mRNA_H-paniculata_contig1299.1879.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1299.1879.1
Unique NamemRNA_H-paniculata_contig1299.1879.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1299.1879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1299contigH-paniculata_contig1299:913..1536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size558
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1299.1879.1prot_H-paniculata_contig1299.1879.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1299 1077..1430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.1535647-UTR-H-paniculata_contig1299:912..10761622929025.1535647-UTR-H-paniculata_contig1299:912..1076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1299 913..1076 -
1691480704.0607295-UTR-H-paniculata_contig1299:912..10761691480704.0607295-UTR-H-paniculata_contig1299:912..1076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1299 913..1076 -
1622929025.2060537-UTR-H-paniculata_contig1299:1430..15361622929025.2060537-UTR-H-paniculata_contig1299:1430..1536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1299 1431..1536 -
1691480704.0882537-UTR-H-paniculata_contig1299:1430..15361691480704.0882537-UTR-H-paniculata_contig1299:1430..1536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1299 1431..1536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.1686187-CDS-H-paniculata_contig1299:1076..11561622929025.1686187-CDS-H-paniculata_contig1299:1076..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1299 1077..1156 -
1691480704.0723312-CDS-H-paniculata_contig1299:1076..11561691480704.0723312-CDS-H-paniculata_contig1299:1076..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1299 1077..1156 -
1622929025.1905363-CDS-H-paniculata_contig1299:1222..14301622929025.1905363-CDS-H-paniculata_contig1299:1222..1430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1299 1223..1430 -
1691480704.080545-CDS-H-paniculata_contig1299:1222..14301691480704.080545-CDS-H-paniculata_contig1299:1222..1430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1299 1223..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1299.1879.1

>prot_H-paniculata_contig1299.1879.1 ID=prot_H-paniculata_contig1299.1879.1|Name=mRNA_H-paniculata_contig1299.1879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MKISYLLSHSFFGKYVITVQDFVYSCFFFFIKVTKTLLRHKRIFRIGFWY
PTGVKEPIANRILSRKTSPLLCNIVRVSYLTEAHSLVLSRPCLLY*
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mRNA from alignment at H-paniculata_contig1299:913..1536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1299.1879.1 ID=mRNA_H-paniculata_contig1299.1879.1|Name=mRNA_H-paniculata_contig1299.1879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1299:913..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTATTTATCATTTATCCTGATAAAAACTAGGCTTTTGCTCACATATGT
GTGTGTGTATGTATGGCATTTCATAGTGTTCATGAATTTCACATTTTATC
GATGTCATGAAAATTTCATATTTATTGTCGCACTCTTTTTTTGGGAAGTA
TGTCATAACTGTCCAGGATTTTGTTTATAGTTGTTTTTTTTTCTTCATAA
AAGTGACGAAAACCTTGTTACGACACAAACGGATATTTAGAATCGGTTTT
TGGTACCCTACTGGAGTAAAAGAACCTATTGCGAACAGGATACTTTCTCG
GAAGACTAGCCCTCGTGGGGACTGTGTGTGCACGCTCTGGTTCTTGAATC
CAGGTTTTAGTATTGTCGTGTGAGCGGTAGTCTTGTGTAATATTGTAAGG
GTATCGTACTTGACAGAGGCTCATTCACTTGTTTTGAGTAGGCCGTGCTT
ATTGTATTGATTTCATTGCGGTCATCGTTATTATGCTGGTTTTACAAAGG
ATGTAAAGAAACGAATTTAGCGATTTGGGTGCCAGAGGCTATCTCAGAAC
AAAAATACCATATGACAATAACGGTCGAGCCCTGAAACCCTCGTTCGCGC
AACCATGCCACCCACCAATTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1299:913..1536-

>mRNA_H-paniculata_contig1299.1879.1 ID=mRNA_H-paniculata_contig1299.1879.1|Name=mRNA_H-paniculata_contig1299.1879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1299:913..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAATTTCATATTTATTGTCGCACTCTTTTTTTGGGAAGTATGTCAT
AACTGTCCAGGATTTTGTTTATAGTTGTTTTTTTTTCTTCATAAAAGTGA
CGAAAACCTTGTTACGACACAAACGGATATTTAGAATCGGTTTTTGGTAC
CCTACTGGAGTAAAAGAACCTATTGCGAACAGGATACTTTCTCGGAAGAC
TAGCCCTCATGAAAATTTCATATTTATTGTCGCACTCTTTTTTTGGGAAG
TATGTCATAACTGTCCAGGATTTTGTTTATAGTTGTTTTTTTTTCTTCAT
AAAAGTGACGAAAACCTTGTTACGACACAAACGGATATTTAGAATCGGTT
TTTGGTACCCTACTGGAGTAAAAGAACCTATTGCGAACAGGATACTTTCT
CGGAAGACTAGCCCTCTCTTGTGTAATATTGTAAGGGTATCGTACTTGAC
AGAGGCTCATTCACTTGTTTTGAGTAGGCCGTGCTTATTGTATTGATCTT
GTGTAATATTGTAAGGGTATCGTACTTGACAGAGGCTCATTCACTTGTTT
TGAGTAGGCCGTGCTTATTGTATTGA
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