mRNA_H-paniculata_contig13244.2033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13244.2033.1
Unique NamemRNA_H-paniculata_contig13244.2033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13244.2033.1 vs. uniprot
Match: D7FT50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT50_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 5.510e-56
Identity = 117/154 (75.97%), Postives = 123/154 (79.87%), Query Frame = 2 
Query:  377 KTDDSFQFARAIKRLRSAIEALGDSTGXXXXXXXXXXXXXXXXXXXXXAGQSTSSPRILALERKVAVIEIMREAFKSYHLAWARSSIEPAFKAAADRRCLFPEGELRDALDYFTDAITKRQRNPGGLMAPPSRTVRAHNSVAHPTLNKRSDVIR 838
            KTDDSF FARAIKRLR AIEALG  TG        XXXXXXXXX     G   S    L+LERK A+I +M+EAFKSYHLAWARSSIEPAFKAAADRR LFPEG+LRD LD FTDAITKRQRNPGGLMAPPSR+VRAHNS AHP LNKRSDVIR
Sbjct:  336 KTDDSFTFARAIKRLREAIEALGGVTGGGKATDGTXXXXXXXXXTGSAGGNRVS----LSLERKTALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGDLRDTLDDFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 485
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13244.2033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT50_ECTSI5.510e-5675.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13244contigH-paniculata_contig13244:944..3996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003580.1
Exons3
Model size1219
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13244.2033.1prot_H-paniculata_contig13244.2033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13244 1530..3618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.5410407-UTR-H-paniculata_contig13244:943..15291622929048.5410407-UTR-H-paniculata_contig13244:943..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13244 944..1529 +
1691480711.8010302-UTR-H-paniculata_contig13244:943..15291691480711.8010302-UTR-H-paniculata_contig13244:943..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13244 944..1529 +
1622929048.6089115-UTR-H-paniculata_contig13244:3618..39961622929048.6089115-UTR-H-paniculata_contig13244:3618..3996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13244 3619..3996 +
1691480711.8392518-UTR-H-paniculata_contig13244:3618..39961691480711.8392518-UTR-H-paniculata_contig13244:3618..3996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13244 3619..3996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.5579534-CDS-H-paniculata_contig13244:1529..15951622929048.5579534-CDS-H-paniculata_contig13244:1529..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 1530..1595 +
1691480711.8105388-CDS-H-paniculata_contig13244:1529..15951691480711.8105388-CDS-H-paniculata_contig13244:1529..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 1530..1595 +
