mRNA_H-paniculata_contig13091.1933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13091.1933.1
Unique NamemRNA_H-paniculata_contig13091.1933.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JA95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA95_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-10
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA----AKGTLN---PRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A     + T N   P  WGWS+
Sbjct:   34 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRQTRSTSNQSSPMIWGWSV 106
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JBE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.670e-10
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA----AKGTLN---PRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A     + T N   P  WGWS+
Sbjct:   76 ATHAVGGRDGGTIALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSV 148
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.540e-10
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA----AKGTLN---PRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A     + T N   P  WGWS+
Sbjct:   92 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSV 164
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JCQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA-------AKGTLNPRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A             P  WGWS+
Sbjct:   37 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSV 109
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA-------AKGTLNPRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A             P  WGWS+
Sbjct:   52 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSV 124
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5KB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB86_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.590e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA-------AKGTLNPRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A             P  WGWS+
Sbjct:   55 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSV 127
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.180e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA-------AKGTLNPRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A             P  WGWS+
Sbjct:   90 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSV 162
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.860e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA----AKGTLN---PRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A     + T N   P  WGWS+
Sbjct:  210 ATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSV 282
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.880e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA-------AKGTLNPRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A             P  WGWS+
Sbjct:  129 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSV 201
[Close]
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.930e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:  200 ASGVVGGQESDEVSQ*GVLLERMKQVISVTTQVAISRRMQRYRLALGGRQEA----AKGTLN---PRAWGWSL 397
            A+  VGG++   ++  GV  ER+ Q++SV TQVAISRR+QRY+LAL GRQ+A     + T N   P  WGWS+
Sbjct: 1163 ATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSV 1235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13091.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA95_9PHAE2.500e-1049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE0_9PHAE4.670e-1049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL29_9PHAE8.540e-1049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ7_9PHAE1.060e-946.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2J3_9PHAE1.490e-946.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB86_9PHAE1.590e-946.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZN4_9PHAE3.180e-946.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKF1_9PHAE4.860e-949.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAD2_9PHAE5.880e-946.58Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE5.930e-949.32Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13091contigH-paniculata_contig13091:1798..2201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.1135285-CDS-H-paniculata_contig13091:1797..21991622929035.1135285-CDS-H-paniculata_contig13091:1797..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13091 1798..2199 +
1691480707.3962913-CDS-H-paniculata_contig13091:1797..21991691480707.3962913-CDS-H-paniculata_contig13091:1797..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13091 1798..2199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13091.1933.1prot_H-paniculata_contig13091.1933.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13091 1798..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13091.1933.1

>prot_H-paniculata_contig13091.1933.1 ID=prot_H-paniculata_contig13091.1933.1|Name=mRNA_H-paniculata_contig13091.1933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
YAVVRLFKRLGIRSMVEDGDSFTADRDYQMDIVIPAGELRGALIIAYRDE
SLLIDVTHADPHSVGHRIRRGGGTGKRRGFTVRSAARADETSHFGDYTGS
HLETDAEIQAGPGGKARSSKRDSQSSSVGMEFSG
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mRNA from alignment at H-paniculata_contig13091:1798..2201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13091.1933.1 ID=mRNA_H-paniculata_contig13091.1933.1|Name=mRNA_H-paniculata_contig13091.1933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=404bp|location=Sequence derived from alignment at H-paniculata_contig13091:1798..2201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCAGTCGTGCGACTGTTTAAGCGACTGGGCATCAGGAGCATGGTGGA
GGATGGAGACTCGTTTACGGCGGACCGGGACTACCAGATGGACATTGTCA
TCCCGGCAGGAGAGCTCCGAGGTGCTCTCATCATTGCCTACCGCGACGAG
AGTCTCCTGATCGACGTCACGCACGCAGATCCCCATTCAGTGGGGCACCG
CATCCGGCGTGGTGGGGGGACAGGAAAGCGACGAGGTTTCACAGTAAGGA
GTGCTGCTAGAGCGGATGAAACAAGTCATTTCGGTGACTACACAGGTAGC
CATCTCGAGACGGATGCAGAGATACAGGCTGGCCCTGGGGGGAAGGCAAG
AAGCAGCAAAAGGGACTCTCAATCCTCGAGCGTGGGGATGGAGTTTAGCG
GTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig13091:1798..2201+

>mRNA_H-paniculata_contig13091.1933.1 ID=mRNA_H-paniculata_contig13091.1933.1|Name=mRNA_H-paniculata_contig13091.1933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig13091:1798..2201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCAGTCGTGCGACTGTTTAAGCGACTGGGCATCAGGAGCATGGTGGA
GGATGGAGACTCGTTTACGGCGGACCGGGACTACCAGATGGACATTGTCA
TCCCGGCAGGAGAGCTCCGAGGTGCTCTCATCATTGCCTACCGCGACGAG
AGTCTCCTGATCGACGTCACGCACGCAGATCCCCATTCAGTGGGGCACCG
CATCCGGCGTGGTGGGGGGACAGGAAAGCGACGAGGTTTCACAGTAAGGA
GTGCTGCTAGAGCGGATGAAACAAGTCATTTCGGTGACTACACAGGTAGC
CATCTCGAGACGGATGCAGAGATACAGGCTGGCCCTGGGGGGAAGGCAAG
AAGCAGCAAAAGGGACTCTCAATCCTCGAGCGTGGGGATGGAGTTTAGCG
GTTATGCAGTCGTGCGACTGTTTAAGCGACTGGGCATCAGGAGCATGGTG
GAGGATGGAGACTCGTTTACGGCGGACCGGGACTACCAGATGGACATTGT
CATCCCGGCAGGAGAGCTCCGAGGTGCTCTCATCATTGCCTACCGCGACG
AGAGTCTCCTGATCGACGTCACGCACGCAGATCCCCATTCAGTGGGGCAC
CGCATCCGGCGTGGTGGGGGGACAGGAAAGCGACGAGGTTTCACAGTAAG
GAGTGCTGCTAGAGCGGATGAAACAAGTCATTTCGGTGACTACACAGGTA
GCCATCTCGAGACGGATGCAGAGATACAGGCTGGCCCTGGGGGGAAGGCA
AGAAGCAGCAAAAGGGACTCTCAATCCTCGAGCGTGGGGATGGAGTTTAG
CGGT
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