mRNA_H-paniculata_contig1307.1922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	2040
Cds size	1917
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1307.1922.1	prot_H-paniculata_contig1307.1922.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1307 11547..14297 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929033.4059148-CDS-H-paniculata_contig1307:11546..12989	1622929033.4059148-CDS-H-paniculata_contig1307:11546..12989	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 11547..12989 -
1691480706.610205-CDS-H-paniculata_contig1307:11546..12989	1691480706.610205-CDS-H-paniculata_contig1307:11546..12989	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 11547..12989 -
1622929033.4207742-CDS-H-paniculata_contig1307:13351..13573	1622929033.4207742-CDS-H-paniculata_contig1307:13351..13573	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 13352..13573 -
1691480706.620461-CDS-H-paniculata_contig1307:13351..13573	1691480706.620461-CDS-H-paniculata_contig1307:13351..13573	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 13352..13573 -
1622929033.4353404-CDS-H-paniculata_contig1307:14045..14297	1622929033.4353404-CDS-H-paniculata_contig1307:14045..14297	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 14046..14297 -
1691480706.6304786-CDS-H-paniculata_contig1307:14045..14297	1691480706.6304786-CDS-H-paniculata_contig1307:14045..14297	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1307 14046..14297 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929033.4488397-UTR-H-paniculata_contig1307:14297..14418	1622929033.4488397-UTR-H-paniculata_contig1307:14297..14418	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1307 14298..14418 -
1691480706.6403-UTR-H-paniculata_contig1307:14297..14418	1691480706.6403-UTR-H-paniculata_contig1307:14297..14418	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1307 14298..14418 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1307:11547..14418-
coding sequence from alignment at H-paniculata_contig1307:11547..14418-

protein sequence of mRNA_H-paniculata_contig1307.1922.1

>prot_H-paniculata_contig1307.1922.1 ID=prot_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=639bp
MSKSLAGALVPLASGKGSESTGSSALSGGLIPLAGRRNSSAAVAGGSTAT
FGRLIDSDGSDWDNDDEKNEGKAVTDSAFIEDNKSKRVSRRGRDTGRKKK
QGSNSRRETEADSSRSSKSRKEKTKRGDGENRRQKALMPDPVTDDDGDDD
YLFMGATAGAKGGRKSGTGMAEATALLLEGSDDSFSFATTSRTRKSKPLT
IDESLPRGTGLSGDISSTGSTSSMRTSETKTMNARTEDERGLYASTAFRH
DDSRSTTSHPGGVGHESGKPLNAFTGTSGKETSAFGRLSSGLAGPSTTIH
NSDEADALLRPTDPDALAGVATAASTTTPEIIPSQSGADARHDESRQSRF
TALSSSTVNVKDTRTIGWGQSTEAASKRRSPSPPSGARRARSESPQRSPR
RSLVSHGVTTSLSSDSAPAIGETAEQSKHERDNSVTEGVTDGTYASSRRS
EAASGNSGTIAEQTVGIGSVTEHSEHTSPSISSRGAVSATALTRGTMPRR
SALTAPNKPRRREGKVRGVSFDDDLGDLDALDVLPGSDDDAPTPSSAAAA
SRFSSSIDNVEKIPPTDIPSPSADDNTLSVVSTGKTFDRRTIAGEKRLDA
DGDAGQRPTSTRELATNLSFSTTSRSAQRSMPITAGLSP

