prot_H-paniculata_contig13091.1933.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13091.1933.1
Unique Nameprot_H-paniculata_contig13091.1933.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length134
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.250e-7
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0 
Query:    1 YAVVRLFKRLGIRSMVEDGDSFTADRDYQMDIVIPAGELRGALIIAYRDESLLIDVTHADPHSVGHRIRRGGGT 74
            YA+ R    L ++  VE G  FT +R+  MDIVI  G L  A    YR+E +L+DVTHADP +  H +R G  T
Sbjct:  506 YALSRALNGLCVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNEGILLDVTHADPQAQVH-LRNGSAT 578
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYJ9_9PHAE3.250e-744.59Reverse transcriptase domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13091contigH-paniculata_contig13091:1798..2199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13091.1933.1mRNA_H-paniculata_contig13091.1933.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13091 1798..2201 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13091.1933.1 ID=prot_H-paniculata_contig13091.1933.1|Name=mRNA_H-paniculata_contig13091.1933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
YAVVRLFKRLGIRSMVEDGDSFTADRDYQMDIVIPAGELRGALIIAYRDE
SLLIDVTHADPHSVGHRIRRGGGTGKRRGFTVRSAARADETSHFGDYTGS
HLETDAEIQAGPGGKARSSKRDSQSSSVGMEFSG
back to top