mRNA_H-paniculata_contig12965.1858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12965.1858.1
Unique NamemRNA_H-paniculata_contig12965.1858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12965.1858.1 vs. uniprot
Match: D8LBB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB7_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.910e-52
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 RKKPTLPDPNAINGAVMQDPFNMDHMKDLPGLTGSHGRELSLLVSETVSYMDPAFPNLEFHRRMDMDRAGYFMPGYKPRVNSPGPDAGAYWLERRQSYRVKMTDP 315
            RKKPTLPDPN +NG+VM DPFNMDH+KDLPGL G   R LS LVS+TVSY+DPAFPNLEFHRR  MDRAGYFMPGYKP+V SPGP AGAYWLERRQSYRVKM+ P
Sbjct:  605 RKKPTLPDPNQVNGSVMADPFNMDHIKDLPGLLGGDKRGLSRLVSDTVSYIDPAFPNLEFHRRAAMDRAGYFMPGYKPQVISPGPAAGAYWLERRQSYRVKMSAP 709
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BLAST of mRNA_H-paniculata_contig12965.1858.1 vs. uniprot
Match: A0A6H5L365_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L365_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.230e-32
Identity = 62/94 (65.96%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   34 INGAVMQDPFNMDHMKDLPGLTGSHGRELSLLVSETVSYMDPAFPNLEFHRRMDMDRAGYFMPGYKPRVNSPGPDAGAYWLERRQSYRVKMTDP 315
            + G            KDLPGL G   R LS LVS+TVSY++PAFPNLEF+RR  MDRAGYFMPGYKP+  SPGP AGAYWLERRQSYRVKM+ P
Sbjct:  544 VEGGDQTKRLETGQRKDLPGLVGGDKRGLSRLVSDTVSYINPAFPNLEFYRRAAMDRAGYFMPGYKPQGISPGPAAGAYWLERRQSYRVKMSAP 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12965.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB7_ECTSI7.910e-5280.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L365_9PHAE1.230e-3265.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12965contigH-paniculata_contig12965:5751..7140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004510.1
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12965.1858.1prot_H-paniculata_contig12965.1858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12965 5751..7140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929022.620072-CDS-H-paniculata_contig12965:5750..58281622929022.620072-CDS-H-paniculata_contig12965:5750..5828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 5751..5828 -
1691480703.020658-CDS-H-paniculata_contig12965:5750..58281691480703.020658-CDS-H-paniculata_contig12965:5750..5828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 5751..5828 -
1622929022.663634-CDS-H-paniculata_contig12965:6399..65551622929022.663634-CDS-H-paniculata_contig12965:6399..6555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 6400..6555 -
1691480703.0322263-CDS-H-paniculata_contig12965:6399..65551691480703.0322263-CDS-H-paniculata_contig12965:6399..6555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 6400..6555 -
1622929022.6819057-CDS-H-paniculata_contig12965:7059..71401622929022.6819057-CDS-H-paniculata_contig12965:7059..7140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 7060..7140 -
1691480703.043287-CDS-H-paniculata_contig12965:7059..71401691480703.043287-CDS-H-paniculata_contig12965:7059..7140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12965 7060..7140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12965.1858.1