mRNA from alignment at H-paniculata_contig1307:11547..14418-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1307.1922.1 ID=mRNA_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2872bp|location=Sequence derived from alignment at H-paniculata_contig1307:11547..14418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGTGATTCACTCTGTGACTGTTAAGTCATGTCTTCTCGTTACTCGGG
GCCAATCTAACCTATAATGTCTCCGCAGCATCCAAGATACAGATAAACCA
ACACCACCACAACAGCAGAACATGAGCAAGTCGTTGGCTGGTGCCCTCGT
GCCGCTTGCGAGCGGGAAGGGCTCGGAATCTACCGGGTCGAGTGCCCTCA
GTGGGGGCTTAATTCCATTGGCAGGTCGACGCAATTCATCTGCTGCCGTT
GCCGGAGGGTCAACGGCGACTTTCGGACGTCTTATCGATAGTGATGGGAG
CGATTGGGATAATGACGATGAAAAAAACGAAGGGAAGGCGGTCACAGACT
CTGCGTTTATTGAAGACAACAAAGTAAGAGGTTTGATGAATTGCCTGCCC
GTTGTGTATCCTCAGGATTGAAAAGGATCCACCTTGTTTTGGCGAATACC
AATTGACAGACGTAATCGCAAATTCAAAGCTCCTAATGTATGCTGCTACA
GGATCAAGCCCTTTACCTCACTATTATATGAAGCAACAAGTTAATTTCAA
GTATTGTCCAGTCCTGATTAACTGAGGCTTCAGCTATTTTAAGTTTGCAG
CCGACAATTGCTTACGCAACGCAATTGAAGGGTAGGCCGCCGAGAACACC
AGTCCGTCGTTGTTTATCTAAAGAATATGTACAACCCACCCAACGCACCC
CACCTTGGCGAGATACGTTTTGTTGTCCAAAAATGTGAGCCAATTCAACA
TCCCAACGGCCGCCAGTGCAAACACGATCCAGTCTCGATGACCCTGGCGA
GACTCTTCTTTTCGCATACTTTCGGAAATTTGCCATGTGGTGCAGAGCAA
GCGGGTCTCACGCCGTGGAAGAGATACGGGCCGGAAAAAGAAACAGGGCA
GCAACAGCAGGAGGGAAACAGAAGCGGACAGCTCACGCAGTAGTAAGTCA
AGGAAAGAAAAAACGAAGCGCGGTGATGGGGAGAACAGACGGCAGAAGGC
ACTGATGCCAGATCCAGTGACAGACGACGATGGAGACGACGACTACTTGT
TCATGGGAGCAACTGCGGTACGAAGTAACCTAACCAATGCACTCAGGATT
GGCAGTCTGTCACTGTATTGCAGCGTTTAATGTGGCGAGAGAGTTTAAAA
GCTCACGTTTATGTGCTGCCATGGAGCGTTGTTGGGCTATGGAATGAGAT
GTCTGTAATGAAGTCAGATGAACTAATCACGAAGATAAAATACAGCACAT
CGTGTTGCGGCAGGTGAAATCGTGCTCATGTAGAGCAGCAGCTGGGTGTG
TACCGGCCAAGAGGCTGGTTTGCCAATTATTCTTGATGCACCGTGTTGCA
CTCTGCACGCGGCATACCACGATCACGACCTCCAGCGACATTCCCTTTGT
TCACCTCCATGCTGTGTACTTACCTGAAGGGAGCCAAAGGCGGACGAAAG
AGTGGCACTGGAATGGCAGAGGCGACCGCCCTCCTATTGGAAGGATCTGA
TGACTCCTTCAGCTTTGCCACAACGAGCAGAACCAGAAAATCAAAACCGC
TGACCATAGATGAATCCCTACCAAGAGGCACTGGTCTCTCAGGAGACATT
TCATCTACTGGCAGCACCAGTAGCATGAGAACATCGGAAACTAAAACAAT
GAACGCAAGAACCGAAGACGAGAGAGGTTTGTACGCTTCGACCGCATTCA
GGCACGATGACTCCCGTTCTACTACGAGCCATCCCGGAGGTGTTGGACAC
GAGAGCGGAAAGCCATTGAACGCATTTACAGGCACGTCCGGAAAGGAGAC
TTCTGCGTTTGGAAGGCTCTCCTCCGGGCTAGCCGGTCCCAGCACAACCA
TCCATAATTCTGATGAGGCAGACGCGCTCCTGAGACCGACTGATCCCGAT
GCTCTCGCTGGCGTTGCCACTGCTGCCAGCACCACGACACCAGAAATTAT
ACCCTCCCAGAGTGGAGCAGACGCGCGACACGATGAATCACGTCAGAGTC
GTTTCACCGCGTTGTCCTCCTCCACTGTAAACGTAAAAGATACCAGGACC
ATCGGTTGGGGCCAATCAACAGAAGCAGCGTCGAAGCGCAGATCACCGTC
CCCGCCGTCCGGCGCCCGTAGGGCACGGTCAGAATCTCCTCAGAGAAGTC
CTCGCCGTAGTCTTGTCAGTCATGGTGTGACTACCTCACTCTCGAGTGAT
AGTGCTCCCGCTATCGGTGAGACAGCGGAACAATCAAAGCATGAACGTGA
TAACTCTGTAACAGAGGGCGTTACCGATGGTACTTACGCAAGTAGCAGAA
GAAGCGAGGCTGCTAGCGGCAATTCCGGCACCATTGCAGAACAAACAGTG
GGGATCGGAAGCGTGACTGAACATAGCGAACATACATCGCCCTCTATTAG
TAGCAGAGGAGCTGTCAGCGCAACAGCGTTGACTCGGGGCACGATGCCGC
GTCGTAGCGCGTTAACAGCACCGAATAAGCCTCGGAGACGTGAAGGCAAG
GTGCGTGGGGTAAGCTTCGACGACGACCTAGGTGATCTCGATGCATTGGA
TGTACTGCCCGGCAGCGATGACGATGCTCCTACCCCTTCATCTGCCGCCG
CTGCCTCTCGCTTTTCTTCCTCCATCGACAATGTAGAAAAGATACCACCG
ACTGACATTCCGAGTCCGTCGGCCGACGACAACACCCTCTCTGTAGTTTC
CACAGGCAAAACCTTTGACAGGCGAACTATTGCTGGAGAAAAACGGTTGG
ATGCCGATGGCGATGCTGGTCAGCGGCCAACTTCAACACGCGAGTTGGCG
ACGAACCTATCGTTTAGCACGACGAGTCGGAGTGCTCAGCGTTCGATGCC
TATCACTGCTGGACTCTCCCCG