1622929048.575855-CDS-H-paniculata_contig13244:2220..23461622929048.575855-CDS-H-paniculata_contig13244:2220..2346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 2221..2346 +
1691480711.8195279-CDS-H-paniculata_contig13244:2220..23461691480711.8195279-CDS-H-paniculata_contig13244:2220..2346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 2221..2346 +
1622929048.5918746-CDS-H-paniculata_contig13244:3555..36181622929048.5918746-CDS-H-paniculata_contig13244:3555..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 3556..3618 +
1691480711.8290176-CDS-H-paniculata_contig13244:3555..36181691480711.8290176-CDS-H-paniculata_contig13244:3555..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13244 3556..3618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13244.2033.1

>prot_H-paniculata_contig13244.2033.1 ID=prot_H-paniculata_contig13244.2033.1|Name=mRNA_H-paniculata_contig13244.2033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MREAFKSYHLAWARSSIEPAFKAAADRRCLFPEGELRDALDYFTDAITKR
QRNPGGLMAPPSRTVRAHNSVAHPTLNKRSDVIR*
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mRNA from alignment at H-paniculata_contig13244:944..3996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13244.2033.1 ID=mRNA_H-paniculata_contig13244.2033.1|Name=mRNA_H-paniculata_contig13244.2033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at H-paniculata_contig13244:944..3996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGCTCTGATATTCGCCACAACCAAGTTCAGGTCGTCGCCCCGCGCCG
ATCGCCCCCCGTCCCCCCCCTTCCCTGCTTGTGCATGAAACTATATCCGT
GTATCCGTGGAGTACGTACAGTACATGAAACAAAACCAGCGAGATGATGT
CGTTTGTGCGTTTGTGCTTCAAAACATGTCCATCGCATTACTCGTACGGC
ATTTTTTCCCTGCCCTCATGAACGGCGTAAAATACAAAACTACGACATTG
TTTCCAAATTCAGATTGCACTTTTGTTTGTGATCTTGCTCTGCGGTTCGT
GTCATTCATGCAACGAACGCATCCCGCCGCTTTTGTTTTTTTTTGTTTCG
CTGCCGCATTCTCCTTCGCATAGTTCAAGACGGACGACTCCTTTCAGTTC
GCGCGCGCCATCAAGCGTTTGAGGTCGGCGATCGAAGCCTTGGGTGACTC
TACCGGCGGCGGCGGCGGTGGCGGTGGTGATGATTCAGGCGACGGGGCTA
GCGACGCCGCAGCAGGGGGTGCGGGGCAATCGACGTCATCGCCGCGCATC
CTGGCGCTGGAGCGTAAAGTCGCCGTGATCGAGATCATGAGGGAGGCCTT
CAAGAGCTACCACCTGGCCTGGGCCAGGTCGTCGATCGAGCCCGCCTTCA
AGGTATCGTGGTCGGGGGATCGTGTGTGACGTCGGAGAAGGGTCAGGGGG
GGGGCAGGGTAAGGAGGGTCGTTCAACGTGCTTTGTGCCACCCTCCGCGT
CTTTGGGCGGCGCTCTCGTTGTATACGTACTGTATATTGTAGCTGTCATT
CGTTGTTCGCATGAACTTTTCTTAAGTTTGTAGAACTAAGCTGCCCGTAC
CTTACAGTTCGTTTCTCGGGTTAGTATGTTGGCCATAATTCCCCCCGGAG
TTCGCGGGGAGGGATCATGGAGTTCAGTATTGATTGGATTATTCGATTTT
GTGCATTTTCTGACTAGTTTCACGAAGGGCATTTTTGATCTCCAAGTGCG
CCCGCTGCAAAAGCTCTCCTGTGTTTATGCGGATATTGGATTTACCAGGA
TGTTTGAAATGAGGAAATGTGTAGTCTGTCGTGTACCTGCACGTACCATT
CTATGTTATTTTTTTAGTCAAGTTGTGAAAGCTGTGCCTTCTCCCTCCGT
CCCTCTTCCTCTCCACTCCCTCACCCCTCCCTCTCTCTCGCGCGCGCGAT
TTCCCTTCCTCTCAATATTTCGCCCTCACCTACCCCCCCCAACGACCATC
ACCCTCTCTCTTATTCCGTCCTTTCAGGCGGCAGCAGATCGACGGTGCTT