>prot_H-paniculata_contig12965.1858.1 ID=prot_H-paniculata_contig12965.1858.1|Name=mRNA_H-paniculata_contig12965.1858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
RKKPTLPDPNAINGAVMQDPFNMDHMKDLPGLTGSHGRELSLLVSETVSY
MDPAFPNLEFHRRMDMDRAGYFMPGYKPRVNSPGPDAGAYWLERRQSYRV
KMTDP
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mRNA from alignment at H-paniculata_contig12965:5751..7140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12965.1858.1 ID=mRNA_H-paniculata_contig12965.1858.1|Name=mRNA_H-paniculata_contig12965.1858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-paniculata_contig12965:5751..7140- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAGAAACCAACACTACCGGATCCAAACGCTATCAATGGTGCAGTAAT
GCAGGACCCATTCAACATGGACCACATGAAGGTAAGTCACTGGTCAACAC
ACGTACCCTCTCCAATTAGAACTGTGTCGGCCTAGAAGAAGGCCGCCACC
ACCACCCGAACTACTACGGGTTCGACAAACGCACAGTGCTATCGAGGTCT
TGGAGACACATGTGGGATGTATGCACTCGTGATTACTTCCCCCTTGTCAC
TAGAAAGGACCTCGCGTGTTAGGCTGCTAATAATAGGTACGTGCATCACA
GGTTGGGAAAACATTCAAAATATTCTCCGGCGAAAGCAGGAAAGACGACA
TGTTTTTGTGCTCCGATGCATTCTCGCGGCAGAACTCCATTCTTCGCCTT
TTTATGAATCAACGCACGGAACGAAGATGAGATCGCCTTGATTTCACCTA
CTCCATCATACATCAATCACCCTGCTTAACATCAAAACGTCTCTGACTAT
GAAAACCGGAAAACCGGAATATTGAATATTTTGCCCAAGTGAGCTGCTCT
CAGTCAATCCTCGGCCCTCTCGGCGAACCATCCAGGATCTTCCTGGTCTA
ACTGGCAGTCACGGTCGCGAGCTTAGCCTGCTTGTTTCAGAGACGGTGAG
TTACATGGATCCAGCTTTTCCCAACCTGGAGTTTCATCGGCGCATGGACA
TGGATAGGGCTGGCTACTTTATGCCGGGATACAAGCCCAGGGTGAGCTGT
GAGCTGGCTAAACCAATGTGGGCGATGACAACAAGAACCCAGCGGATCCT
TACACCTCGGCACATGCCACCACCAGTTGCTCAATCTCGTTGTTCAATTT
TATCTTGCAGCATTCTTGAACGCGCCTAGTCATTTCGAGCTGTATGTATG
TATGATAATCCGAGCCTCAGGTTAGTCGAAGAAGCCCACAGGTAAAGGTC
ATTCCTAGCAGTCGCATTTTTGCCGGAATAATTGAAATTTGACAATAATA
AGATATTTGACCTTTCAAACAAGAGCCAAAATTTATCCAACAGAACTGTC
AACTATTGTTCTCGGCGATTCTTCTTACAAATATGAAAAACTATAAATTA
TCGAGCAAATTTTGGCTCTCATTTAAGCACCCAAATATCTAATATATGAC
GTTTTCCCGTTTTTCCTCCAACAAATGCGCCTGCTAGGAATGACCCTGAG
AGAAATTCCCAAGAGAAAATGCGCTAGTGGTACCAAGTGCTTGATTTCGC
CACCCCCAACAAACTCTTTCGTCGGCGCTGGTCACAATCTAGCCGATTGC
ACTGCACCTCAGGTGAACTCCCCAGGTCCCGATGCCGGTGCATACTGGCT
AGAACGACGGCAGTCCTACCGTGTAAAGATGACCGACCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12965:5751..7140-

>mRNA_H-paniculata_contig12965.1858.1 ID=mRNA_H-paniculata_contig12965.1858.1|Name=mRNA_H-paniculata_contig12965.1858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig12965:5751..7140- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAGAAACCAACACTACCGGATCCAAACGCTATCAATGGTGCAGTAAT
GCAGGACCCATTCAACATGGACCACATGAAGCGAAAGAAACCAACACTAC
CGGATCCAAACGCTATCAATGGTGCAGTAATGCAGGACCCATTCAACATG
GACCACATGAAGGATCTTCCTGGTCTAACTGGCAGTCACGGTCGCGAGCT
TAGCCTGCTTGTTTCAGAGACGGTGAGTTACATGGATCCAGCTTTTCCCA
ACCTGGAGTTTCATCGGCGCATGGACATGGATAGGGCTGGCTACTTTATG
CCGGGATACAAGCCCAGGGATCTTCCTGGTCTAACTGGCAGTCACGGTCG
CGAGCTTAGCCTGCTTGTTTCAGAGACGGTGAGTTACATGGATCCAGCTT
TTCCCAACCTGGAGTTTCATCGGCGCATGGACATGGATAGGGCTGGCTAC
TTTATGCCGGGATACAAGCCCAGGGTGAACTCCCCAGGTCCCGATGCCGG
TGCATACTGGCTAGAACGACGGCAGTCCTACCGTGTAAAGATGACCGACC
CTGTGAACTCCCCAGGTCCCGATGCCGGTGCATACTGGCTAGAACGACGG
CAGTCCTACCGTGTAAAGATGACCGACCCT
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