Coding sequence (CDS) from alignment at H-paniculata_contig1307:11547..14418-

>mRNA_H-paniculata_contig1307.1922.1 ID=mRNA_H-paniculata_contig1307.1922.1|Name=mRNA_H-paniculata_contig1307.1922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3834bp|location=Sequence derived from alignment at H-paniculata_contig1307:11547..14418- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGTCGTTGGCTGGTGCCCTCGTGCCGCTTGCGAGCGGGAAGGG
CTCGGAATCTACCGGGTCGAGTGCCCTCAGTGGGGGCTTAATTCCATTGG
CAGGTCGACGCAATTCATCTGCTGCCGTTGCCGGAGGGTCAACGGCGACT
TTCGGACGTCTTATCGATAGTGATGGGAGCGATTGGGATAATGACGATGA
AAAAAACGAAGGGAAGGCGGTCACAGACTCTGCGTTTATTGAAGACAACA
AAATGAGCAAGTCGTTGGCTGGTGCCCTCGTGCCGCTTGCGAGCGGGAAG
GGCTCGGAATCTACCGGGTCGAGTGCCCTCAGTGGGGGCTTAATTCCATT
GGCAGGTCGACGCAATTCATCTGCTGCCGTTGCCGGAGGGTCAACGGCGA
CTTTCGGACGTCTTATCGATAGTGATGGGAGCGATTGGGATAATGACGAT
GAAAAAAACGAAGGGAAGGCGGTCACAGACTCTGCGTTTATTGAAGACAA
CAAAAGCAAGCGGGTCTCACGCCGTGGAAGAGATACGGGCCGGAAAAAGA
AACAGGGCAGCAACAGCAGGAGGGAAACAGAAGCGGACAGCTCACGCAGT
AGTAAGTCAAGGAAAGAAAAAACGAAGCGCGGTGATGGGGAGAACAGACG
GCAGAAGGCACTGATGCCAGATCCAGTGACAGACGACGATGGAGACGACG
ACTACTTGTTCATGGGAGCAACTGCGAGCAAGCGGGTCTCACGCCGTGGA
AGAGATACGGGCCGGAAAAAGAAACAGGGCAGCAACAGCAGGAGGGAAAC
AGAAGCGGACAGCTCACGCAGTAGTAAGTCAAGGAAAGAAAAAACGAAGC
GCGGTGATGGGGAGAACAGACGGCAGAAGGCACTGATGCCAGATCCAGTG
ACAGACGACGATGGAGACGACGACTACTTGTTCATGGGAGCAACTGCGGG
AGCCAAAGGCGGACGAAAGAGTGGCACTGGAATGGCAGAGGCGACCGCCC
TCCTATTGGAAGGATCTGATGACTCCTTCAGCTTTGCCACAACGAGCAGA
ACCAGAAAATCAAAACCGCTGACCATAGATGAATCCCTACCAAGAGGCAC
TGGTCTCTCAGGAGACATTTCATCTACTGGCAGCACCAGTAGCATGAGAA
CATCGGAAACTAAAACAATGAACGCAAGAACCGAAGACGAGAGAGGTTTG
TACGCTTCGACCGCATTCAGGCACGATGACTCCCGTTCTACTACGAGCCA
TCCCGGAGGTGTTGGACACGAGAGCGGAAAGCCATTGAACGCATTTACAG
GCACGTCCGGAAAGGAGACTTCTGCGTTTGGAAGGCTCTCCTCCGGGCTA
GCCGGTCCCAGCACAACCATCCATAATTCTGATGAGGCAGACGCGCTCCT
GAGACCGACTGATCCCGATGCTCTCGCTGGCGTTGCCACTGCTGCCAGCA
CCACGACACCAGAAATTATACCCTCCCAGAGTGGAGCAGACGCGCGACAC
GATGAATCACGTCAGAGTCGTTTCACCGCGTTGTCCTCCTCCACTGTAAA
CGTAAAAGATACCAGGACCATCGGTTGGGGCCAATCAACAGAAGCAGCGT
CGAAGCGCAGATCACCGTCCCCGCCGTCCGGCGCCCGTAGGGCACGGTCA
GAATCTCCTCAGAGAAGTCCTCGCCGTAGTCTTGTCAGTCATGGTGTGAC
TACCTCACTCTCGAGTGATAGTGCTCCCGCTATCGGTGAGACAGCGGAAC
AATCAAAGCATGAACGTGATAACTCTGTAACAGAGGGCGTTACCGATGGT
