mRNA_H-paniculata_contig13075.1923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13075.1923.1
Unique NamemRNA_H-paniculata_contig13075.1923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13075.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13075contigH-paniculata_contig13075:6389..6830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.672194-UTR-H-paniculata_contig13075:6388..65211622929033.672194-UTR-H-paniculata_contig13075:6388..6521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13075 6389..6521 +
1691480706.8007236-UTR-H-paniculata_contig13075:6388..65211691480706.8007236-UTR-H-paniculata_contig13075:6388..6521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13075 6389..6521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.6841402-CDS-H-paniculata_contig13075:6521..68301622929033.6841402-CDS-H-paniculata_contig13075:6521..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13075 6522..6830 +
1691480706.8105235-CDS-H-paniculata_contig13075:6521..68301691480706.8105235-CDS-H-paniculata_contig13075:6521..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13075 6522..6830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13075.1923.1prot_H-paniculata_contig13075.1923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13075 6522..6830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13075.1923.1

>prot_H-paniculata_contig13075.1923.1 ID=prot_H-paniculata_contig13075.1923.1|Name=mRNA_H-paniculata_contig13075.1923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MFPPILKPRRILSVFCENHLQSIRICTGGEVFHPPDKYEWSIRSYLELSL
FVLGRQVFIRLQVYEYSLYRCSPGGRIPGEQLHMQILFVFRMVLYRLDTL
ICP
back to top

mRNA from alignment at H-paniculata_contig13075:6389..6830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13075.1923.1 ID=mRNA_H-paniculata_contig13075.1923.1|Name=mRNA_H-paniculata_contig13075.1923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=442bp|location=Sequence derived from alignment at H-paniculata_contig13075:6389..6830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGATGGAGTATTCGATCTGTACAGTACCATCCGAAATCAGACAGGAT
ATGCGTGTGTGACTGTTCACCGGGTATACGACCACTTGGTGGCCATCCGT
AAACCGAATGAACGGGGGTGAGTACTTTAGTCTATGTTTCCGCCCATTCT
GAAACCCAGACGAATACTTTCAGTTTTTTGTGAAAACCATTTGCAAAGTA
TTCGTATATGTACGGGGGGTGAAGTATTTCACCCCCCGGACAAATACGAA
TGGAGCATTCGCAGCTATCTTGAACTATCGTTATTTGTCTTGGGTAGACA
GGTCTTTATTCGTTTACAAGTCTATGAATATTCACTCTACAGATGCTCAC
CAGGCGGTCGTATACCCGGCGAACAGTTACACATGCAGATCCTGTTTGTT
TTCCGGATGGTACTGTACAGATTGGATACTCTTATCTGCCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13075:6389..6830+

>mRNA_H-paniculata_contig13075.1923.1 ID=mRNA_H-paniculata_contig13075.1923.1|Name=mRNA_H-paniculata_contig13075.1923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig13075:6389..6830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCGCCCATTCTGAAACCCAGACGAATACTTTCAGTTTTTTGTGA
AAACCATTTGCAAAGTATTCGTATATGTACGGGGGGTGAAGTATTTCACC
CCCCGGACAAATACGAATGGAGCATTCGCAGCTATCTTGAACTATCGTTA
TTTGTCTTGGGTAGACAGGTCTTTATTCGTTTACAAGTCTATGAATATTC
ACTCTACAGATGCTCACCAGGCGGTCGTATACCCGGCGAACAGTTACACA
TGCAGATCCTGTTTGTTTTCCGGATGGTACTGTACAGATTGGATACTCTT
ATCTGCCCGATGTTTCCGCCCATTCTGAAACCCAGACGAATACTTTCAGT
TTTTTGTGAAAACCATTTGCAAAGTATTCGTATATGTACGGGGGGTGAAG
TATTTCACCCCCCGGACAAATACGAATGGAGCATTCGCAGCTATCTTGAA
CTATCGTTATTTGTCTTGGGTAGACAGGTCTTTATTCGTTTACAAGTCTA
TGAATATTCACTCTACAGATGCTCACCAGGCGGTCGTATACCCGGCGAAC
AGTTACACATGCAGATCCTGTTTGTTTTCCGGATGGTACTGTACAGATTG
GATACTCTTATCTGCCCG
back to top