GTTTCCTGAGGGCGAGCTGCGTGACGCCCTCGACTACTTCACAGACGCCA
TCACCAAGCGACAGAGGAATCCGGGAGGGCTGATGGCCCCGCCGTCGAGG
ACAGTAAGTGCCCCGGATTTGTCTGTATGCATTCAGTGCGCCAGGTTATT
TTGGTAGTACCATAATGTTTTGCTTGTCGACAATGTGCAGGTGCTCGGAC
GTAGCGATTCGTACTGTTGCTAATGGCGGCTAACTCGGGAGGTGCAGAAA
GTGTTGTAAAGCCTCCCCCCTACCTTCCGGTGATGCACATTTTTTTCGAG
CTGTGGTTCCTCGGAGCTTGTGGTGCTACAATCGTGGCAAAGAAATTATT
TCGTTCGGAAAATGGTGTCGACATCCGTCATTGGATGGACACAGATGATC
TGTTGTCACCTCGACCCAAAATGATCTGTTATTAAATTGACAGACGTGGC
CTGTTACTATATGGACATGTCTGTTCGGCACTGCAGTATCTTTTCTTCTC
TACAACATGGAGTTAAAAAAGAAGTGCCCAATCACGGGGCTTTGTTGGAT
AACAGCGAGTTTGGCCGTGGCCTGAACACAAACGACGATTTTTCAATAGC
TCTGACTCACTCTTGTTGTGTGTGTGCATTTATATGTGTGTGCGTGTGTG
GGTGTGGATGTGAGTCTCCAGGTAGACAGCGTATCTCAGGCTTTGAGATC
ACGGCTAATGGATTTTTTTACGGGGCTGGTGGTCTGTTAATGTAGTGTCG
AACGTAAGGTATGTGCAATACACGGTATTTCTGTAGTGCGTATGGAGCTA
TGTGAGGCTCGTGCTTTGATAATGCGATGACCACATGAGGCCTATAAATT
TATGTGTTGTCGGACTCAAGCACGTTGCATCTACCCTGGGCAATGGTGTT
CGGACTTGCTTCGAAAGGTAGTGATGGTCATCTACCTATTTTATTTTGAC
TCTGAACCATCACGTACCAGATTCGTGACCTATCTTGCTTGCTAAAGCGC
GGTATGCCTATACTGTACAATTTATACTGTATACTTGGAAGGATGTTCAC
TTCATGTGGACAGACATTCAGCGTTTAAAGCATTTTTTCCCGGCGGGGTT
TTATGTGCCTTTTCGCTTGCCCCGTTTCCTCATCTCACAAATTGGACTAC
TATCGCCTGACGGGCATGCTTCTTTCTTCGTCTTTGCGTCAGAAGGTGTA
AGCGATCCGATCCATGTACGTACCCATGTTCGTGTACACTGTTTTGAACA
TGTAAAAATGCTCACTTCTTGCTTGTTTTGCTCTACTTGATTTGTTCTTT
CTTGTGCGACAGGTTCGAGCACACAACAGCGTGGCCCACCCGACCCTCAA
CAAGCGATCAGATGTTATCCGTTGACAGGGGCTTGGCGCAACGTTCTGGA
TTACGACTAAACCTGTGCTGTGTGTATTCAGCAGCGTATGTCACTCTTGG
TGATGGTTCCCCAGCCTACACTTTCTCGGAGATGGCTGCGCTCGTCACAC
ACCAAACGTTGTTTCGGTGTGGAGTTTAAACTTTTGGTTGGAGTGTAAAT
GTCACTAAATGAGCCTGTTCTCTCAACACCGCAGGATTGTGCTTTGCTGC
CGGCATGGGGTTTTGGAAACCTACACGAAATGTATCACCACATCGGACAA
CTGCTACGGTTTGCGTGTGACATCAACTCATCGCCCGTACCATGTTCAAA
ACCTGTGTCATCACGTGACCATGGTCTTTCGCCAACGCAGAGTTACAGTT
GCT
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Coding sequence (CDS) from alignment at H-paniculata_contig13244:944..3996+

>mRNA_H-paniculata_contig13244.2033.1 ID=mRNA_H-paniculata_contig13244.2033.1|Name=mRNA_H-paniculata_contig13244.2033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig13244:944..3996+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAGGCCTTCAAGAGCTACCACCTGGCCTGGGCCAGGTCGTCGAT
CGAGCCCGCCTTCAAGATGAGGGAGGCCTTCAAGAGCTACCACCTGGCCT
GGGCCAGGTCGTCGATCGAGCCCGCCTTCAAGGCGGCAGCAGATCGACGG
TGCTTGTTTCCTGAGGGCGAGCTGCGTGACGCCCTCGACTACTTCACAGA
CGCCATCACCAAGCGACAGAGGAATCCGGGAGGGCTGATGGCCCCGCCGT
CGAGGACAGCGGCAGCAGATCGACGGTGCTTGTTTCCTGAGGGCGAGCTG
CGTGACGCCCTCGACTACTTCACAGACGCCATCACCAAGCGACAGAGGAA
TCCGGGAGGGCTGATGGCCCCGCCGTCGAGGACAGTTCGAGCACACAACA
GCGTGGCCCACCCGACCCTCAACAAGCGATCAGATGTTATCCGTTGAGTT
CGAGCACACAACAGCGTGGCCCACCCGACCCTCAACAAGCGATCAGATGT
TATCCGTTGA
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