ACTTACGCAAGTAGCAGAAGAAGCGAGGCTGCTAGCGGCAATTCCGGCAC
CATTGCAGAACAAACAGTGGGGATCGGAAGCGTGACTGAACATAGCGAAC
ATACATCGCCCTCTATTAGTAGCAGAGGAGCTGTCAGCGCAACAGCGTTG
ACTCGGGGCACGATGCCGCGTCGTAGCGCGTTAACAGCACCGAATAAGCC
TCGGAGACGTGAAGGCAAGGTGCGTGGGGTAAGCTTCGACGACGACCTAG
GTGATCTCGATGCATTGGATGTACTGCCCGGCAGCGATGACGATGCTCCT
ACCCCTTCATCTGCCGCCGCTGCCTCTCGCTTTTCTTCCTCCATCGACAA
TGTAGAAAAGATACCACCGACTGACATTCCGAGTCCGTCGGCCGACGACA
ACACCCTCTCTGTAGTTTCCACAGGCAAAACCTTTGACAGGCGAACTATT
GCTGGAGAAAAACGGTTGGATGCCGATGGCGATGCTGGTCAGCGGCCAAC
TTCAACACGCGAGTTGGCGACGAACCTATCGTTTAGCACGACGAGTCGGA
GTGCTCAGCGTTCGATGCCTATCACTGCTGGACTCTCCCCGGGAGCCAAA
GGCGGACGAAAGAGTGGCACTGGAATGGCAGAGGCGACCGCCCTCCTATT
GGAAGGATCTGATGACTCCTTCAGCTTTGCCACAACGAGCAGAACCAGAA
AATCAAAACCGCTGACCATAGATGAATCCCTACCAAGAGGCACTGGTCTC
TCAGGAGACATTTCATCTACTGGCAGCACCAGTAGCATGAGAACATCGGA
AACTAAAACAATGAACGCAAGAACCGAAGACGAGAGAGGTTTGTACGCTT
CGACCGCATTCAGGCACGATGACTCCCGTTCTACTACGAGCCATCCCGGA
GGTGTTGGACACGAGAGCGGAAAGCCATTGAACGCATTTACAGGCACGTC
CGGAAAGGAGACTTCTGCGTTTGGAAGGCTCTCCTCCGGGCTAGCCGGTC
CCAGCACAACCATCCATAATTCTGATGAGGCAGACGCGCTCCTGAGACCG
ACTGATCCCGATGCTCTCGCTGGCGTTGCCACTGCTGCCAGCACCACGAC
ACCAGAAATTATACCCTCCCAGAGTGGAGCAGACGCGCGACACGATGAAT
CACGTCAGAGTCGTTTCACCGCGTTGTCCTCCTCCACTGTAAACGTAAAA
GATACCAGGACCATCGGTTGGGGCCAATCAACAGAAGCAGCGTCGAAGCG
CAGATCACCGTCCCCGCCGTCCGGCGCCCGTAGGGCACGGTCAGAATCTC
CTCAGAGAAGTCCTCGCCGTAGTCTTGTCAGTCATGGTGTGACTACCTCA
CTCTCGAGTGATAGTGCTCCCGCTATCGGTGAGACAGCGGAACAATCAAA
GCATGAACGTGATAACTCTGTAACAGAGGGCGTTACCGATGGTACTTACG
CAAGTAGCAGAAGAAGCGAGGCTGCTAGCGGCAATTCCGGCACCATTGCA
GAACAAACAGTGGGGATCGGAAGCGTGACTGAACATAGCGAACATACATC
GCCCTCTATTAGTAGCAGAGGAGCTGTCAGCGCAACAGCGTTGACTCGGG
GCACGATGCCGCGTCGTAGCGCGTTAACAGCACCGAATAAGCCTCGGAGA
CGTGAAGGCAAGGTGCGTGGGGTAAGCTTCGACGACGACCTAGGTGATCT
CGATGCATTGGATGTACTGCCCGGCAGCGATGACGATGCTCCTACCCCTT
CATCTGCCGCCGCTGCCTCTCGCTTTTCTTCCTCCATCGACAATGTAGAA
AAGATACCACCGACTGACATTCCGAGTCCGTCGGCCGACGACAACACCCT
CTCTGTAGTTTCCACAGGCAAAACCTTTGACAGGCGAACTATTGCTGGAG
AAAAACGGTTGGATGCCGATGGCGATGCTGGTCAGCGGCCAACTTCAACA
CGCGAGTTGGCGACGAACCTATCGTTTAGCACGACGAGTCGGAGTGCTCA
GCGTTCGATGCCTATCACTGCTGGACTCTCCCCG

mRNA_H-paniculata_contig1307.1922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

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