
GGAGCAGTAGGTTCCGGAGAGAGCTCGGGGGAGATTAGCGGGTAGCTTGT
AGGCGTTGGATGGGCTGGTGGACGTACATTAAGACTGTAGCGAGAGCGAA
ATGCAGGAAGAAAAGCGGAGGCAATGCATTAAGAAATACGTGGTATTTCA
ACCTAACTATCCACGATGAAAAGCGGGTGAGGGTTTGCTATTATGGAGGA
GCTCGGGGGGAAAGCTCGGTTAGCCCCGTTGCGGAGGGAGTGCTGGGTTC
CGGGTGGACTCTAGTTAGTGGGGAGGCGACTGAACGATAGGTACTGTGAG
GCACCTTGATACGTTGGAACGTTTCTTTGCGGAGTCGAACACGGGATAGG
GCTACGCTCTGATTGATTGGTTTTGCATCGAATCTCTGGTTTGGCGTTCT
GTCTTTATTTGCTGTTATTTCCGAATCCAGATATGTCCGAGAGTTCGCAC
ACTATCCTTCGATGGCAAATTATTAAAAAACAATGCGCTAAGGAGATGAT
GTTCACAGTCAGGGTCGGAATTACGTACGCCGTTCTCGTAGCCGTGTCTT
GTCTAAACGTTGCGAGGTCTAAATATAGTACACCACAGGCGTATCTGTGG
CCTGCTCGCTAGTTTAGAAGAAATACGAAATACTACGCTTTAAATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13262:853..5099+

>mRNA_H-paniculata_contig13262.2038.1 ID=mRNA_H-paniculata_contig13262.2038.1|Name=mRNA_H-paniculata_contig13262.2038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig13262:853..5099+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAACGCGTAGGCCAAAGGCTAGCATCGGGAGATCTTCAAGACATCAA
GGCCGTTCCAACTTCAGAGAAAACGGCCGAGCAGGCGCGGTCGCTGGGCA
TACCACTCACGACGTTGAACAAAGACCCGTCGCTAAGCGTAGCAATTGAC
GGCGCAGACACCGCCGTTGCCGAGACGTTCGGTCTGGTAAAAGGCGGTGG
CGGAGCATTGTTGAGGGAAAAGCTGGTTGCTGCCGCTGCCCAGGACTTCA
TAGTGATCGTAGATGACTCCAAGATTGCAGAAGGTCTAGGCGCGGCATTG
TGGAACGCGTAGGCCAAAGGCTAGCATCGGGAGATCTTCAAGACATCAAG
GCCGTTCCAACTTCAGAGAAAACGGCCGAGCAGGCGCGGTCGCTGGGCAT
ACCACTCACGACGTTGAACAAAGACCCGTCGCTAAGCGTAGCAATTGACG
GCGCAGACACCGCCGTTGCCGAGACGTTCGGTCTGGTAAAAGGCGGTGGC
GGAGCATTGTTGAGGGAAAAGCTGGTTGCTGCCGCTGCCCAGGACTTCAT
AGTGATCGTAGATGACTCCAAGATTGCAGAAGGTCTAGGCGCGGCATTCG
CGTTACCTGTGGAAATTATCCAATACGCCCACGAGCACGTCCGCCGACAA
GTGGAATCTCTGCCCAGCCTGAGCGGCTGCCAGGCGAAGCTGAGGCTGAA
GGAGGATCAATCTCCTTACGTGACCGACAATGGAAATTATATCGTTGATC
TTCATTTTCGCGCGTTACCTGTGGAAATTATCCAATACGCCCACGAGCAC
GTCCGCCGACAAGTGGAATCTCTGCCCAGCCTGAGCGGCTGCCAGGCGAA
GCTGAGGCTGAAGGAGGATCAATCTCCTTACGTGACCGACAATGGAAATT
ATATCGTTGATCTTCATTTTCGCAAACCCATCGCTGTCCCGCAGCAAGCG
GCGATCGAGATTTCTGCCGTAGTGGGCGTAGTCGAGCATGGGCTGTTCTT
GGACATGGCCACCACCATGGTTGTCGCTGCTCCTGGGGGGGTGCGAGTCA
TCACAGCGGAAGGACTTTGACAAACCCATCGCTGTCCCGCAGCAAGCGGC
GATCGAGATTTCTGCCGTAGTGGGCGTAGTCGAGCATGGGCTGTTCTTGG
ACATGGCCACCACCATGGTTGTCGCTGCTCCTGGGGGGGTGCGAGTCATC
ACAGCGGAAGGACTTTGA
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