mRNA_H-paniculata_contig1324.2030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1324.2030.1
Unique NamemRNA_H-paniculata_contig1324.2030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1324.2030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1324contigH-paniculata_contig1324:9821..10179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.305562-UTR-H-paniculata_contig1324:9820..98491622929048.305562-UTR-H-paniculata_contig1324:9820..9849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1324 9821..9849 +
1691480711.7169163-UTR-H-paniculata_contig1324:9820..98491691480711.7169163-UTR-H-paniculata_contig1324:9820..9849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1324 9821..9849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.3238204-CDS-H-paniculata_contig1324:9849..101791622929048.3238204-CDS-H-paniculata_contig1324:9849..10179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1324 9850..10179 +
1691480711.7278984-CDS-H-paniculata_contig1324:9849..101791691480711.7278984-CDS-H-paniculata_contig1324:9849..10179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1324 9850..10179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1324.2030.1prot_H-paniculata_contig1324.2030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1324 9850..10179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1324.2030.1

>prot_H-paniculata_contig1324.2030.1 ID=prot_H-paniculata_contig1324.2030.1|Name=mRNA_H-paniculata_contig1324.2030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MFPREERVGSTNVQHKSYIPQVMFICPVSLPDSPRDFESKIGIWRVRVIK
QAHRSSARREQGQQYENPALKEKMPWLEGEEVIAQSAPHTPRKLNELGRD
GGWNVNVVTQ
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mRNA from alignment at H-paniculata_contig1324:9821..10179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1324.2030.1 ID=mRNA_H-paniculata_contig1324.2030.1|Name=mRNA_H-paniculata_contig1324.2030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=359bp|location=Sequence derived from alignment at H-paniculata_contig1324:9821..10179+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAGTTCGCGACAGGAATCGCGTCCGCATGTTCCCTAGGGAGGAAAGA
GTGGGATCCACCAACGTACAGCACAAGAGTTACATTCCTCAGGTGATGTT
CATCTGCCCCGTTTCGCTTCCAGATTCTCCCCGCGATTTCGAAAGCAAGA
TTGGAATCTGGCGTGTTCGAGTCATCAAGCAGGCGCACAGGAGTTCGGCC
CGGCGTGAGCAGGGGCAGCAATACGAAAACCCAGCATTGAAGGAAAAGAT
GCCGTGGTTGGAGGGTGAGGAAGTGATAGCGCAGAGCGCTCCCCACACGC
CGCGGAAGCTCAACGAACTCGGGAGGGACGGGGGGTGGAACGTCAATGTC
GTTACTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1324:9821..10179+

>mRNA_H-paniculata_contig1324.2030.1 ID=mRNA_H-paniculata_contig1324.2030.1|Name=mRNA_H-paniculata_contig1324.2030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig1324:9821..10179+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCCTAGGGAGGAAAGAGTGGGATCCACCAACGTACAGCACAAGAG
TTACATTCCTCAGGTGATGTTCATCTGCCCCGTTTCGCTTCCAGATTCTC
CCCGCGATTTCGAAAGCAAGATTGGAATCTGGCGTGTTCGAGTCATCAAG
CAGGCGCACAGGAGTTCGGCCCGGCGTGAGCAGGGGCAGCAATACGAAAA
CCCAGCATTGAAGGAAAAGATGCCGTGGTTGGAGGGTGAGGAAGTGATAG
CGCAGAGCGCTCCCCACACGCCGCGGAAGCTCAACGAACTCGGGAGGGAC
GGGGGGTGGAACGTCAATGTCGTTACTCAGATGTTCCCTAGGGAGGAAAG
AGTGGGATCCACCAACGTACAGCACAAGAGTTACATTCCTCAGGTGATGT
TCATCTGCCCCGTTTCGCTTCCAGATTCTCCCCGCGATTTCGAAAGCAAG
ATTGGAATCTGGCGTGTTCGAGTCATCAAGCAGGCGCACAGGAGTTCGGC
CCGGCGTGAGCAGGGGCAGCAATACGAAAACCCAGCATTGAAGGAAAAGA
TGCCGTGGTTGGAGGGTGAGGAAGTGATAGCGCAGAGCGCTCCCCACACG
CCGCGGAAGCTCAACGAACTCGGGAGGGACGGGGGGTGGAACGTCAATGT
CGTTACTCAG
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